Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46966 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99988 * 3 2 1 6 6 H 1.48503 * 109.47231 * 149.99728 * 3 2 1 7 7 C 1.39011 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00126 * 201.52432 * 7 2 1 9 9 N 1.36888 * 120.00265 * 21.52326 * 7 2 1 10 10 C 1.38203 * 125.62318 * 213.83156 * 9 7 2 11 11 C 1.46888 * 125.43903 * 359.96539 * 10 9 7 12 12 O 1.21669 * 120.00032 * 333.83086 * 11 10 9 13 13 N 1.34772 * 120.00530 * 153.83019 * 11 10 9 14 14 C 1.46936 * 120.62805 * 358.61640 * 13 11 10 15 15 C 1.52766 * 109.00460 * 233.58377 * 14 13 11 16 16 C 1.53033 * 109.38326 * 305.58579 * 15 14 13 17 17 C 1.53039 * 109.54142 * 61.24488 * 16 15 14 18 18 H 1.09009 * 109.52134 * 58.59916 * 17 16 15 19 19 N 1.46491 * 109.50393 * 178.67966 * 17 16 15 20 20 C 1.36886 * 126.40131 * 239.55314 * 19 17 16 21 21 C 1.34668 * 106.81668 * 179.84005 * 20 19 17 22 22 N 1.34128 * 108.02472 * 0.42006 * 21 20 19 23 23 C 1.30502 * 109.25092 * 359.73075 * 22 21 20 24 24 C 1.46929 * 120.63529 * 178.89976 * 13 11 10 25 25 C 1.36122 * 109.12858 * 180.02562 * 10 9 7 26 26 C 1.41701 * 107.74739 * 0.26447 * 25 10 9 27 27 C 1.40019 * 133.34870 * 179.73962 * 26 25 10 28 28 C 1.36575 * 119.82851 * 179.97438 * 27 26 25 29 29 C 1.38850 * 120.60096 * 359.97438 * 28 27 26 30 30 C 1.37850 * 120.63490 * 359.64391 * 29 28 27 31 31 C 1.37835 * 125.61529 * 33.83387 * 9 7 2 32 32 H 0.96995 * 120.00418 * 3.15301 * 1 2 3 33 33 H 1.08993 * 109.58346 * 353.41473 * 14 13 11 34 34 H 1.08992 * 109.58280 * 113.84523 * 14 13 11 35 35 H 1.08998 * 109.55728 * 185.55094 * 15 14 13 36 36 H 1.09002 * 109.38463 * 65.51856 * 15 14 13 37 37 H 1.09000 * 109.46385 * 301.21893 * 16 15 14 38 38 H 1.08999 * 109.44694 * 181.25522 * 16 15 14 39 39 H 1.07997 * 126.58640 * 359.97438 * 20 19 17 40 40 H 1.07999 * 125.98975 * 180.19328 * 21 20 19 41 41 H 1.08001 * 125.64616 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58255 * 246.15447 * 24 13 11 43 43 H 1.09002 * 109.58490 * 6.43398 * 24 13 11 44 44 H 1.08001 * 126.12973 * 180.02562 * 25 10 9 45 45 H 1.08004 * 120.08369 * 0.02562 * 27 26 25 46 46 H 1.08005 * 119.69925 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.68206 * 180.02562 * 29 28 27 48 48 H 1.07997 * 120.08911 * 179.86784 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.7001 7 6 2.0085 -1.2039 0.0005 8 1 3.0320 -1.2364 0.3437 9 7 1.3957 -2.3483 -0.4339 10 6 1.6166 -3.6184 0.0640 11 6 2.5495 -3.9586 1.1464 12 8 3.5164 -3.2519 1.3608 13 7 2.3344 -5.0535 1.9022 14 6 1.1550 -5.9000 1.6753 15 6 0.3982 -6.0623 2.9924 16 6 1.3536 -6.5895 4.0653 17 6 2.4881 -5.5849 4.2790 18 1 2.0713 -4.6227 4.5770 19 7 3.3847 -6.0755 5.3284 20 6 3.6790 -5.4435 6.5064 21 6 4.5359 -6.2405 7.1727 22 7 4.7661 -7.3251 6.4180 23 6 4.0798 -7.2332 5.3118 24 6 3.2715 -5.4201 2.9729 25 6 0.8328 -4.5042 -0.6098 26 6 0.0907 -3.7779 -1.5740 27 6 -0.8542 -4.1485 -2.5385 28 6 -1.4115 -3.1971 -3.3443 29 6 -1.0503 -1.8625 -3.2164 30 6 -0.1281 -1.4721 -2.2691 31 6 0.4566 -2.4236 -1.4400 32 1 -0.4850 0.8387 -0.0462 33 1 0.5047 -5.4302 0.9374 34 1 1.4717 -6.8790 1.3159 35 1 -0.4220 -6.7673 2.8574 36 1 0.0003 -5.0961 3.3024 37 1 1.7697 -7.5443 3.7438 38 1 0.8095 -6.7269 4.9998 39 1 3.2957 -4.4900 6.8386 40 1 4.9657 -6.0396 8.1429 41 1 4.0692 -7.9624 4.5152 42 1 