Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46966 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99988 * 3 2 1 6 6 H 1.48503 * 109.47231 * 149.99728 * 3 2 1 7 7 C 1.39011 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00126 * 201.52432 * 7 2 1 9 9 N 1.36888 * 120.00265 * 21.52326 * 7 2 1 10 10 C 1.38203 * 125.62318 * 213.83156 * 9 7 2 11 11 C 1.46888 * 125.43903 * 359.96539 * 10 9 7 12 12 O 1.21669 * 120.00032 * 333.83086 * 11 10 9 13 13 N 1.34772 * 120.00530 * 153.83019 * 11 10 9 14 14 C 1.46936 * 120.62805 * 358.61640 * 13 11 10 15 15 C 1.52766 * 109.00460 * 233.58377 * 14 13 11 16 16 C 1.53033 * 109.38326 * 305.58579 * 15 14 13 17 17 C 1.53039 * 109.54142 * 61.24488 * 16 15 14 18 18 H 1.09009 * 109.52134 * 58.59916 * 17 16 15 19 19 N 1.46491 * 109.50393 * 178.67966 * 17 16 15 20 20 C 1.36886 * 126.40131 * 239.55314 * 19 17 16 21 21 C 1.34668 * 106.81668 * 179.84005 * 20 19 17 22 22 N 1.34128 * 108.02472 * 0.42006 * 21 20 19 23 23 C 1.30502 * 109.25092 * 359.73075 * 22 21 20 24 24 C 1.46929 * 120.63529 * 178.89976 * 13 11 10 25 25 C 1.36122 * 109.12858 * 180.02562 * 10 9 7 26 26 C 1.41701 * 107.74739 * 0.26447 * 25 10 9 27 27 C 1.40019 * 133.34870 * 179.73962 * 26 25 10 28 28 C 1.36575 * 119.82851 * 179.97438 * 27 26 25 29 29 C 1.38850 * 120.60096 * 359.97438 * 28 27 26 30 30 C 1.37850 * 120.63490 * 359.64391 * 29 28 27 31 31 C 1.37835 * 125.61529 * 33.83387 * 9 7 2 32 32 H 0.96995 * 120.00418 * 3.15301 * 1 2 3 33 33 H 1.08993 * 109.58346 * 353.41473 * 14 13 11 34 34 H 1.08992 * 109.58280 * 113.84523 * 14 13 11 35 35 H 1.08998 * 109.55728 * 185.55094 * 15 14 13 36 36 H 1.09002 * 109.38463 * 65.51856 * 15 14 13 37 37 H 1.09000 * 109.46385 * 301.21893 * 16 15 14 38 38 H 1.08999 * 109.44694 * 181.25522 * 16 15 14 39 39 H 1.07997 * 126.58640 * 359.97438 * 20 19 17 40 40 H 1.07999 * 125.98975 * 180.19328 * 21 20 19 41 41 H 1.08001 * 125.64616 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58255 * 246.15447 * 24 13 11 43 43 H 1.09002 * 109.58490 * 6.43398 * 24 13 11 44 44 H 1.08001 * 126.12973 * 180.02562 * 25 10 9 45 45 H 1.08004 * 120.08369 * 0.02562 * 27 26 25 46 46 H 1.08005 * 119.69925 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.68206 * 180.02562 * 29 28 27 48 48 H 1.07997 * 120.08911 * 179.86784 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.7001 7 6 2.0085 -1.2039 0.0005 8 1 3.0320 -1.2364 0.3437 9 7 1.3957 -2.3483 -0.4339 10 6 1.6166 -3.6184 0.0640 11 6 2.5495 -3.9586 1.1464 12 8 3.5164 -3.2519 1.3608 13 7 2.3344 -5.0535 1.9022 14 6 1.1550 -5.9000 1.6753 15 6 0.3982 -6.0623 2.9924 16 6 1.3536 -6.5895 4.0653 17 6 2.4881 -5.5849 4.2790 18 1 2.0713 -4.6227 4.5770 19 7 3.3847 -6.0755 5.3284 20 6 3.6790 -5.4435 6.5064 21 6 4.5359 -6.2405 7.1727 22 7 4.7661 -7.3251 6.4180 23 6 4.0798 -7.2332 5.3118 24 6 3.2715 -5.4201 2.9729 25 6 0.8328 -4.5042 -0.6098 26 6 0.0907 -3.7779 -1.5740 27 6 -0.8542 -4.1485 -2.5385 28 6 -1.4115 -3.1971 -3.3443 29 6 -1.0503 -1.8625 -3.2164 30 6 -0.1281 -1.4721 -2.2691 31 6 0.4566 -2.4236 -1.4400 32 1 -0.4850 0.8387 -0.0462 33 1 0.5047 -5.4302 0.9374 34 1 1.4717 -6.8790 1.3159 35 1 -0.4220 -6.7673 2.8574 36 1 0.0003 -5.0961 3.3024 37 1 1.7697 -7.5443 3.7438 38 1 0.8095 -6.7269 4.9998 39 1 3.2957 -4.4900 6.8386 40 1 4.9657 -6.0396 8.1429 41 1 4.0692 -7.9624 4.5152 42 1 3.7642 -6.3594 2.7214 43 1 4.0188 -4.6351 3.0890 44 1 0.7876 -5.5702 -0.4423 45 1 -1.1422 -5.1841 -2.6443 46 1 -2.1399 -3.4854 -4.0879 47 1 -1.5007 -1.1224 -3.8612 48 1 0.1480 -0.4320 -2.1786 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069660309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = 98.039892 kcal Electronic energy + Delta-G solvation = -32890.334831 eV Core-core repulsion = 28718.940196 eV Total energy + Delta-G solvation = -4171.394635 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.11346 -42.34508 -40.73154 -38.58737 -37.45706 -35.88516 -35.10849 -33.22496 -32.56073 -31.25586 -30.69494 -30.26086 -29.31808 -26.94407 -26.82391 -24.85062 -24.05897 -22.93547 -22.60563 -22.18072 -21.64089 -21.17659 -20.23517 -19.47026 -18.51762 -17.64496 -17.61374 -17.19764 -16.70217 -16.47203 -16.13397 -16.03688 -15.82350 -15.49405 -15.12282 -15.10717 -14.82962 -14.68555 -14.62018 -14.49826 -14.37638 -14.22212 -14.01707 -13.75816 -13.66724 -13.32634 -13.07291 -12.93351 -12.67956 -12.36571 -12.25690 -12.14846 -12.05018 -11.92381 -11.75468 -11.37805 -11.01109 -10.96433 -10.86275 -10.67429 -10.30958 -9.77343 -9.47303 -9.02836 -8.63740 -8.32335 -6.37219 0.16243 1.08499 1.09968 1.26650 1.32729 1.37192 1.41186 1.50132 1.98882 2.12579 2.21333 2.37649 2.83023 3.03071 3.35481 3.38915 3.46313 3.77019 3.80955 3.86531 3.89575 4.02137 4.16517 4.25590 4.34778 4.44830 4.47690 4.52363 4.54430 4.59541 4.68923 4.72944 4.75400 4.81130 4.87113 4.96741 5.01242 5.09441 5.11227 5.21051 5.24953 5.35687 5.37173 5.47741 5.48779 5.72896 5.78984 5.92444 5.99424 6.15534 6.24052 6.27211 6.42102 6.56372 6.95484 7.11413 7.17841 7.44088 8.28689 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003053 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.088679 B = 9168.787384 C =10933.681321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.020 3.980 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.261 5.261 10 C -0.053 4.053 11 C 0.588 3.412 12 O -0.584 6.584 13 N -0.593 5.593 14 C 0.062 3.938 15 C -0.124 4.124 16 C -0.115 4.115 17 C 0.130 3.870 18 H 0.088 0.912 19 N -0.450 5.450 20 C -0.061 4.061 21 C -0.049 4.049 22 N -0.532 5.532 23 C 0.183 3.817 24 C 0.113 3.887 25 C -0.192 4.192 26 C -0.146 4.146 27 C -0.084 4.084 28 C -0.156 4.156 29 C -0.141 4.141 30 C -0.091 4.091 31 C 0.052 3.948 32 H 0.285 0.715 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.186 0.814 40 H 0.183 0.817 41 H 0.230 0.770 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.188 0.812 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.130 0.870 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 -13.304 4.290 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.113 0.887 9 N 0.078 4.922 10 C -0.169 4.169 11 C 0.379 3.621 12 O -0.465 6.465 13 N -0.326 5.326 14 C -0.058 4.058 15 C -0.163 4.163 16 C -0.153 4.153 17 C 0.026 3.974 18 H 0.106 0.894 19 N -0.132 5.132 20 C -0.194 4.194 21 C -0.195 4.195 22 N -0.251 5.251 23 C -0.099 4.099 24 C -0.010 4.010 25 C -0.219 4.219 26 C -0.150 4.150 27 C -0.102 4.102 28 C -0.174 4.174 29 C -0.161 4.161 30 C -0.111 4.111 31 C -0.062 4.062 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.204 0.796 40 H 0.200 0.800 41 H 0.247 0.753 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.204 0.796 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.148 0.852 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.492 -13.080 4.749 14.137 hybrid contribution 0.184 2.387 0.213 2.403 sum -2.307 -10.694 4.962 12.012 Atomic orbital electron populations 1.70107 1.07437 1.30357 1.39201 1.26320 0.95988 1.03002 0.93696 0.85084 0.78514 0.76250 0.79620 1.18362 1.18760 1.19374 1.20035 0.98137 0.85205 1.47047 0.88676 1.40126 1.26785 1.04613 1.20683 1.20039 1.06507 0.87374 1.02965 1.17396 0.83617 0.80050 0.80995 1.90714 1.32368 1.51778 1.71591 1.47599 1.26438 1.25765 1.32804 1.22995 0.86627 0.95994 1.00222 1.21821 0.98635 1.02325 0.93511 1.21879 0.94641 0.98194 1.00571 1.21774 0.90197 0.99840 0.85578 0.89415 1.45656 1.34802 1.17398 1.15372 1.23131 1.05495 1.02206 0.88604 1.22623 1.02282 0.92566 1.02078 1.70291 1.24497 1.25452 1.04842 1.25459 0.94444 0.90545 0.99484 1.21765 0.91647 1.02308 0.85280 1.21106 1.00927 0.99256 1.00567 1.18454 1.03028 0.91907 1.01653 1.20505 0.95391 1.00250 0.94076 1.20764 1.02607 0.92301 1.01763 1.20983 0.98680 0.97477 0.98977 1.20262 0.98317 0.97165 0.95403 1.18660 0.98129 0.95954 0.93437 0.90441 0.86406 0.87521 0.86404 0.93281 0.88292 0.90057 0.79648 0.80033 0.75348 0.88142 0.91670 0.79574 0.83514 0.83619 0.85217 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.90 10.64 21.67 0.23 -44.66 16 2 C 0.02 1.05 4.33 84.95 0.37 1.42 16 3 Si 0.98 41.59 29.61 68.60 2.03 43.62 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.38 -21.43 9.23 84.09 0.78 -20.65 16 8 H 0.10 5.75 6.61 -2.91 -0.02 5.73 16 9 N -0.26 -14.05 2.86 -331.35 -0.95 -15.00 16 10 C -0.05 -2.44 6.42 39.91 0.26 -2.19 16 11 C 0.59 25.38 7.52 86.51 0.65 26.03 16 12 O -0.58 -30.04 14.62 -4.25 -0.06 -30.10 16 13 N -0.59 -17.66 2.98 -824.19 -2.45 -20.12 16 14 C 0.06 1.28 5.25 86.22 0.45 1.74 16 15 C -0.12 -2.01 6.06 30.53 0.19 -1.83 16 16 C -0.11 -1.62 5.20 30.62 0.16 -1.46 16 17 C 0.13 2.63 3.01 45.07 0.14 2.77 16 18 H 0.09 2.09 8.08 -2.38 -0.02 2.07 16 19 N -0.45 -9.27 2.62 -506.15 -1.33 -10.59 16 20 C -0.06 -1.32 11.54 83.09 0.96 -0.36 16 21 C -0.05 -1.12 11.87 83.52 0.99 -0.13 16 22 N -0.53 -13.61 11.25 -200.31 -2.25 -15.87 16 23 C 0.18 3.73 11.48 180.26 2.07 5.80 16 24 C 0.11 2.84 5.83 86.36 0.50 3.35 16 25 C -0.19 -7.32 8.47 22.63 0.19 -7.12 16 26 C -0.15 -6.15 6.16 -21.34 -0.13 -6.28 16 27 C -0.08 -2.84 10.06 22.31 0.22 -2.62 16 28 C -0.16 -5.11 9.97 22.03 0.22 -4.89 16 29 C -0.14 -5.39 10.02 22.32 0.22 -5.17 16 30 C -0.09 -4.36 8.48 22.38 0.19 -4.17 16 31 C 0.05 2.64 6.12 39.06 0.24 2.88 16 32 H 0.29 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.12 2.96 3.47 -2.39 -0.01 2.95 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 0.98 7.98 -2.39 -0.02 0.96 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.10 1.95 7.81 -2.38 -0.02 1.93 16 43 H 0.06 2.12 7.00 -2.39 -0.02 2.10 16 44 H 0.19 5.09 5.69 -2.91 -0.02 5.07 16 45 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 47 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 48 H 0.09 4.67 6.12 -2.91 -0.02 4.66 16 Total: -1.00 -76.58 384.89 4.88 -71.70 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 1.00 Total: 33.91 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 8.66 Total: -12.89 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -6.75 Total: -106.24 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.06 Total: -30.10 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -76.58 4.88 -71.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.741 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds