Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86802 * 119.99595 * 2 1 4 4 H 1.48502 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47262 * 299.99455 * 3 2 1 6 6 H 1.48504 * 109.47181 * 59.99901 * 3 2 1 7 7 C 1.38888 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99975 * 163.62121 * 7 2 1 9 9 N 1.37139 * 120.00199 * 343.62922 * 7 2 1 10 10 C 1.34773 * 120.00513 * 164.73230 * 9 7 2 11 11 O 1.21281 * 119.99948 * 174.95352 * 10 9 7 12 12 C 1.50701 * 119.99448 * 354.96073 * 10 9 7 13 13 O 1.42902 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.35662 * 117.00090 * 179.97438 * 13 12 10 15 15 C 1.39081 * 119.82306 * 359.97438 * 14 13 12 16 16 C 1.36607 * 120.03907 * 180.08478 * 15 14 13 17 17 C 1.39972 * 119.97096 * 0.02562 * 16 15 14 18 18 C 1.39789 * 120.22926 * 359.84162 * 17 16 15 19 19 C 1.38034 * 119.23921 * 0.21795 * 18 17 16 20 20 C 1.50412 * 121.62314 * 180.25942 * 18 17 16 21 21 C 1.52631 * 111.24039 * 337.40127 * 20 18 17 22 22 C 1.53435 * 109.36175 * 54.51968 * 21 20 18 23 23 C 1.47302 * 119.68934 * 179.53155 * 17 16 15 24 24 O 1.21289 * 121.16068 * 348.81922 * 23 17 16 25 25 C 1.39789 * 119.99575 * 344.73741 * 9 7 2 26 26 C 1.38963 * 120.07964 * 281.20466 * 25 9 7 27 27 C 1.38078 * 119.92288 * 179.79259 * 26 25 9 28 28 C 1.38301 * 120.08167 * 0.46488 * 27 26 25 29 29 C 1.38318 * 120.15579 * 359.79008 * 28 27 26 30 30 C 1.38079 * 120.07089 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00505 * 5.02168 * 1 2 3 32 32 H 1.08993 * 109.47483 * 59.99785 * 12 10 9 33 33 H 1.09003 * 109.46858 * 299.99068 * 12 10 9 34 34 H 1.07997 * 119.98013 * 0.10158 * 15 14 13 35 35 H 1.08003 * 120.01594 * 180.02562 * 16 15 14 36 36 H 1.07996 * 119.91695 * 179.88517 * 19 18 17 37 37 H 1.09001 * 109.12299 * 97.85371 * 20 18 17 38 38 H 1.09004 * 109.12661 * 216.94674 * 20 18 17 39 39 H 1.09001 * 109.49286 * 174.48221 * 21 20 18 40 40 H 1.08998 * 109.48918 * 294.55918 * 21 20 18 41 41 H 1.08997 * 109.87284 * 176.53282 * 22 21 20 42 42 H 1.08998 * 109.86506 * 55.47924 * 22 21 20 43 43 H 1.08000 * 120.03554 * 359.97438 * 26 25 9 44 44 H 1.08005 * 119.95866 * 180.25480 * 27 26 25 45 45 H 1.07995 * 119.92736 * 179.76516 * 28 27 26 46 46 H 1.07997 * 119.96267 * 180.02562 * 29 28 27 47 47 H 1.08012 * 120.03460 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3466 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0559 -1.2218 -0.2632 9 7 1.3649 -2.3663 0.3358 10 6 1.9288 -3.5558 0.0473 11 8 1.4049 -4.5826 0.4243 12 6 3.2105 -3.6100 -0.7436 13 8 3.6053 -4.9722 -0.9179 14 6 4.7475 -5.1982 -1.6142 15 6 5.4730 -4.1248 -2.1201 16 6 6.6228 -4.3473 -2.8233 17 6 7.0706 -5.6564 -3.0353 18 6 6.3468 -6.7388 -2.5268 19 6 5.1859 -6.5007 -1.8189 20 6 6.8022 -8.1577 -2.7309 21 6 7.7252 -8.2735 -3.9410 22 6 8.8903 -7.2868 -3.7883 23 6 8.3057 -5.8896 -3.8034 24 8 8.8363 -4.9939 -4.4257 25 6 0.1235 -2.3184 0.9767 26 6 0.0531 -2.0585 2.3400 27 6 -1.1750 -2.0076 2.9690 28 6 -2.3338 -2.2245 2.2458 29 6 -2.2673 -2.4887 0.8897 30 6 -1.0428 -2.5362 0.2533 31 1 -0.4851 0.8368 -0.0735 32 1 3.9915 -3.0715 -0.2071 33 1 3.0552 -3.1487 -1.7190 34 1 5.1273 -3.1148 -1.9565 35 1 7.1861 -3.5134 -3.2156 36 1 4.6172 -7.3289 -1.4228 37 1 7.3356 -8.4930 -1.8415 38 1 5.9305 -8.7940 -2.8845 39 1 8.1152 -9.2894 -4.0051 40 1 7.1673 -8.0398 -4.8477 41 1 9.5875 -7.4055 -4.6177 42 1 9.4038 -7.4633 -2.8433 43 1 0.9578 -1.8935 2.9063 44 1 -1.2306 -1.8016 4.0278 45 1 -3.2928 -2.1879 2.7411 46 1 -3.1741 -2.6572 0.3279 47 1 -0.9915 -2.7430 -0.8056 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069776290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = -48.238723 kcal Electronic energy + Delta-G solvation = -31610.170687 eV Core-core repulsion = 27302.421522 eV Total energy + Delta-G solvation = -4307.749165 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 5.91 seconds Orbital eigenvalues (eV) -40.75378 -39.73501 -39.05118 -37.62296 -36.95078 -35.31204 -34.83573 -31.84825 -31.60528 -30.12797 -29.95541 -29.43563 -28.38155 -27.08858 -25.10462 -23.52538 -23.03979 -21.97433 -21.60240 -21.33240 -19.55724 -19.16346 -18.03261 -17.81439 -16.67377 -16.55093 -15.96404 -15.82948 -15.55729 -15.38292 -14.82831 -14.74968 -14.69060 -14.48029 -14.32010 -14.05529 -13.67896 -13.54749 -13.42726 -13.09673 -13.00445 -12.80445 -12.63330 -12.49813 -12.01692 -11.91728 -11.69509 -11.59417 -11.42307 -11.31799 -11.27570 -11.07663 -10.82029 -10.72734 -10.62876 -10.42272 -10.35825 -9.70622 -9.56878 -8.97028 -8.76094 -8.28895 -8.21579 -7.93807 -7.67132 -6.40164 -4.20601 0.67636 1.26392 2.32982 2.37105 2.44236 2.96204 3.04362 3.11817 3.13461 3.51203 3.66062 3.90666 3.94291 4.34836 4.44821 4.61070 4.64159 4.71306 4.75319 4.92308 4.93296 5.01439 5.15496 5.22068 5.29559 5.35448 5.48712 5.50390 5.61275 5.64710 5.71598 5.73954 5.76727 5.79767 5.84286 5.93167 5.95764 6.15958 6.28627 6.33708 6.34446 6.49559 6.60419 6.71573 6.97176 7.11926 7.25380 7.38777 7.42345 7.45288 7.47989 7.66285 7.86292 8.26736 8.81333 9.14173 9.57309 10.44003 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.002292 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.195339 B =12211.366263 C =13822.445819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.049 3.951 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.406 5.406 10 C 0.465 3.535 11 O -0.575 6.575 12 C 0.060 3.940 13 O -0.284 6.284 14 C 0.182 3.818 15 C -0.229 4.229 16 C -0.015 4.015 17 C -0.225 4.225 18 C 0.009 3.991 19 C -0.174 4.174 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.165 4.165 23 C 0.405 3.595 24 O -0.466 6.466 25 C 0.236 3.764 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.143 4.143 29 C -0.121 4.121 30 C -0.066 4.066 31 H 0.274 0.726 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -9.928 -3.688 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.490 4.490 8 H 0.120 0.880 9 N -0.124 5.124 10 C 0.253 3.747 11 O -0.458 6.458 12 C -0.018 4.018 13 O -0.195 6.195 14 C 0.133 3.867 15 C -0.248 4.248 16 C -0.033 4.033 17 C -0.227 4.227 18 C 0.008 3.992 19 C -0.193 4.193 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.202 4.202 23 C 0.284 3.716 24 O -0.342 6.342 25 C 0.146 3.854 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.161 4.161 29 C -0.140 4.140 30 C -0.085 4.085 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.393 -9.944 -3.674 14.163 hybrid contribution 0.336 1.584 -0.052 1.620 sum 9.729 -8.360 -3.726 13.358 Atomic orbital electron populations 1.69940 1.05825 1.28162 1.43506 1.25275 0.95473 0.99805 0.95413 0.85965 0.79725 0.81403 0.78241 1.19124 1.20452 1.20270 1.19616 0.95267 0.83342 1.50801 0.87969 1.41169 1.16379 1.04942 1.49865 1.19422 0.86995 0.83647 0.84618 1.90630 1.65360 1.33257 1.56545 1.22506 0.97363 0.80213 1.01734 1.86117 1.36790 1.28867 1.67709 1.19450 0.85003 0.93954 0.88262 1.21160 0.98562 0.99392 1.05686 1.20883 0.93711 0.96132 0.92552 1.20046 1.00299 0.93737 1.08579 1.19749 0.92324 0.94650 0.92451 1.20322 0.98635 0.94852 1.05469 1.20515 1.00392 0.92396 0.99202 1.21493 0.95541 0.99385 0.98589 1.22309 0.99235 0.93909 1.04785 1.22554 0.83101 0.89561 0.76382 1.90526 1.60064 1.47217 1.36424 1.17043 0.84784 0.93610 0.89953 1.20973 0.97190 1.01795 0.94080 1.20666 0.92501 1.02328 0.98647 1.20761 0.97215 1.03643 0.94521 1.20692 0.96636 1.02097 0.94568 1.20802 0.91617 0.97628 0.98463 0.91454 0.89582 0.89054 0.84293 0.84855 0.84406 0.89397 0.89527 0.90137 0.91097 0.89029 0.88097 0.87432 0.87504 0.87663 0.87465 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.66 10.34 55.49 0.57 -20.09 16 2 C 0.05 1.16 5.24 -17.49 -0.09 1.07 16 3 Si 0.92 18.35 29.59 -169.99 -5.03 13.32 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.36 -8.52 9.19 -14.94 -0.14 -8.66 16 8 H 0.10 2.17 6.46 -52.49 -0.34 1.84 16 9 N -0.41 -9.76 2.66 -58.98 -0.16 -9.92 16 10 C 0.46 10.87 7.66 -10.99 -0.08 10.79 16 11 O -0.57 -15.14 16.48 -14.35 -0.24 -15.38 16 12 C 0.06 1.12 3.75 36.01 0.14 1.25 16 13 O -0.28 -5.28 9.65 -38.60 -0.37 -5.65 16 14 C 0.18 2.78 6.69 -39.00 -0.26 2.52 16 15 C -0.23 -3.21 8.97 -39.86 -0.36 -3.57 16 16 C -0.01 -0.19 9.55 -39.52 -0.38 -0.57 16 17 C -0.23 -2.79 5.82 -104.98 -0.61 -3.40 16 18 C 0.01 0.10 5.78 -104.26 -0.60 -0.50 16 19 C -0.17 -2.27 9.60 -39.39 -0.38 -2.65 16 20 C -0.09 -0.65 5.70 -28.21 -0.16 -0.81 16 21 C -0.11 -0.72 5.90 -26.69 -0.16 -0.88 16 22 C -0.16 -1.26 6.18 -27.28 -0.17 -1.43 16 23 C 0.40 4.75 6.88 -30.25 -0.21 4.54 16 24 O -0.47 -6.91 17.25 5.55 0.10 -6.81 16 25 C 0.24 5.70 2.29 -83.69 -0.19 5.51 16 26 C -0.12 -2.72 9.95 -39.37 -0.39 -3.11 16 27 C -0.12 -2.42 10.04 -39.62 -0.40 -2.82 16 28 C -0.14 -2.70 10.04 -39.53 -0.40 -3.09 16 29 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 30 C -0.07 -1.52 8.66 -39.37 -0.34 -1.86 16 31 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 32 H 0.09 1.45 7.03 -51.93 -0.37 1.09 16 33 H 0.09 1.59 7.64 -51.93 -0.40 1.19 16 34 H 0.14 1.82 6.27 -52.49 -0.33 1.50 16 35 H 0.13 1.66 7.71 -52.48 -0.40 1.26 16 36 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 44 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -30.62 395.79 -10.78 -41.40 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.04 Total: 7.66 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -5.58 Total: -10.50 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.42 Total: -30.01 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.51 Total: -27.84 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.62 -10.78 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.839 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.91 seconds