3.7642 -6.3594 2.7214 43 1 4.0188 -4.6351 3.0890 44 1 0.7876 -5.5702 -0.4423 45 1 -1.1422 -5.1841 -2.6443 46 1 -2.1399 -3.4854 -4.0879 47 1 -1.5007 -1.1224 -3.8612 48 1 0.1480 -0.4320 -2.1786 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069660309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = 113.409803 kcal Electronic energy + Delta-G solvation = -32889.668341 eV Core-core repulsion = 28718.940196 eV Total energy + Delta-G solvation = -4170.728145 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.22316 -40.77950 -39.38409 -37.28164 -35.87666 -34.50637 -33.65205 -32.21734 -30.95728 -30.14354 -29.26643 -29.08844 -27.94809 -25.74071 -25.09041 -23.80516 -22.71934 -21.90989 -21.31368 -21.01024 -20.24194 -19.93640 -18.93314 -17.94450 -17.44372 -16.23941 -16.16661 -15.60416 -15.36516 -15.03927 -14.88974 -14.80530 -14.67855 -14.28104 -14.09420 -13.89361 -13.60075 -13.50413 -13.48820 -13.13550 -12.97958 -12.94402 -12.68526 -12.36410 -12.20974 -11.91583 -11.73801 -11.35247 -11.29155 -11.23481 -11.07242 -10.84813 -10.75875 -10.52913 -10.29430 -10.06023 -9.84793 -9.75628 -9.36365 -9.14560 -8.68301 -8.61558 -8.52474 -7.30655 -6.94561 -6.66002 -4.49377 1.75001 1.97264 2.47087 2.69196 2.95035 2.98949 3.03164 3.04767 3.10905 3.18794 3.76494 3.99450 4.25326 4.41216 4.56004 4.59994 4.62552 4.66635 4.74126 4.88358 5.00276 5.04872 5.21300 5.30082 5.33036 5.41958 5.49538 5.55103 5.63630 5.70369 5.72680 5.83483 5.89959 5.96192 6.02923 6.07877 6.21630 6.22720 6.47658 6.53474 6.64395 6.67140 6.79383 6.93733 7.01137 7.08163 7.09264 7.38999 7.50672 7.56692 7.60550 7.88256 7.99099 8.02065 8.30273 8.59005 8.79588 9.20316 10.06536 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003053 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.088679 B = 9168.787384 C =10933.681321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.051 3.949 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.341 4.341 8 H 0.124 0.876 9 N -0.223 5.223 10 C -0.025 4.025 11 C 0.597 3.403 12 O -0.535 6.535 13 N -0.607 5.607 14 C 0.068 3.932 15 C -0.132 4.132 16 C -0.125 4.125 17 C 0.120 3.880 18 H 0.105 0.895 19 N -0.449 5.449 20 C -0.052 4.052 21 C -0.034 4.034 22 N -0.498 5.498 23 C 0.181 3.819 24 C 0.113 3.887 25 C -0.226 4.226 26 C -0.119 4.119 27 C -0.095 4.095 28 C -0.152 4.152 29 C -0.157 4.157 30 C -0.046 4.046 31 C 0.077 3.923 32 H 0.283 0.717 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -9.743 5.094 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.162 4.162 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.142 0.858 9 N 0.118 4.882 10 C -0.143 4.143 11 C 0.389 3.611 12 O -0.412 6.412 13 N -0.342 5.342 14 C -0.054 4.054 15 C -0.170 4.170 16 C -0.163 4.163 17 C 0.016 3.984 18 H 0.123 0.877 19 N -0.131 5.131 20 C -0.185 4.185 21 C -0.182 4.182 22 N -0.216 5.216 23 C -0.101 4.101 24 C -0.011 4.011 25 C -0.253 4.253 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.171 4.171 29 C -0.177 4.177 30 C -0.065 4.065 31 C -0.037 4.037 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.217 0.783 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.158 0.842 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.403 -9.472 5.519 10.970 hybrid contribution -0.385 1.513 0.022 1.561 sum -0.788 -7.960 5.541 9.730 Atomic orbital electron populations 1.70059 1.06545 1.29785 1.37665 1.25664 0.95327 1.00887 0.94340 0.85902 0.80101 0.79497 0.79450 1.19138 1.20139 1.18385 1.20254 0.98725 0.83378 1.44645 0.85826 1.39985 1.25052 1.04117 1.19071 1.19389 1.05573 0.87509 1.01801 1.17286 0.84309 0.78971 0.80564 1.90749 1.30489 1.49745 1.70203 1.47564 1.25460 1.27351 1.33820 1.22773 0.88053 0.95426 0.99111 1.21858 0.97944 1.02529 0.94710 1.21908 0.95859 0.98170 1.00383 1.21926 0.90007 0.99546 0.86919 0.87682 1.45636 1.34670 1.17336 1.15488 1.22799 1.05558 1.01640 0.88509 1.22268 1.02021 0.92651 1.01293 1.70297 1.23230 1.24439 1.03636 1.24867 0.95473 0.90361 0.99392 1.21649 0.92292 1.02374 0.84787 1.20529 1.03879 0.97585 1.03322 1.17941 1.01499 0.92867 1.00034 1.20009 0.97479 0.97908 0.96017 1.20287 1.02240 0.93434 1.01146 1.20556 1.00858 0.95623 1.00692 1.20200 0.95411 0.98016 0.92911 1.18085 0.98152 0.94067 0.93393 0.90639 0.84430 0.91543 0.89712 0.90865 0.90831 0.90981 0.81062 0.81514 0.78287 0.91090 0.88240 0.84221 0.87831 0.87965 0.87721 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.39 10.64 55.50 0.59 -19.80 16 2 C 0.05 1.26 4.33 -17.47 -0.08 1.18 16 3 Si 0.93 18.96 29.61 -169.99 -5.03 13.93 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.34 -8.94 9.23 -15.01 -0.14 -9.08 16 8 H 0.12 3.35 6.61 -52.49 -0.35 3.00 16 9 N -0.22 -5.66 2.86 -56.08 -0.16 -5.82 16 10 C -0.02 -0.55 6.42 -82.25 -0.53 -1.08 16 11 C 0.60 12.35 7.52 -12.76 -0.10 12.25 16 12 O -0.54 -12.74 14.62 5.22 0.08 -12.67 16 13 N -0.61 -9.26 2.98 -174.49 -0.52 -9.78 16 14 C 0.07 0.82 5.25 -3.92 -0.02 0.80 16 15 C -0.13 -1.29 6.06 -26.83 -0.16 -1.46 16 16 C -0.12 -1.12 5.20 -26.69 -0.14 -1.25 16 17 C 0.12 1.30 3.01 -67.82 -0.20 1.10 16 18 H 0.11 1.24 8.08 -51.92 -0.42 0.82 16 19 N -0.45 -4.97 2.62 -111.34 -0.29 -5.26 16 20 C -0.05 -0.57 11.54 -16.56 -0.19 -0.76 16 21 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 22 N -0.50 -6.69 11.25 -14.66 -0.16 -6.86 16 23 C 0.18 2.06 11.48 -90.37 -1.04 1.02 16 24 C 0.11 1.46 5.83 -3.71 -0.02 1.44 16 25 C -0.23 -4.47 8.47 -39.02 -0.33 -4.80 16 26 C -0.12 -2.58 6.16 -106.89 -0.66 -3.24 16 27 C -0.10 -1.80 10.06 -39.51 -0.40 -2.20 16 28 C -0.15 -2.79 9.97 -39.96 -0.40 -3.18 16 29 C -0.16 -3.10 10.02 -39.50 -0.40 -3.50 16 30 C -0.05 -1.06 8.48 -39.41 -0.33 -1.39 16 31 C 0.08 1.89 6.12 -83.83 -0.51 1.37 16 32 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 33 H 0.14 1.94 3.47 -51.93 -0.18 1.76 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.58 7.98 -51.93 -0.41 0.16 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.07 0.79 7.81 -51.93 -0.41 0.38 16 43 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 44 H 0.14 2.19 5.69 -52.49 -0.30 1.89 16 45 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 47 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 48 H 0.11 2.72 6.12 -52.49 -0.32 2.40 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -31.09 384.89 -11.67 -42.76 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.11 Total: 11.09 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -5.85 Total: -13.40 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.55 Total: -47.52 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.09 -11.67 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.174 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds