Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99849 * 2 1 4 4 C 1.38757 * 120.05922 * 0.24552 * 3 2 1 5 5 C 1.38118 * 119.94430 * 180.32101 * 4 3 2 6 6 C 1.38286 * 120.05617 * 359.68177 * 5 4 3 7 7 C 1.38247 * 120.11127 * 0.02576 * 6 5 4 8 8 C 1.38165 * 120.05745 * 0.02562 * 7 6 5 9 9 S 1.76192 * 120.02836 * 179.97438 * 8 7 6 10 10 O 1.42094 * 106.40427 * 358.05721 * 9 8 7 11 11 O 1.42107 * 106.40406 * 225.13475 * 9 8 7 12 12 N 1.65601 * 107.21769 * 111.59811 * 9 8 7 13 13 C 1.46496 * 120.00214 * 113.09688 * 12 9 8 14 14 C 1.50695 * 109.46921 * 264.99789 * 13 12 9 15 15 H 1.08000 * 120.00608 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00005 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00032 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46964 * 90.00179 * 18 16 14 20 20 H 1.48496 * 109.46829 * 209.99612 * 18 16 14 21 21 H 1.48501 * 109.47159 * 329.99813 * 18 16 14 22 22 C 1.39825 * 119.99876 * 293.09446 * 12 9 8 23 23 C 1.38872 * 120.05003 * 155.76395 * 22 12 9 24 24 C 1.38125 * 119.94931 * 180.23605 * 23 22 12 25 25 C 1.38465 * 120.04755 * 359.50800 * 24 23 22 26 26 F 1.35104 * 119.94747 * 180.23674 * 25 24 23 27 27 C 1.38460 * 120.09869 * 0.47007 * 25 24 23 28 28 C 1.38121 * 120.05168 * 359.78594 * 27 25 24 29 29 H 1.09002 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47476 * 300.00161 * 1 2 3 31 31 H 1.08997 * 109.46816 * 60.00190 * 1 2 3 32 32 H 1.08000 * 120.02397 * 0.02815 * 4 3 2 33 33 H 1.08003 * 119.97060 * 179.70822 * 5 4 3 34 34 H 1.07997 * 119.94713 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.97120 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47354 * 24.99592 * 13 12 9 37 37 H 1.09003 * 109.47503 * 144.99823 * 13 12 9 38 38 H 0.96996 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.02585 * 359.95152 * 23 22 12 40 40 H 1.08000 * 119.97401 * 179.74523 * 24 23 22 41 41 H 1.08003 * 119.97268 * 179.76772 * 27 25 24 42 42 H 1.07997 * 120.02341 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0051 5 6 1.9209 3.6048 -0.0016 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 -0.0002 9 16 4.3929 -0.1915 0.0004 10 8 5.7532 0.2158 -0.0519 11 8 3.8027 -1.0553 -0.9613 12 7 4.1780 -0.9160 1.4739 13 6 3.4767 -2.1990 1.5640 14 6 2.0222 -1.9557 1.8743 15 1 1.6566 -0.9463 1.9922 16 6 1.1578 -3.0217 2.0067 17 7 -0.1116 -2.8094 2.2770 18 14 1.7899 -4.7676 1.8022 19 1 2.2393 -5.2887 3.1181 20 1 0.7018 -5.6292 1.2741 21 1 2.9309 -4.7728 0.8518 22 6 4.6659 -0.3031 2.6321 23 6 4.0948 -0.5912 3.8647 24 6 4.5753 0.0191 5.0069 25 6 5.6322 0.9098 4.9248 26 9 6.1037 1.5020 6.0439 27 6 6.2035 1.1982 3.6969 28 6 5.7228 0.5943 2.5515 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3204 0.0096 33 1 1.3340 4.5114 -0.0023 34 1 3.7922 4.6380 -0.0116 35 1 5.1344 2.5752 -0.0094 36 1 3.5621 -2.7273 0.6145 37 1 3.9214 -2.8014 2.3562 38 1 -0.7196 -3.5593 2.3706 39 1 3.2726 -1.2885 3.9297 40 1 4.1287 -0.2016 5.9652 41 1 7.0253 1.8961 3.6348 42 1 6.1684 0.8199 1.5940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069739262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -93.820741 kcal Electronic energy + Delta-G solvation = -32448.829429 eV Core-core repulsion = 28015.254232 eV Total energy + Delta-G solvation = -4433.575197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.74818 -41.11897 -40.46943 -38.69823 -38.09039 -37.06698 -36.87715 -34.44469 -32.47811 -32.09490 -31.10220 -30.79733 -28.75809 -28.14450 -24.76529 -24.18414 -23.86941 -23.19156 -22.76289 -20.41989 -19.77685 -19.04209 -18.81966 -18.58177 -17.89143 -17.79237 -17.18673 -16.68844 -16.60950 -16.44764 -16.21980 -15.89114 -15.75484 -15.47853 -15.33590 -14.75647 -14.62207 -14.48362 -14.40405 -14.11826 -13.87884 -13.80103 -13.60586 -13.38606 -13.22103 -13.14414 -12.85168 -12.74846 -12.67634 -12.50046 -12.47454 -12.18147 -12.01872 -11.68744 -11.57346 -11.41723 -10.85349 -10.63089 -10.42532 -10.04193 -9.32246 -8.87718 -8.15510 -6.12984 -0.73292 -0.14303 0.25630 0.33285 0.40393 1.36840 1.42946 1.49886 1.76537 2.34463 2.42553 2.44714 2.62871 2.71859 3.16605 3.28760 3.41123 3.68222 3.84217 3.90091 3.98814 4.06931 4.17765 4.30857 4.34481 4.40102 4.44848 4.54013 4.55448 4.76278 4.78893 4.83463 4.94148 4.97222 5.08493 5.11234 5.22794 5.25759 5.34044 5.37833 5.52930 5.63316 5.66419 5.77201 6.10401 6.35924 6.42705 6.89718 7.44618 8.97345 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.006306 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.993664 B = 4438.902625 C = 6266.730745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.297 6.297 3 C 0.209 3.791 4 C -0.244 4.244 5 C -0.016 4.016 6 C -0.179 4.179 7 C 0.002 3.998 8 C -0.728 4.728 9 S 2.696 3.304 10 O -0.970 6.970 11 O -0.973 6.973 12 N -0.920 5.920 13 C 0.211 3.789 14 C -0.504 4.504 15 H 0.074 0.926 16 C 0.039 3.961 17 N -0.920 5.920 18 Si 0.900 3.100 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.158 3.842 23 C -0.120 4.120 24 C -0.125 4.125 25 C 0.057 3.943 26 F -0.145 7.145 27 C -0.111 4.111 28 C -0.179 4.179 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 13.654 -0.737 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.207 6.207 3 C 0.159 3.841 4 C -0.263 4.263 5 C -0.034 4.034 6 C -0.198 4.198 7 C -0.018 4.018 8 C -0.820 4.820 9 S 2.793 3.207 10 O -0.961 6.961 11 O -0.964 6.964 12 N -0.744 5.744 13 C 0.088 3.912 14 C -0.543 4.543 15 H 0.092 0.908 16 C -0.160 4.160 17 N -0.561 5.561 18 Si 0.726 3.274 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.186 1.186 22 C 0.061 3.939 23 C -0.142 4.142 24 C -0.144 4.144 25 C 0.037 3.963 26 F -0.124 7.124 27 C -0.130 4.130 28 C -0.200 4.200 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.189 0.811 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.151 12.930 -1.457 14.393 hybrid contribution -1.033 -0.930 0.406 1.448 sum 5.118 12.000 -1.051 13.088 Atomic orbital electron populations 1.23033 0.76326 1.04514 1.01129 1.86512 1.23615 1.25275 1.85322 1.18935 0.91023 0.86702 0.87463 1.21675 1.01417 0.92241 1.10952 1.21740 0.95276 0.97555 0.88801 1.21560 0.94141 0.99081 1.05042 1.21128 1.01333 0.89926 0.89365 1.29711 1.04361 1.19094 1.28828 1.01506 0.73599 0.73565 0.71997 1.93375 1.33126 1.83627 1.85937 1.93537 1.78657 1.65701 1.58473 1.55240 1.67242 1.31053 1.20866 1.19683 0.93030 0.79963 0.98521 1.21361 0.91178 0.95204 1.46517 0.90795 1.25221 0.94960 1.00955 0.94891 1.69923 1.03860 1.32016 1.50280 0.86442 0.78952 0.82708 0.79341 1.19071 1.21214 1.18633 1.17910 0.93813 0.95079 0.87112 1.21171 1.00402 1.01899 0.90720 1.21155 0.96485 0.96958 0.99847 1.17705 0.97662 0.98137 0.82844 1.91458 1.87811 1.82552 1.50549 1.21105 1.01292 1.01070 0.89492 1.22091 0.96127 0.99260 1.02558 0.89218 0.92393 0.90774 0.83131 0.81132 0.81224 0.82350 0.94173 0.93348 0.92794 0.84349 0.83131 0.81548 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.59 113.37 1.09 2.67 16 2 O -0.30 -12.45 6.15 -79.42 -0.49 -12.94 16 3 C 0.21 7.56 6.63 22.51 0.15 7.70 16 4 C -0.24 -6.71 9.04 22.37 0.20 -6.51 16 5 C -0.02 -0.32 10.04 22.25 0.22 -0.10 16 6 C -0.18 -3.70 10.04 22.28 0.22 -3.48 16 7 C 0.00 0.05 9.55 22.25 0.21 0.26 16 8 C -0.73 -25.72 5.90 22.37 0.13 -25.59 16 9 S 2.70 108.98 4.96 -56.49 -0.28 108.70 16 10 O -0.97 -36.67 13.50 -128.00 -1.73 -38.39 16 11 O -0.97 -46.31 15.51 -121.87 -1.89 -48.20 16 12 N -0.92 -38.25 2.98 -343.08 -1.02 -39.27 16 13 C 0.21 9.76 3.71 85.63 0.32 10.07 16 14 C -0.50 -25.36 7.04 25.60 0.18 -25.18 16 15 H 0.07 3.96 6.39 -2.91 -0.02 3.95 16 16 C 0.04 2.05 5.47 84.66 0.46 2.51 16 17 N -0.92 -49.77 13.96 21.45 0.30 -49.47 16 18 Si 0.90 41.13 27.47 68.60 1.88 43.02 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 22 C 0.16 5.86 6.25 38.17 0.24 6.10 16 23 C -0.12 -4.33 9.03 22.39 0.20 -4.13 16 24 C -0.13 -3.79 10.02 22.30 0.22 -3.57 16 25 C 0.06 1.61 7.30 22.38 0.16 1.78 16 26 F -0.14 -3.94 17.27 44.97 0.78 -3.16 16 27 C -0.11 -2.96 10.02 22.29 0.22 -2.74 16 28 C -0.18 -5.69 9.17 22.40 0.21 -5.48 16 29 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.06 1.98 7.65 -2.39 -0.02 1.96 16 31 H 0.07 2.07 7.67 -2.39 -0.02 2.05 16 32 H 0.15 3.53 6.30 -2.91 -0.02 3.51 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.16 3.66 7.33 -2.91 -0.02 3.64 16 36 H 0.04 1.98 6.07 -2.39 -0.01 1.96 16 37 H 0.05 2.12 7.14 -2.39 -0.02 2.11 16 38 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.14 5.59 6.16 -2.91 -0.02 5.57 16 40 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.17 5.43 4.67 -3.40 -0.02 5.42 16 Total: -1.00 -64.99 359.40 3.02 -61.97 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.02 Total: 23.43 kcal Atomic # 6 Polarization: -50.12 SS G_CDS: 4.45 Total: -45.67 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -0.72 Total: -88.74 kcal Atomic # 8 Polarization: -95.43 SS G_CDS: -4.11 Total: -99.54 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal Atomic # 16 Polarization: 108.98 SS G_CDS: -0.28 Total: 108.70 kcal Total: -64.99 3.02 -61.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.852 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds