Wall clock time and date at job start Tue Mar 31 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34817 * 117.00281 * 2 1 4 4 O 1.21566 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.47058 * 120.00421 * 180.02562 * 3 2 1 6 6 C 1.39031 * 120.86683 * 359.97419 * 5 3 2 7 7 C 1.39699 * 119.28773 * 180.02562 * 6 5 3 8 8 C 1.35134 * 121.15153 * 0.02996 * 7 6 5 9 9 N 1.36143 * 121.73520 * 359.95062 * 8 7 6 10 10 C 1.37012 * 132.63926 * 180.35317 * 9 8 7 11 11 C 1.34955 * 107.14350 * 180.12950 * 10 9 8 12 12 C 1.50701 * 125.69204 * 179.84370 * 11 10 9 13 13 N 1.46496 * 109.47256 * 93.69176 * 12 11 10 14 14 C 1.36940 * 119.99706 * 277.71702 * 13 12 11 15 15 H 1.08006 * 119.99723 * 138.72360 * 14 13 12 16 16 C 1.38808 * 120.00110 * 318.71627 * 14 13 12 17 17 N 1.31618 * 120.00158 * 158.11931 * 16 14 13 18 18 Si 1.86800 * 119.99804 * 338.12021 * 16 14 13 19 19 H 1.48494 * 109.47289 * 95.25293 * 18 16 14 20 20 H 1.48508 * 109.46984 * 215.25291 * 18 16 14 21 21 H 1.48498 * 109.47446 * 335.25168 * 18 16 14 22 22 C 1.46499 * 120.00383 * 97.71384 * 13 12 11 23 23 C 1.50701 * 109.47044 * 270.00367 * 22 13 12 24 24 C 1.38234 * 120.00484 * 90.00004 * 23 22 13 25 25 C 1.38231 * 120.00577 * 179.97438 * 24 23 22 26 26 C 1.38237 * 119.99698 * 0.06209 * 25 24 23 27 27 C 1.38232 * 120.00157 * 359.91266 * 26 25 24 28 28 C 1.38237 * 120.00071 * 0.04411 * 27 26 25 29 29 N 1.33753 * 108.60717 * 359.58510 * 11 10 9 30 30 C 1.31960 * 109.17117 * 0.26060 * 29 11 10 31 31 H 1.08998 * 109.46715 * 299.99600 * 1 2 3 32 32 H 1.08998 * 109.47255 * 59.99748 * 1 2 3 33 33 H 1.08994 * 109.47015 * 179.97438 * 1 2 3 34 34 H 1.08000 * 120.35500 * 0.02562 * 6 5 3 35 35 H 1.07996 * 119.42729 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.13658 * 179.97438 * 8 7 6 37 37 H 1.08000 * 126.42902 * 0.02562 * 10 9 8 38 38 H 1.09000 * 109.47543 * 333.68832 * 12 11 10 39 39 H 1.08998 * 109.46975 * 213.68635 * 12 11 10 40 40 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47369 * 150.00581 * 22 13 12 42 42 H 1.08995 * 109.46871 * 29.99921 * 22 13 12 43 43 H 1.08003 * 119.99573 * 359.69515 * 24 23 22 44 44 H 1.07997 * 120.00352 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00080 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99931 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5327 1.2782 -0.0006 6 6 4.3075 0.1238 -0.0006 7 6 5.7000 0.2354 -0.0006 8 6 6.3045 1.4440 0.0000 9 7 5.5892 2.6024 -0.0003 10 6 5.9592 3.9216 -0.0061 11 6 4.8250 4.6529 -0.0003 12 6 4.7492 6.1580 -0.0002 13 7 4.6287 6.6410 -1.3780 14 6 5.7471 6.7755 -2.1567 15 1 5.7221 6.4756 -3.1940 16 6 6.9127 7.2973 -1.6129 17 7 8.0738 7.0439 -2.1786 18 14 6.8336 8.3591 -0.0780 19 1 7.0787 7.5166 1.1199 20 1 7.8688 9.4209 -0.1568 21 1 5.4903 8.9840 0.0229 22 6 3.3117 6.9800 -1.9229 23 6 2.7042 5.7593 -2.5646 24 6 1.9179 4.9036 -1.8160 25 6 1.3602 3.7842 -2.4048 26 6 1.5899 3.5197 -3.7420 27 6 2.3757 4.3756 -4.4909 28 6 2.9327 5.4955 -3.9023 29 7 3.7794 3.8187 -0.0004 30 6 4.2179 2.5741 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.8378 -0.8487 -0.0006 35 1 6.3040 -0.6599 -0.0002 36 1 7.3834 1.4923 0.0004 37 1 6.9691 4.3044 -0.0122 38 1 5.6533 6.5673 0.4505 39 1 3.8799 6.4779 0.5742 40 1 8.8884 7.4083 -1.7984 41 1 3.4189 7.7674 -2.6689 42 1 2.6641 7.3276 -1.1180 43 1 1.7430 5.1073 -0.7699 44 1 0.7462 3.1155 -1.8198 45 1 1.1538 2.6453 -4.2022 46 1 2.5548 4.1691 -5.5357 47 1 3.5470 6.1640 -4.4872 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069740757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:09 Heat of formation + Delta-G solvation = 76.497786 kcal Electronic energy + Delta-G solvation = -34064.787175 eV Core-core repulsion = 29794.739743 eV Total energy + Delta-G solvation = -4270.047432 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.32161 -40.09873 -38.48215 -37.24892 -36.26480 -35.61770 -33.36165 -31.99197 -31.10108 -30.09271 -29.91887 -28.93214 -27.57190 -26.40610 -25.61041 -24.25275 -22.40295 -22.04953 -21.70350 -21.11272 -20.23312 -19.93499 -18.02944 -17.53531 -16.84831 -16.41232 -16.28920 -16.18044 -15.87959 -15.49436 -15.31778 -14.95479 -14.51254 -14.24044 -13.90898 -13.87466 -13.61512 -13.33782 -13.08527 -12.82988 -12.63578 -12.50386 -12.37206 -12.17173 -12.13988 -11.99901 -11.86771 -11.44096 -11.13911 -10.87480 -10.82260 -10.68733 -10.47209 -10.39480 -10.35200 -10.14366 -10.02499 -9.71819 -9.36962 -8.60874 -8.35074 -8.02846 -7.86563 -7.56476 -6.82589 -6.06144 -3.50750 0.30553 1.54073 2.17415 2.27420 2.44729 2.59463 3.04035 3.24313 3.32646 3.44051 3.50154 3.83605 4.26762 4.46888 4.50803 4.61034 4.70276 4.83346 5.01265 5.02461 5.10118 5.17617 5.35505 5.44765 5.52604 5.59497 5.66179 5.75884 5.78840 5.81732 5.83498 5.96807 6.01165 6.06912 6.17690 6.31323 6.38641 6.43082 6.47662 6.52969 6.61025 6.73755 6.84843 6.91542 7.14250 7.24884 7.36705 7.39625 7.58046 7.85867 7.91511 8.01356 8.37045 8.46047 8.92910 9.64264 10.07503 11.08566 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004523 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.182914 B = 6189.545902 C = 7755.145520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.364 6.364 3 C 0.508 3.492 4 O -0.463 6.463 5 C -0.096 4.096 6 C -0.028 4.028 7 C -0.191 4.191 8 C 0.117 3.883 9 N -0.376 5.376 10 C -0.070 4.070 11 C 0.068 3.932 12 C 0.208 3.792 13 N -0.584 5.584 14 C -0.262 4.262 15 H 0.075 0.925 16 C 0.043 3.957 17 N -0.896 5.896 18 Si 0.870 3.130 19 H -0.284 1.284 20 H -0.300 1.300 21 H -0.265 1.265 22 C 0.183 3.817 23 C -0.092 4.092 24 C -0.065 4.065 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.105 4.105 29 N -0.442 5.442 30 C 0.241 3.759 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 -15.507 5.003 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.281 6.281 3 C 0.350 3.650 4 O -0.348 6.348 5 C -0.101 4.101 6 C -0.051 4.051 7 C -0.213 4.213 8 C -0.008 4.008 9 N -0.050 5.050 10 C -0.199 4.199 11 C -0.064 4.064 12 C 0.081 3.919 13 N -0.304 5.304 14 C -0.390 4.390 15 H 0.093 0.907 16 C -0.158 4.158 17 N -0.536 5.536 18 Si 0.699 3.301 19 H -0.212 1.212 20 H -0.228 1.228 21 H -0.189 1.189 22 C 0.058 3.942 23 C -0.095 4.095 24 C -0.083 4.083 25 C -0.135 4.135 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.123 4.123 29 N -0.162 5.162 30 C -0.006 4.006 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.604 -14.703 4.984 18.255 hybrid contribution 1.196 -0.064 0.579 1.330 sum -8.409 -14.767 5.563 17.881 Atomic orbital electron populations 1.23209 0.76130 1.03336 1.02682 1.86512 1.23360 1.32904 1.85364 1.20406 0.88217 0.81660 0.74669 1.90907 1.65984 1.35191 1.42716 1.18857 0.89521 0.89477 1.12201 1.21687 0.93337 0.97825 0.92268 1.20482 0.94912 0.96669 1.09206 1.21795 0.98544 0.84373 0.96108 1.42916 1.08417 1.06257 1.47424 1.22669 1.02180 0.78976 1.16067 1.22317 0.87258 0.98557 0.98222 1.19749 1.00202 0.83890 0.88071 1.44075 1.02861 1.72953 1.10463 1.18707 0.87968 1.36714 0.95641 0.90719 1.25478 0.95312 0.97450 0.97550 1.69893 0.97386 1.44332 1.41976 0.87017 0.77935 0.81650 0.83452 1.21197 1.22784 1.18921 1.19968 0.85978 0.91855 0.96428 1.20870 0.95746 0.99194 0.93648 1.20919 0.95192 0.93411 0.98825 1.21093 1.00701 0.97631 0.94057 1.20920 1.00914 0.99366 0.94975 1.20924 0.99592 0.96031 0.99034 1.20967 0.98847 0.97347 0.95179 1.70679 1.29499 0.96432 1.19553 1.21277 0.79461 0.93449 1.06379 0.91906 0.91855 0.88307 0.83178 0.83010 0.82012 0.79931 0.91888 0.91933 0.92708 0.91651 0.93442 0.86338 0.86763 0.88080 0.87659 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.34 9.88 -40.81 -0.40 -4.74 16 3 C 0.51 7.72 7.90 34.31 0.27 7.99 16 4 O -0.46 -8.15 13.12 -19.32 -0.25 -8.41 16 5 C -0.10 -1.48 6.06 -102.66 -0.62 -2.10 16 6 C -0.03 -0.32 9.71 -38.74 -0.38 -0.69 16 7 C -0.19 -1.90 9.91 -40.14 -0.40 -2.30 16 8 C 0.12 1.46 10.88 -16.74 -0.18 1.27 16 9 N -0.38 -6.49 2.94 -61.08 -0.18 -6.67 16 10 C -0.07 -1.40 11.66 -16.40 -0.19 -1.59 16 11 C 0.07 1.45 6.58 -82.92 -0.55 0.90 16 12 C 0.21 4.57 5.33 -5.20 -0.03 4.54 16 13 N -0.58 -13.67 1.99 -175.99 -0.35 -14.02 16 14 C -0.26 -6.99 9.81 -15.06 -0.15 -7.14 16 15 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 16 C 0.04 1.17 5.33 -17.43 -0.09 1.07 16 17 N -0.90 -25.77 13.97 55.49 0.78 -24.99 16 18 Si 0.87 20.90 25.19 -169.99 -4.28 16.62 16 19 H -0.28 -6.56 6.69 56.52 0.38 -6.19 16 20 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.18 3.83 5.83 -5.19 -0.03 3.80 16 23 C -0.09 -1.89 5.46 -104.62 -0.57 -2.47 16 24 C -0.06 -1.29 7.72 -39.59 -0.31 -1.60 16 25 C -0.12 -2.19 9.34 -39.58 -0.37 -2.56 16 26 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 28 C -0.10 -2.11 9.70 -39.58 -0.38 -2.49 16 29 N -0.44 -9.21 8.21 -7.55 -0.06 -9.27 16 30 C 0.24 4.50 7.67 -154.13 -1.18 3.32 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.15 1.24 7.67 -52.49 -0.40 0.83 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.18 3.56 8.06 -52.49 -0.42 3.14 16 38 H 0.06 1.43 3.42 -51.93 -0.18 1.26 16 39 H 0.06 1.27 7.81 -51.93 -0.41 0.87 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.07 1.35 7.98 -51.93 -0.41 0.93 16 42 H 0.05 0.91 7.79 -51.93 -0.40 0.51 16 43 H 0.12 2.46 7.64 -52.48 -0.40 2.06 16 44 H 0.11 2.08 5.89 -52.49 -0.31 1.77 16 45 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 47 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -33.23 393.08 -9.62 -42.85 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.90 Total: 7.22 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -4.88 Total: -4.50 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.18 Total: -54.96 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.66 Total: -13.15 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.28 Total: 16.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.23 -9.62 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069740757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.346 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds