Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34817 * 117.00281 * 2 1 4 4 O 1.21566 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.47058 * 120.00421 * 180.02562 * 3 2 1 6 6 C 1.39031 * 120.86683 * 359.97419 * 5 3 2 7 7 C 1.39699 * 119.28773 * 180.02562 * 6 5 3 8 8 C 1.35134 * 121.15153 * 0.02996 * 7 6 5 9 9 N 1.36143 * 121.73520 * 359.95062 * 8 7 6 10 10 C 1.37012 * 132.63926 * 180.35317 * 9 8 7 11 11 C 1.34955 * 107.14350 * 180.12950 * 10 9 8 12 12 C 1.50701 * 125.69204 * 179.84370 * 11 10 9 13 13 N 1.46496 * 109.47256 * 93.69176 * 12 11 10 14 14 C 1.36940 * 119.99706 * 277.71702 * 13 12 11 15 15 H 1.08006 * 119.99723 * 138.72360 * 14 13 12 16 16 C 1.38808 * 120.00110 * 318.71627 * 14 13 12 17 17 N 1.31618 * 120.00158 * 158.11931 * 16 14 13 18 18 Si 1.86800 * 119.99804 * 338.12021 * 16 14 13 19 19 H 1.48494 * 109.47289 * 95.25293 * 18 16 14 20 20 H 1.48508 * 109.46984 * 215.25291 * 18 16 14 21 21 H 1.48498 * 109.47446 * 335.25168 * 18 16 14 22 22 C 1.46499 * 120.00383 * 97.71384 * 13 12 11 23 23 C 1.50701 * 109.47044 * 270.00367 * 22 13 12 24 24 C 1.38234 * 120.00484 * 90.00004 * 23 22 13 25 25 C 1.38231 * 120.00577 * 179.97438 * 24 23 22 26 26 C 1.38237 * 119.99698 * 0.06209 * 25 24 23 27 27 C 1.38232 * 120.00157 * 359.91266 * 26 25 24 28 28 C 1.38237 * 120.00071 * 0.04411 * 27 26 25 29 29 N 1.33753 * 108.60717 * 359.58510 * 11 10 9 30 30 C 1.31960 * 109.17117 * 0.26060 * 29 11 10 31 31 H 1.08998 * 109.46715 * 299.99600 * 1 2 3 32 32 H 1.08998 * 109.47255 * 59.99748 * 1 2 3 33 33 H 1.08994 * 109.47015 * 179.97438 * 1 2 3 34 34 H 1.08000 * 120.35500 * 0.02562 * 6 5 3 35 35 H 1.07996 * 119.42729 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.13658 * 179.97438 * 8 7 6 37 37 H 1.08000 * 126.42902 * 0.02562 * 10 9 8 38 38 H 1.09000 * 109.47543 * 333.68832 * 12 11 10 39 39 H 1.08998 * 109.46975 * 213.68635 * 12 11 10 40 40 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47369 * 150.00581 * 22 13 12 42 42 H 1.08995 * 109.46871 * 29.99921 * 22 13 12 43 43 H 1.08003 * 119.99573 * 359.69515 * 24 23 22 44 44 H 1.07997 * 120.00352 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00080 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99931 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5327 1.2782 -0.0006 6 6 4.3075 0.1238 -0.0006 7 6 5.7000 0.2354 -0.0006 8 6 6.3045 1.4440 0.0000 9 7 5.5892 2.6024 -0.0003 10 6 5.9592 3.9216 -0.0061 11 6 4.8250 4.6529 -0.0003 12 6 4.7492 6.1580 -0.0002 13 7 4.6287 6.6410 -1.3780 14 6 5.7471 6.7755 -2.1567 15 1 5.7221 6.4756 -3.1940 16 6 6.9127 7.2973 -1.6129 17 7 8.0738 7.0439 -2.1786 18 14 6.8336 8.3591 -0.0780 19 1 7.0787 7.5166 1.1199 20 1 7.8688 9.4209 -0.1568 21 1 5.4903 8.9840 0.0229 22 6 3.3117 6.9800 -1.9229 23 6 2.7042 5.7593 -2.5646 24 6 1.9179 4.9036 -1.8160 25 6 1.3602 3.7842 -2.4048 26 6 1.5899 3.5197 -3.7420 27 6 2.3757 4.3756 -4.4909 28 6 2.9327 5.4955 -3.9023 29 7 3.7794 3.8187 -0.0004 30 6 4.2179 2.5741 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.8378 -0.8487 -0.0006 35 1 6.3040 -0.6599 -0.0002 36 1 7.3834 1.4923 0.0004 37 1 6.9691 4.3044 -0.0122 38 1 5.6533 6.5673 0.4505 39 1 3.8799 6.4779 0.5742 40 1 8.8884 7.4083 -1.7984 41 1 3.4189 7.7674 -2.6689 42 1 2.6641 7.3276 -1.1180 43 1 1.7430 5.1073 -0.7699 44 1 0.7462 3.1155 -1.8198 45 1 1.1538 2.6453 -4.2022 46 1 2.5548 4.1691 -5.5357 47 1 3.5470 6.1640 -4.4872 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069740757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = 59.758934 kcal Electronic energy + Delta-G solvation = -34065.513027 eV Core-core repulsion = 29794.739743 eV Total energy + Delta-G solvation = -4270.773284 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.61029 -41.13302 -40.02849 -38.49150 -37.33116 -37.23159 -34.56361 -33.95825 -32.63341 -31.58023 -31.27027 -30.28194 -28.40804 -27.89815 -27.45579 -25.37249 -23.80392 -23.57681 -23.22762 -22.24588 -21.67351 -21.56801 -19.14252 -18.89568 -18.42762 -17.65641 -17.46681 -17.32066 -17.23571 -17.07111 -16.64827 -16.21242 -16.06266 -15.81408 -15.59576 -14.96716 -14.82487 -14.76635 -14.58718 -14.31842 -14.24794 -13.93980 -13.81755 -13.59659 -13.37386 -13.12506 -12.90872 -12.82367 -12.70385 -12.67933 -12.23056 -12.05428 -11.96644 -11.84394 -11.76988 -11.66017 -11.52058 -11.44577 -10.80169 -10.63656 -9.68371 -9.55962 -9.39929 -8.86422 -8.71601 -8.17399 -5.61022 -0.73654 0.39854 0.65307 0.75029 1.32461 1.37936 1.44809 1.49139 1.56777 1.91249 2.00033 2.44293 2.60964 3.03493 3.09846 3.13809 3.53914 3.66043 3.72978 3.86545 3.95522 4.12360 4.18867 4.29684 4.31050 4.36815 4.40241 4.41864 4.43134 4.47994 4.57878 4.67792 4.77021 4.80455 4.82881 4.92099 4.95811 4.98654 5.04951 5.07875 5.31906 5.36480 5.38558 5.49729 5.67877 5.73569 5.85357 5.93179 6.06676 6.16085 6.24305 6.34455 6.86144 6.96273 7.05228 7.59950 8.07394 9.01376 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004523 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.182914 B = 6189.545902 C = 7755.145520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.509 3.491 4 O -0.499 6.499 5 C -0.140 4.140 6 C 0.010 3.990 7 C -0.166 4.166 8 C 0.094 3.906 9 N -0.380 5.380 10 C -0.089 4.089 11 C 0.042 3.958 12 C 0.210 3.790 13 N -0.591 5.591 14 C -0.249 4.249 15 H 0.031 0.969 16 C 0.003 3.997 17 N -0.939 5.939 18 Si 0.929 3.071 19 H -0.270 1.270 20 H -0.306 1.306 21 H -0.259 1.259 22 C 0.181 3.819 23 C -0.105 4.105 24 C -0.064 4.064 25 C -0.116 4.116 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.125 4.125 29 N -0.473 5.473 30 C 0.232 3.768 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.138 0.862 34 H 0.192 0.808 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.176 0.824 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.264 0.736 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 -19.710 5.795 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.354 3.646 4 O -0.388 6.388 5 C -0.144 4.144 6 C -0.013 4.013 7 C -0.186 4.186 8 C -0.029 4.029 9 N -0.053 5.053 10 C -0.219 4.219 11 C -0.089 4.089 12 C 0.084 3.916 13 N -0.311 5.311 14 C -0.379 4.379 15 H 0.048 0.952 16 C -0.195 4.195 17 N -0.582 5.582 18 Si 0.757 3.243 19 H -0.197 1.197 20 H -0.234 1.234 21 H -0.183 1.183 22 C 0.057 3.943 23 C -0.107 4.107 24 C -0.083 4.083 25 C -0.134 4.134 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.143 4.143 29 N -0.193 5.193 30 C -0.015 4.015 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.209 0.791 35 H 0.225 0.775 36 H 0.209 0.791 37 H 0.193 0.807 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.340 -18.958 5.796 22.359 hybrid contribution 1.360 0.864 0.314 1.642 sum -8.980 -18.095 6.110 21.104 Atomic orbital electron populations 1.23528 0.74351 1.05739 1.02330 1.86489 1.24980 1.30953 1.84721 1.20491 0.88286 0.82043 0.73800 1.90888 1.66696 1.36493 1.44691 1.19097 0.90244 0.89282 1.15800 1.22336 0.93781 0.98048 0.87136 1.21214 0.94807 0.97374 1.05221 1.22667 1.00254 0.83706 0.96236 1.42938 1.08372 1.06536 1.47477 1.22456 1.01397 0.80601 1.17407 1.22065 0.88351 0.98228 1.00232 1.19630 0.99953 0.85060 0.86958 1.44072 1.02679 1.73715 1.10653 1.18383 0.89260 1.35961 0.94298 0.95164 1.25902 0.94694 0.98324 1.00531 1.69994 0.98040 1.45967 1.44154 0.86054 0.77717 0.79729 0.80754 1.19682 1.23427 1.18334 1.20024 0.85278 0.92247 0.96778 1.20793 0.96526 0.99366 0.93999 1.20776 0.95505 0.93960 0.98092 1.21205 1.00423 0.97073 0.94668 1.21245 1.00042 0.99969 0.94429 1.21202 0.98943 0.95158 1.00334 1.21046 0.99646 0.98420 0.95233 1.70574 1.29665 0.97551 1.21511 1.21842 0.80314 0.94060 1.05327 0.92259 0.92357 0.84428 0.79057 0.77498 0.79123 0.80684 0.92898 0.91024 0.92692 0.92229 0.91915 0.87635 0.86115 0.84831 0.85194 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.35 -7.35 9.88 -57.29 -0.57 -7.91 16 3 C 0.51 14.65 7.90 70.14 0.55 15.21 16 4 O -0.50 -17.51 13.12 19.62 0.26 -17.26 16 5 C -0.14 -4.00 6.06 -18.59 -0.11 -4.12 16 6 C 0.01 0.17 9.71 22.81 0.22 0.39 16 7 C -0.17 -2.38 9.91 21.91 0.22 -2.16 16 8 C 0.09 2.06 10.88 83.31 0.91 2.97 16 9 N -0.38 -12.90 2.94 -347.16 -1.02 -13.93 16 10 C -0.09 -3.67 11.66 83.13 0.97 -2.70 16 11 C 0.04 1.88 6.58 41.51 0.27 2.16 16 12 C 0.21 9.60 5.33 85.63 0.46 10.06 16 13 N -0.59 -28.94 1.99 -710.70 -1.42 -30.35 16 14 C -0.25 -14.07 9.81 84.03 0.82 -13.25 16 15 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 16 C 0.00 0.18 5.33 84.86 0.45 0.63 16 17 N -0.94 -56.27 13.97 21.65 0.30 -55.97 16 18 Si 0.93 44.62 25.19 68.60 1.73 46.34 16 19 H -0.27 -12.24 6.69 99.48 0.67 -11.57 16 20 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.18 7.97 5.83 85.63 0.50 8.47 16 23 C -0.10 -4.47 5.46 -19.86 -0.11 -4.58 16 24 C -0.06 -2.64 7.72 22.27 0.17 -2.47 16 25 C -0.12 -4.31 9.34 22.27 0.21 -4.10 16 26 C -0.14 -4.73 10.05 22.27 0.22 -4.51 16 27 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16 28 C -0.12 -5.20 9.70 22.27 0.22 -4.98 16 29 N -0.47 -20.27 8.21 -177.81 -1.46 -21.73 16 30 C 0.23 8.63 7.67 135.78 1.04 9.67 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.19 1.82 7.67 -2.91 -0.02 1.79 16 35 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.18 7.22 8.06 -2.91 -0.02 7.20 16 38 H 0.05 2.48 3.42 -2.39 -0.01 2.47 16 39 H 0.07 3.04 7.81 -2.39 -0.02 3.02 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.06 2.61 7.98 -2.39 -0.02 2.59 16 42 H 0.06 2.51 7.79 -2.39 -0.02 2.49 16 43 H 0.11 4.57 7.64 -2.91 -0.02 4.55 16 44 H 0.12 4.35 5.89 -2.91 -0.02 4.33 16 45 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 47 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -78.59 393.08 7.22 -71.37 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.96 Total: 25.84 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 8.43 Total: 3.59 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -3.59 Total: -121.98 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.31 Total: -25.17 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.73 Total: 46.34 kcal Total: -78.59 7.22 -71.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069740757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.129 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds