Wall clock time and date at job start Tue Mar 31 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86809 * 119.99566 * 2 1 4 4 H 1.48497 * 109.47163 * 274.98000 * 3 2 1 5 5 H 1.48501 * 109.46874 * 34.98552 * 3 2 1 6 6 H 1.48506 * 109.46732 * 154.98323 * 3 2 1 7 7 C 1.39006 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99914 * 161.86219 * 7 2 1 9 9 N 1.36893 * 120.00051 * 341.86012 * 7 2 1 10 10 C 1.38207 * 125.61688 * 141.88087 * 9 7 2 11 11 C 1.46887 * 125.44164 * 359.94506 * 10 9 7 12 12 O 1.21669 * 119.99896 * 26.50768 * 11 10 9 13 13 N 1.34774 * 120.00290 * 206.50623 * 11 10 9 14 14 C 1.46928 * 120.63007 * 1.21568 * 13 11 10 15 15 C 1.53190 * 108.77234 * 126.37081 * 14 13 11 16 16 C 1.53036 * 109.31516 * 54.63877 * 15 14 13 17 17 C 1.53044 * 109.53598 * 298.63652 * 16 15 14 18 18 H 1.09002 * 109.49556 * 301.37753 * 17 16 15 19 19 N 1.46501 * 109.49635 * 181.31734 * 17 16 15 20 20 C 1.36878 * 126.40009 * 120.02541 * 19 17 16 21 21 C 1.34672 * 106.81984 * 179.97438 * 20 19 17 22 22 N 1.34126 * 108.01940 * 359.97438 * 21 20 19 23 23 C 1.30503 * 109.25540 * 0.02562 * 22 21 20 24 24 C 1.46920 * 120.63211 * 181.20046 * 13 11 10 25 25 C 1.36128 * 109.12620 * 180.20993 * 10 9 7 26 26 C 1.41703 * 107.74220 * 359.63852 * 25 10 9 27 27 C 1.40025 * 133.34694 * 180.09655 * 26 25 10 28 28 C 1.36580 * 119.83322 * 180.28964 * 27 26 25 29 29 C 1.38856 * 120.59288 * 359.97230 * 28 27 26 30 30 C 1.37843 * 120.64082 * 0.04998 * 29 28 27 31 31 C 1.37839 * 125.61684 * 321.85967 * 9 7 2 32 32 H 0.96997 * 120.00696 * 5.04868 * 1 2 3 33 33 H 1.09004 * 109.58541 * 6.58770 * 14 13 11 34 34 H 1.08999 * 109.70493 * 246.22816 * 14 13 11 35 35 H 1.09004 * 109.49976 * 294.68544 * 15 14 13 36 36 H 1.09006 * 109.52414 * 174.60446 * 15 14 13 37 37 H 1.08999 * 109.46646 * 178.61411 * 16 15 14 38 38 H 1.09009 * 109.45864 * 58.65010 * 16 15 14 39 39 H 1.08001 * 126.58919 * 359.97034 * 20 19 17 40 40 H 1.07995 * 125.98961 * 179.97438 * 21 20 19 41 41 H 1.08003 * 125.64690 * 179.73715 * 23 22 21 42 42 H 1.09004 * 109.59053 * 113.83836 * 24 13 11 43 43 H 1.09001 * 109.58589 * 353.41517 * 24 13 11 44 44 H 1.07990 * 126.13205 * 179.75781 * 25 10 9 45 45 H 1.08004 * 120.08583 * 0.30337 * 27 26 25 46 46 H 1.07995 * 119.70312 * 180.02562 * 28 27 26 47 47 H 1.08007 * 119.67826 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.09679 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6179 0.0000 4 1 2.3896 2.1073 -1.3948 5 1 1.5014 2.6200 0.8028 6 1 3.5937 1.4122 0.5921 7 6 2.0086 -1.2038 -0.0005 8 1 3.0484 -1.2268 -0.2917 9 7 1.3752 -2.3601 0.3680 10 6 1.5624 -3.6004 -0.2122 11 6 2.4740 -3.8906 -1.3268 12 8 3.4566 -3.1957 -1.5057 13 7 2.2221 -4.9265 -2.1513 14 6 1.0256 -5.7584 -1.9641 15 6 0.2490 -5.8090 -3.2836 16 6 1.1792 -6.2881 -4.4004 17 6 2.3383 -5.3015 -4.5596 18 1 1.9443 -4.3113 -4.7884 19 7 3.2111 -5.7443 -5.6497 20 6 3.5044 -5.0463 -6.7900 21 6 4.3389 -5.8161 -7.5144 22 7 4.5497 -6.9530 -6.8346 23 6 3.8772 -6.9171 -5.7168 24 6 3.1385 -5.2452 -3.2545 25 6 0.7626 -4.5092 0.4103 26 6 0.0467 -3.8297 1.4270 27 6 -0.9011 -4.2392 2.3729 28 6 -1.4315 -3.3283 3.2415 29 6 -1.0390 -1.9972 3.1965 30 6 -0.1080 -1.5701 2.2742 31 6 0.4461 -2.4792 1.3793 32 1 -0.4851 0.8367 -0.0739 33 1 0.3969 -5.3245 -1.1865 34 1 1.3208 -6.7670 -1.6750 35 1 -0.1254 -4.8138 -3.5239 36 1 -0.5890 -6.4993 -3.1869 37 1 0.6228 -6.3486 -5.3357 38 1 1.5726 -7.2729 -4.1478 39 1 3.1372 -4.0665 -7.0574 40 1 4.7637 -5.5625 -8.4743 41 1 3.8539 -7.6979 -4.9710 42 1 3.6083 -6.2117 -3.0719 43 1 3.9040 -4.4727 -3.3284 44 1 0.6885 -5.5602 0.1732 45 1 -1.2119 -5.2726 2.4156 46 1 -2.1621 -3.6465 3.9704 47 1 -1.4677 -1.2895 3.8908 48 1 0.1907 -0.5325 2.2467 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069660304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:52 Heat of formation + Delta-G solvation = 112.599109 kcal Electronic energy + Delta-G solvation = -32895.894098 eV Core-core repulsion = 28725.130799 eV Total energy + Delta-G solvation = -4170.763300 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.22076 -40.76877 -39.37192 -37.26901 -35.87624 -34.48799 -33.59927 -32.19952 -30.97278 -30.14298 -29.26390 -29.05961 -27.94066 -25.73414 -25.08897 -23.80261 -22.71126 -21.90534 -21.30814 -20.99522 -20.23980 -19.92985 -18.93908 -17.93983 -17.43632 -16.23401 -16.15934 -15.59233 -15.37439 -15.03673 -14.88163 -14.80086 -14.67736 -14.27402 -14.08965 -13.89174 -13.59331 -13.50089 -13.48446 -13.13263 -12.94099 -12.93507 -12.67836 -12.35930 -12.20925 -11.85818 -11.73851 -11.42916 -11.25527 -11.22961 -11.07017 -10.84909 -10.76092 -10.53478 -10.23887 -10.05773 -9.83995 -9.75232 -9.37161 -9.19187 -8.67710 -8.61300 -8.52024 -7.23290 -6.91257 -6.68328 -4.50866 1.76067 1.97541 2.47318 2.69863 2.94074 2.98800 3.01266 3.06469 3.11089 3.19292 3.75448 4.01881 4.25982 4.41548 4.57306 4.60051 4.61972 4.66125 4.74345 4.88452 5.00130 5.05027 5.21435 5.30281 5.33205 5.42180 5.49743 5.55410 5.63835 5.70805 5.72784 5.83681 5.90060 5.96122 6.03134 6.08203 6.21914 6.22749 6.47705 6.53979 6.64566 6.67288 6.79430 6.94091 7.02173 7.09461 7.10001 7.40468 7.51074 7.56970 7.62501 7.88207 7.99309 8.02097 8.32425 8.58775 8.79778 9.22082 10.10546 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.003075 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.809847 B = 9102.351279 C =10871.241953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.052 3.948 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.343 4.343 8 H 0.122 0.878 9 N -0.225 5.225 10 C -0.021 4.021 11 C 0.597 3.403 12 O -0.534 6.534 13 N -0.607 5.607 14 C 0.068 3.932 15 C -0.131 4.131 16 C -0.125 4.125 17 C 0.120 3.880 18 H 0.105 0.895 19 N -0.449 5.449 20 C -0.052 4.052 21 C -0.035 4.035 22 N -0.498 5.498 23 C 0.181 3.819 24 C 0.113 3.887 25 C -0.226 4.226 26 C -0.120 4.120 27 C -0.095 4.095 28 C -0.152 4.152 29 C -0.155 4.155 30 C -0.046 4.046 31 C 0.082 3.918 32 H 0.283 0.717 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -9.310 -5.751 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.161 4.161 3 Si 0.754 3.246 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.472 4.472 8 H 0.139 0.861 9 N 0.116 4.884 10 C -0.139 4.139 11 C 0.389 3.611 12 O -0.411 6.411 13 N -0.342 5.342 14 C -0.054 4.054 15 C -0.170 4.170 16 C -0.163 4.163 17 C 0.016 3.984 18 H 0.123 0.877 19 N -0.131 5.131 20 C -0.185 4.185 21 C -0.182 4.182 22 N -0.216 5.216 23 C -0.101 4.101 24 C -0.011 4.011 25 C -0.253 4.253 26 C -0.124 4.124 27 C -0.114 4.114 28 C -0.171 4.171 29 C -0.176 4.176 30 C -0.066 4.066 31 C -0.032 4.032 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.217 0.783 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.158 0.842 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.677 -9.035 -6.060 10.900 hybrid contribution -0.366 1.532 -0.053 1.576 sum -1.044 -7.503 -6.113 9.734 Atomic orbital electron populations 1.69972 1.06518 1.29590 1.38614 1.25716 0.95463 1.00845 0.94066 0.85844 0.80140 0.79490 0.79162 1.19518 1.19819 1.18285 1.20162 0.97308 0.82317 1.47397 0.86093 1.39943 1.25578 1.04975 1.17929 1.19436 1.05398 0.88757 1.00357 1.17287 0.84360 0.78656 0.80836 1.90749 1.29199 1.48264 1.72870 1.47561 1.25025 1.31800 1.29823 1.22864 0.87396 0.95508 0.99640 1.21929 0.98006 1.02819 0.94261 1.21913 0.95723 0.98460 1.00236 1.21933 0.90349 1.00324 0.85803 0.87681 1.45636 1.35831 1.15435 1.16218 1.22798 1.05797 1.00714 0.89204 1.22267 1.02377 0.92044 1.01548 1.70294 1.22917 1.23355 1.05042 1.24866 0.96225 0.90254 0.98753 1.21646 0.92632 1.02691 0.84104 1.20544 1.03830 0.98034 1.02874 1.17949 1.01540 0.93178 0.99766 1.20013 0.97541 0.98044 0.95789 1.20286 1.02309 0.93768 1.00784 1.20545 1.00564 0.95663 1.00833 1.20126 0.95579 0.98006 0.92851 1.18129 0.98125 0.94021 0.92910 0.90664 0.84418 0.91516 0.90849 0.89757 0.90993 0.90843 0.81066 0.81516 0.78287 0.91079 0.88240 0.84205 0.87828 0.87952 0.87714 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.63 10.89 55.50 0.60 -20.02 16 2 C 0.05 1.29 4.42 -17.47 -0.08 1.21 16 3 Si 0.93 19.03 29.59 -169.99 -5.03 14.00 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.34 -8.99 9.13 -15.01 -0.14 -9.13 16 8 H 0.12 3.27 6.76 -52.48 -0.35 2.92 16 9 N -0.22 -5.71 2.83 -56.08 -0.16 -5.87 16 10 C -0.02 -0.48 6.42 -82.25 -0.53 -1.01 16 11 C 0.60 12.36 7.51 -12.76 -0.10 12.26 16 12 O -0.53 -12.72 14.71 5.22 0.08 -12.64 16 13 N -0.61 -9.27 2.97 -174.24 -0.52 -9.79 16 14 C 0.07 0.82 5.28 -3.71 -0.02 0.80 16 15 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 16 C -0.13 -1.12 5.20 -26.69 -0.14 -1.26 16 17 C 0.12 1.30 3.01 -67.81 -0.20 1.10 16 18 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 19 N -0.45 -4.98 2.62 -111.33 -0.29 -5.27 16 20 C -0.05 -0.57 11.54 -16.56 -0.19 -0.77 16 21 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 22 N -0.50 -6.70 11.25 -14.66 -0.16 -6.87 16 23 C 0.18 2.06 11.48 -90.37 -1.04 1.02 16 24 C 0.11 1.47 5.83 -3.72 -0.02 1.45 16 25 C -0.23 -4.46 8.47 -39.02 -0.33 -4.79 16 26 C -0.12 -2.60 6.16 -106.89 -0.66 -3.26 16 27 C -0.09 -1.79 10.06 -39.51 -0.40 -2.19 16 28 C -0.15 -2.79 9.97 -39.95 -0.40 -3.19 16 29 C -0.16 -3.08 10.02 -39.50 -0.40 -3.48 16 30 C -0.05 -1.06 8.55 -39.41 -0.34 -1.40 16 31 C 0.08 2.01 6.08 -83.84 -0.51 1.50 16 32 H 0.28 6.59 8.31 -40.82 -0.34 6.26 16 33 H 0.14 1.94 3.45 -51.93 -0.18 1.76 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.58 7.99 -51.92 -0.41 0.16 16 39 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 43 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 44 H 0.14 2.19 5.68 -52.49 -0.30 1.89 16 45 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 48 H 0.11 2.70 6.41 -52.49 -0.34 2.37 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -31.14 385.68 -11.66 -42.80 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.13 Total: 11.07 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -5.85 Total: -13.22 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.53 Total: -47.82 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.14 -11.66 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.400 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds