Wall clock time and date at job start Tue Mar 31 2020 05:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86809 * 119.99566 * 2 1 4 4 H 1.48497 * 109.47163 * 274.98000 * 3 2 1 5 5 H 1.48501 * 109.46874 * 34.98552 * 3 2 1 6 6 H 1.48506 * 109.46732 * 154.98323 * 3 2 1 7 7 C 1.39006 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99914 * 161.86219 * 7 2 1 9 9 N 1.36893 * 120.00051 * 341.86012 * 7 2 1 10 10 C 1.38207 * 125.61688 * 141.88087 * 9 7 2 11 11 C 1.46887 * 125.44164 * 359.94506 * 10 9 7 12 12 O 1.21669 * 119.99896 * 26.50768 * 11 10 9 13 13 N 1.34774 * 120.00290 * 206.50623 * 11 10 9 14 14 C 1.46928 * 120.63007 * 1.21568 * 13 11 10 15 15 C 1.53190 * 108.77234 * 126.37081 * 14 13 11 16 16 C 1.53036 * 109.31516 * 54.63877 * 15 14 13 17 17 C 1.53044 * 109.53598 * 298.63652 * 16 15 14 18 18 H 1.09002 * 109.49556 * 301.37753 * 17 16 15 19 19 N 1.46501 * 109.49635 * 181.31734 * 17 16 15 20 20 C 1.36878 * 126.40009 * 120.02541 * 19 17 16 21 21 C 1.34672 * 106.81984 * 179.97438 * 20 19 17 22 22 N 1.34126 * 108.01940 * 359.97438 * 21 20 19 23 23 C 1.30503 * 109.25540 * 0.02562 * 22 21 20 24 24 C 1.46920 * 120.63211 * 181.20046 * 13 11 10 25 25 C 1.36128 * 109.12620 * 180.20993 * 10 9 7 26 26 C 1.41703 * 107.74220 * 359.63852 * 25 10 9 27 27 C 1.40025 * 133.34694 * 180.09655 * 26 25 10 28 28 C 1.36580 * 119.83322 * 180.28964 * 27 26 25 29 29 C 1.38856 * 120.59288 * 359.97230 * 28 27 26 30 30 C 1.37843 * 120.64082 * 0.04998 * 29 28 27 31 31 C 1.37839 * 125.61684 * 321.85967 * 9 7 2 32 32 H 0.96997 * 120.00696 * 5.04868 * 1 2 3 33 33 H 1.09004 * 109.58541 * 6.58770 * 14 13 11 34 34 H 1.08999 * 109.70493 * 246.22816 * 14 13 11 35 35 H 1.09004 * 109.49976 * 294.68544 * 15 14 13 36 36 H 1.09006 * 109.52414 * 174.60446 * 15 14 13 37 37 H 1.08999 * 109.46646 * 178.61411 * 16 15 14 38 38 H 1.09009 * 109.45864 * 58.65010 * 16 15 14 39 39 H 1.08001 * 126.58919 * 359.97034 * 20 19 17 40 40 H 1.07995 * 125.98961 * 179.97438 * 21 20 19 41 41 H 1.08003 * 125.64690 * 179.73715 * 23 22 21 42 42 H 1.09004 * 109.59053 * 113.83836 * 24 13 11 43 43 H 1.09001 * 109.58589 * 353.41517 * 24 13 11 44 44 H 1.07990 * 126.13205 * 179.75781 * 25 10 9 45 45 H 1.08004 * 120.08583 * 0.30337 * 27 26 25 46 46 H 1.07995 * 119.70312 * 180.02562 * 28 27 26 47 47 H 1.08007 * 119.67826 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.09679 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6179 0.0000 4 1 2.3896 2.1073 -1.3948 5 1 1.5014 2.6200 0.8028 6 1 3.5937 1.4122 0.5921 7 6 2.0086 -1.2038 -0.0005 8 1 3.0484 -1.2268 -0.2917 9 7 1.3752 -2.3601 0.3680 10 6 1.5624 -3.6004 -0.2122 11 6 2.4740 -3.8906 -1.3268 12 8 3.4566 -3.1957 -1.5057 13 7 2.2221 -4.9265 -2.1513 14 6 1.0256 -5.7584 -1.9641 15 6 0.2490 -5.8090 -3.2836 16 6 1.1792 -6.2881 -4.4004 17 6 2.3383 -5.3015 -4.5596 18 1 1.9443 -4.3113 -4.7884 19 7 3.2111 -5.7443 -5.6497 20 6 3.5044 -5.0463 -6.7900 21 6 4.3389 -5.8161 -7.5144 22 7 4.5497 -6.9530 -6.8346 23 6 3.8772 -6.9171 -5.7168 24 6 3.1385 -5.2452 -3.2545 25 6 0.7626 -4.5092 0.4103 26 6 0.0467 -3.8297 1.4270 27 6 -0.9011 -4.2392 2.3729 28 6 -1.4315 -3.3283 3.2415 29 6 -1.0390 -1.9972 3.1965 30 6 -0.1080 -1.5701 2.2742 31 6 0.4461 -2.4792 1.3793 32 1 -0.4851 0.8367 -0.0739 33 1 0.3969 -5.3245 -1.1865 34 1 1.3208 -6.7670 -1.6750 35 1 -0.1254 -4.8138 -3.5239 36 1 -0.5890 -6.4993 -3.1869 37 1 0.6228 -6.3486 -5.3357 38 1 1.5726 -7.2729 -4.1478 39 1 3.1372 -4.0665 -7.0574 40 1 4.7637 -5.5625 -8.4743 41 1 3.8539 -7.6979 -4.9710 42 1 3.6083 -6.2117 -3.0719 43 1 3.9040 -4.4727 -3.3284 44 1 0.6885 -5.5602 0.1732 45 1 -1.2119 -5.2726 2.4156 46 1 -2.1621 -3.6465 3.9704 47 1 -1.4677 -1.2895 3.8908 48 1 0.1907 -0.5325 2.2467 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069660304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:51 Heat of formation + Delta-G solvation = 97.191107 kcal Electronic energy + Delta-G solvation = -32896.562240 eV Core-core repulsion = 28725.130799 eV Total energy + Delta-G solvation = -4171.431441 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.11144 -42.33522 -40.72124 -38.57387 -37.45942 -35.84984 -35.08084 -33.20656 -32.58316 -31.25320 -30.67050 -30.25879 -29.31193 -26.93996 -26.82769 -24.84951 -24.05031 -22.92556 -22.59584 -22.18060 -21.63536 -21.17675 -20.24490 -19.46506 -18.51244 -17.64232 -17.60801 -17.20252 -16.70267 -16.46667 -16.12501 -16.03768 -15.82240 -15.48904 -15.12026 -15.10873 -14.82438 -14.68962 -14.59579 -14.47428 -14.37138 -14.22090 -14.01213 -13.75036 -13.61645 -13.30945 -13.14384 -12.93387 -12.68363 -12.36143 -12.25930 -12.14478 -12.02658 -11.91884 -11.73401 -11.37239 -11.02618 -10.97945 -10.89886 -10.67151 -10.29948 -9.76844 -9.47133 -8.94741 -8.62943 -8.34268 -6.39468 0.17194 1.08780 1.10205 1.26348 1.31191 1.36704 1.42225 1.49832 1.98677 2.12132 2.21481 2.39895 2.81732 3.03200 3.35816 3.38708 3.46508 3.77348 3.81006 3.86708 3.89577 4.01928 4.16531 4.25500 4.35190 4.44517 4.47694 4.52440 4.54596 4.59662 4.68819 4.72917 4.75530 4.81284 4.87186 4.96806 5.01064 5.09439 5.12244 5.21464 5.24987 5.35843 5.37182 5.47720 5.49050 5.75352 5.79128 5.92636 5.99344 6.15859 6.24188 6.26915 6.42533 6.57182 6.94855 7.11575 7.18254 7.45355 8.31677 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.003075 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.809847 B = 9102.351279 C =10871.241953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.020 3.980 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.266 1.266 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.262 5.262 10 C -0.050 4.050 11 C 0.588 3.412 12 O -0.583 6.583 13 N -0.593 5.593 14 C 0.061 3.939 15 C -0.124 4.124 16 C -0.115 4.115 17 C 0.130 3.870 18 H 0.087 0.913 19 N -0.450 5.450 20 C -0.061 4.061 21 C -0.049 4.049 22 N -0.532 5.532 23 C 0.183 3.817 24 C 0.114 3.886 25 C -0.192 4.192 26 C -0.147 4.147 27 C -0.083 4.083 28 C -0.156 4.156 29 C -0.140 4.140 30 C -0.092 4.092 31 C 0.057 3.943 32 H 0.285 0.715 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.186 0.814 40 H 0.183 0.817 41 H 0.230 0.770 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.188 0.812 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.130 0.870 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -12.871 -5.246 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.189 4.189 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.190 1.190 7 C -0.505 4.505 8 H 0.111 0.889 9 N 0.076 4.924 10 C -0.166 4.166 11 C 0.379 3.621 12 O -0.463 6.463 13 N -0.326 5.326 14 C -0.059 4.059 15 C -0.163 4.163 16 C -0.153 4.153 17 C 0.026 3.974 18 H 0.106 0.894 19 N -0.132 5.132 20 C -0.194 4.194 21 C -0.196 4.196 22 N -0.251 5.251 23 C -0.099 4.099 24 C -0.010 4.010 25 C -0.218 4.218 26 C -0.151 4.151 27 C -0.102 4.102 28 C -0.175 4.175 29 C -0.160 4.160 30 C -0.112 4.112 31 C -0.057 4.057 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.203 0.797 40 H 0.200 0.800 41 H 0.247 0.753 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.205 0.795 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.148 0.852 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.849 -12.642 -5.593 14.114 hybrid contribution 0.229 2.410 -0.156 2.426 sum -2.620 -10.232 -5.748 12.025 Atomic orbital electron populations 1.70027 1.07430 1.30144 1.40146 1.26373 0.96145 1.03020 0.93377 0.85037 0.78686 0.76234 0.79277 1.19094 1.18261 1.19006 1.19951 0.96656 0.84100 1.49748 0.88907 1.40085 1.27288 1.05477 1.19556 1.20077 1.06404 0.88594 1.01531 1.17395 0.83681 0.79610 0.81376 1.90714 1.31098 1.50358 1.74171 1.47593 1.26006 1.30213 1.28814 1.23086 0.85932 0.96294 1.00568 1.21890 0.98740 1.02490 0.93143 1.21884 0.94444 0.98645 1.00322 1.21778 0.90585 1.00524 0.84512 0.89434 1.45655 1.35963 1.15514 1.16088 1.23130 1.05719 1.01338 0.89251 1.22623 1.02631 0.91941 1.02359 1.70289 1.24191 1.24323 1.06284 1.25460 0.95176 0.90586 0.98717 1.21762 0.91958 1.02789 0.84460 1.21121 1.00881 0.99545 1.00291 1.18461 1.03034 0.92244 1.01367 1.20512 0.95451 1.00285 0.93925 1.20763 1.02669 0.92643 1.01384 1.20970 0.98360 0.97365 0.99290 1.20178 0.98512 0.97189 0.95276 1.18697 0.98134 0.95881 0.92997 0.90503 0.86405 0.87469 0.93301 0.86463 0.90079 0.88291 0.79651 0.80036 0.75343 0.88114 0.91653 0.79546 0.83489 0.83589 0.85224 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.41 10.89 21.67 0.24 -45.17 16 2 C 0.02 1.08 4.42 84.95 0.38 1.46 16 3 Si 0.99 41.71 29.59 68.60 2.03 43.74 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.38 -21.46 9.13 84.09 0.77 -20.69 16 8 H 0.09 5.59 6.76 -2.91 -0.02 5.57 16 9 N -0.26 -14.15 2.83 -331.34 -0.94 -15.09 16 10 C -0.05 -2.32 6.42 39.91 0.26 -2.06 16 11 C 0.59 25.38 7.51 86.51 0.65 26.03 16 12 O -0.58 -29.95 14.71 -4.25 -0.06 -30.02 16 13 N -0.59 -17.68 2.97 -823.39 -2.45 -20.13 16 14 C 0.06 1.28 5.28 86.36 0.46 1.73 16 15 C -0.12 -2.02 6.08 30.67 0.19 -1.84 16 16 C -0.11 -1.63 5.20 30.62 0.16 -1.47 16 17 C 0.13 2.63 3.01 45.07 0.14 2.77 16 18 H 0.09 2.09 8.08 -2.39 -0.02 2.08 16 19 N -0.45 -9.27 2.62 -506.13 -1.33 -10.60 16 20 C -0.06 -1.32 11.54 83.09 0.96 -0.36 16 21 C -0.05 -1.12 11.87 83.52 0.99 -0.13 16 22 N -0.53 -13.62 11.25 -200.31 -2.25 -15.87 16 23 C 0.18 3.73 11.48 180.26 2.07 5.80 16 24 C 0.11 2.85 5.83 86.36 0.50 3.35 16 25 C -0.19 -7.31 8.47 22.63 0.19 -7.12 16 26 C -0.15 -6.18 6.16 -21.33 -0.13 -6.31 16 27 C -0.08 -2.82 10.06 22.32 0.22 -2.60 16 28 C -0.16 -5.12 9.97 22.03 0.22 -4.90 16 29 C -0.14 -5.35 10.02 22.32 0.22 -5.13 16 30 C -0.09 -4.38 8.55 22.38 0.19 -4.18 16 31 C 0.06 2.88 6.08 39.06 0.24 3.12 16 32 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.12 2.97 3.45 -2.39 -0.01 2.96 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.98 7.99 -2.38 -0.02 0.96 16 39 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.10 1.95 7.80 -2.39 -0.02 1.93 16 43 H 0.06 2.12 7.00 -2.39 -0.02 2.11 16 44 H 0.19 5.09 5.68 -2.92 -0.02 5.08 16 45 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 47 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 48 H 0.09 4.56 6.41 -2.91 -0.02 4.54 16 Total: -1.00 -76.70 385.68 4.90 -71.80 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.99 Total: 33.85 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 8.67 Total: -12.52 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -6.73 Total: -106.86 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.70 4.90 -71.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.994 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds