Wall clock time and date at job start Tue Mar 31 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99849 * 2 1 4 4 C 1.38757 * 120.05922 * 0.24552 * 3 2 1 5 5 C 1.38118 * 119.94430 * 180.32101 * 4 3 2 6 6 C 1.38286 * 120.05617 * 359.68177 * 5 4 3 7 7 C 1.38247 * 120.11127 * 0.02576 * 6 5 4 8 8 C 1.38165 * 120.05745 * 0.02562 * 7 6 5 9 9 S 1.76192 * 120.02836 * 179.97438 * 8 7 6 10 10 O 1.42094 * 106.40427 * 358.05721 * 9 8 7 11 11 O 1.42107 * 106.40406 * 225.13475 * 9 8 7 12 12 N 1.65601 * 107.21769 * 111.59811 * 9 8 7 13 13 C 1.46496 * 120.00214 * 113.09688 * 12 9 8 14 14 C 1.50695 * 109.46921 * 264.99789 * 13 12 9 15 15 H 1.08000 * 120.00608 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00005 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00032 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46964 * 90.00179 * 18 16 14 20 20 H 1.48496 * 109.46829 * 209.99612 * 18 16 14 21 21 H 1.48501 * 109.47159 * 329.99813 * 18 16 14 22 22 C 1.39825 * 119.99876 * 293.09446 * 12 9 8 23 23 C 1.38872 * 120.05003 * 155.76395 * 22 12 9 24 24 C 1.38125 * 119.94931 * 180.23605 * 23 22 12 25 25 C 1.38465 * 120.04755 * 359.50800 * 24 23 22 26 26 F 1.35104 * 119.94747 * 180.23674 * 25 24 23 27 27 C 1.38460 * 120.09869 * 0.47007 * 25 24 23 28 28 C 1.38121 * 120.05168 * 359.78594 * 27 25 24 29 29 H 1.09002 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47476 * 300.00161 * 1 2 3 31 31 H 1.08997 * 109.46816 * 60.00190 * 1 2 3 32 32 H 1.08000 * 120.02397 * 0.02815 * 4 3 2 33 33 H 1.08003 * 119.97060 * 179.70822 * 5 4 3 34 34 H 1.07997 * 119.94713 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.97120 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47354 * 24.99592 * 13 12 9 37 37 H 1.09003 * 109.47503 * 144.99823 * 13 12 9 38 38 H 0.96996 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.02585 * 359.95152 * 23 22 12 40 40 H 1.08000 * 119.97401 * 179.74523 * 24 23 22 41 41 H 1.08003 * 119.97268 * 179.76772 * 27 25 24 42 42 H 1.07997 * 120.02341 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0051 5 6 1.9209 3.6048 -0.0016 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 -0.0002 9 16 4.3929 -0.1915 0.0004 10 8 5.7532 0.2158 -0.0519 11 8 3.8027 -1.0553 -0.9613 12 7 4.1780 -0.9160 1.4739 13 6 3.4767 -2.1990 1.5640 14 6 2.0222 -1.9557 1.8743 15 1 1.6566 -0.9463 1.9922 16 6 1.1578 -3.0217 2.0067 17 7 -0.1116 -2.8094 2.2770 18 14 1.7899 -4.7676 1.8022 19 1 2.2393 -5.2887 3.1181 20 1 0.7018 -5.6292 1.2741 21 1 2.9309 -4.7728 0.8518 22 6 4.6659 -0.3031 2.6321 23 6 4.0948 -0.5912 3.8647 24 6 4.5753 0.0191 5.0069 25 6 5.6322 0.9098 4.9248 26 9 6.1037 1.5020 6.0439 27 6 6.2035 1.1982 3.6969 28 6 5.7228 0.5943 2.5515 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3204 0.0096 33 1 1.3340 4.5114 -0.0023 34 1 3.7922 4.6380 -0.0116 35 1 5.1344 2.5752 -0.0094 36 1 3.5621 -2.7273 0.6145 37 1 3.9214 -2.8014 2.3562 38 1 -0.7196 -3.5593 2.3706 39 1 3.2726 -1.2885 3.9297 40 1 4.1287 -0.2016 5.9652 41 1 7.0253 1.8961 3.6348 42 1 6.1684 0.8199 1.5940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:17 Heat of formation + Delta-G solvation = -77.745992 kcal Electronic energy + Delta-G solvation = -32448.132376 eV Core-core repulsion = 28015.254232 eV Total energy + Delta-G solvation = -4432.878144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.52015 -39.88979 -39.09841 -37.34116 -36.67339 -35.51361 -35.33562 -32.58049 -31.32599 -30.78269 -29.94746 -29.24962 -27.15094 -26.83613 -23.31361 -22.90923 -22.42780 -22.01528 -21.29970 -18.98668 -18.44759 -17.44618 -17.32805 -17.15932 -16.51719 -16.31921 -15.89474 -15.29923 -15.26136 -15.15057 -14.78168 -14.65649 -14.31381 -14.11753 -13.96658 -13.40793 -13.29309 -13.06128 -12.79957 -12.62061 -12.60323 -12.31528 -12.23946 -11.98097 -11.61481 -11.52432 -11.51513 -11.38888 -11.20671 -11.17843 -10.79894 -10.74334 -10.42224 -10.27347 -10.19834 -9.67010 -9.29939 -9.20518 -8.76621 -8.67535 -8.13300 -7.46039 -6.20985 -4.17913 0.69570 1.04459 1.52822 1.57354 1.63623 3.19725 3.21014 3.31263 3.35501 3.62343 3.66993 3.93180 4.11373 4.31486 4.64124 4.69122 4.87810 4.97860 5.05918 5.11285 5.19853 5.21054 5.36400 5.43902 5.55264 5.67322 5.74432 5.77773 5.82508 5.87902 6.12955 6.17929 6.22151 6.35423 6.40108 6.45737 6.54354 6.62507 6.69783 6.73859 6.81475 7.03938 7.08408 7.41760 7.50267 7.62203 8.34988 8.85956 9.39509 10.90433 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.006306 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.993664 B = 4438.902625 C = 6266.730745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.261 6.261 3 C 0.241 3.759 4 C -0.237 4.237 5 C -0.027 4.027 6 C -0.192 4.192 7 C 0.013 3.987 8 C -0.714 4.714 9 S 2.696 3.304 10 O -0.971 6.971 11 O -0.932 6.932 12 N -0.914 5.914 13 C 0.206 3.794 14 C -0.521 4.521 15 H 0.092 0.908 16 C 0.081 3.919 17 N -0.893 5.893 18 Si 0.860 3.140 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.178 3.822 23 C -0.104 4.104 24 C -0.130 4.130 25 C 0.054 3.946 26 F -0.151 7.151 27 C -0.124 4.124 28 C -0.178 4.178 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 10.473 -1.355 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.169 6.169 3 C 0.190 3.810 4 C -0.256 4.256 5 C -0.045 4.045 6 C -0.212 4.212 7 C -0.006 4.006 8 C -0.802 4.802 9 S 2.789 3.211 10 O -0.961 6.961 11 O -0.922 6.922 12 N -0.738 5.738 13 C 0.084 3.916 14 C -0.560 4.560 15 H 0.110 0.890 16 C -0.122 4.122 17 N -0.531 5.531 18 Si 0.687 3.313 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.187 1.187 22 C 0.080 3.920 23 C -0.126 4.126 24 C -0.150 4.150 25 C 0.034 3.966 26 F -0.130 7.130 27 C -0.144 4.144 28 C -0.200 4.200 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.806 9.771 -2.092 11.088 hybrid contribution -0.678 -0.170 0.568 0.900 sum 4.129 9.601 -1.524 10.562 Atomic orbital electron populations 1.23110 0.76859 1.05891 0.99535 1.86603 1.22725 1.23283 1.84332 1.18611 0.90578 0.86342 0.85435 1.21372 1.00562 0.92383 1.11277 1.21181 0.94784 0.97041 0.91524 1.21032 0.94007 0.98293 1.07829 1.20773 1.00186 0.90280 0.89338 1.30014 1.04539 1.19303 1.26352 1.01830 0.73489 0.73135 0.72604 1.93392 1.33070 1.83649 1.85989 1.93594 1.77890 1.63728 1.57001 1.55382 1.67075 1.31405 1.19973 1.19920 0.93784 0.78589 0.99278 1.21345 0.90322 0.96121 1.48213 0.88996 1.24711 0.94728 0.98348 0.94420 1.69833 1.03138 1.31545 1.48589 0.87094 0.79529 0.85638 0.79087 1.20095 1.20949 1.18674 1.17677 0.92714 0.93982 0.87630 1.21338 1.00226 1.01144 0.89915 1.21018 0.96557 0.97563 0.99845 1.17681 0.98002 0.98528 0.82429 1.91436 1.87969 1.82753 1.50801 1.20796 1.01266 1.01684 0.90623 1.22056 0.96676 0.99524 1.01725 0.86299 0.92516 0.94004 0.84697 0.85540 0.85414 0.83932 0.92612 0.94153 0.92576 0.82171 0.84951 0.84955 0.81098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.59 101.05 0.97 1.66 16 2 O -0.26 -5.24 6.15 -33.04 -0.20 -5.44 16 3 C 0.24 4.36 6.63 -39.21 -0.26 4.10 16 4 C -0.24 -3.49 9.04 -39.43 -0.36 -3.85 16 5 C -0.03 -0.34 10.04 -39.61 -0.40 -0.73 16 6 C -0.19 -2.42 10.04 -39.56 -0.40 -2.82 16 7 C 0.01 0.20 9.55 -39.60 -0.38 -0.18 16 8 C -0.71 -12.71 5.90 -39.43 -0.23 -12.94 16 9 S 2.70 53.16 4.96 -107.50 -0.53 52.63 16 10 O -0.97 -18.35 13.50 -57.17 -0.77 -19.13 16 11 O -0.93 -21.07 15.51 -63.58 -0.99 -22.06 16 12 N -0.91 -18.45 2.98 -59.79 -0.18 -18.63 16 13 C 0.21 4.57 3.71 -5.20 -0.02 4.55 16 14 C -0.52 -12.55 7.04 -34.44 -0.24 -12.79 16 15 H 0.09 2.33 6.39 -52.49 -0.34 2.00 16 16 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.89 -23.19 13.96 55.43 0.77 -22.42 16 18 Si 0.86 19.50 27.47 -169.99 -4.67 14.83 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 22 C 0.18 3.30 6.25 -83.74 -0.52 2.77 16 23 C -0.10 -1.87 9.03 -39.39 -0.36 -2.23 16 24 C -0.13 -2.06 10.02 -39.54 -0.40 -2.46 16 25 C 0.05 0.84 7.30 -39.42 -0.29 0.55 16 26 F -0.15 -2.29 17.27 2.25 0.04 -2.25 16 27 C -0.12 -1.85 10.02 -39.54 -0.40 -2.25 16 28 C -0.18 -2.97 9.17 -39.39 -0.36 -3.33 16 29 H 0.12 2.27 8.14 -51.93 -0.42 1.85 16 30 H 0.06 0.93 7.65 -51.93 -0.40 0.53 16 31 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 32 H 0.14 1.71 6.30 -52.49 -0.33 1.38 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.84 7.33 -52.48 -0.38 1.45 16 36 H 0.06 1.30 6.07 -51.93 -0.32 0.98 16 37 H 0.04 0.85 7.14 -51.93 -0.37 0.48 16 38 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.16 3.10 6.16 -52.48 -0.32 2.78 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.17 2.81 4.67 -52.52 -0.25 2.57 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -28.61 359.40 -9.23 -37.84 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.38 Total: 7.21 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -3.73 Total: -28.01 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.60 Total: -41.04 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.96 Total: -46.62 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.67 Total: 14.83 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.53 Total: 52.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.61 -9.23 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.908 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds