Wall clock time and date at job start Tue Mar 31 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86802 * 119.99595 * 2 1 4 4 H 1.48502 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47262 * 299.99455 * 3 2 1 6 6 H 1.48504 * 109.47181 * 59.99901 * 3 2 1 7 7 C 1.38888 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99975 * 163.62121 * 7 2 1 9 9 N 1.37139 * 120.00199 * 343.62922 * 7 2 1 10 10 C 1.34773 * 120.00513 * 164.73230 * 9 7 2 11 11 O 1.21281 * 119.99948 * 174.95352 * 10 9 7 12 12 C 1.50701 * 119.99448 * 354.96073 * 10 9 7 13 13 O 1.42902 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.35662 * 117.00090 * 179.97438 * 13 12 10 15 15 C 1.39081 * 119.82306 * 359.97438 * 14 13 12 16 16 C 1.36607 * 120.03907 * 180.08478 * 15 14 13 17 17 C 1.39972 * 119.97096 * 0.02562 * 16 15 14 18 18 C 1.39789 * 120.22926 * 359.84162 * 17 16 15 19 19 C 1.38034 * 119.23921 * 0.21795 * 18 17 16 20 20 C 1.50412 * 121.62314 * 180.25942 * 18 17 16 21 21 C 1.52631 * 111.24039 * 337.40127 * 20 18 17 22 22 C 1.53435 * 109.36175 * 54.51968 * 21 20 18 23 23 C 1.47302 * 119.68934 * 179.53155 * 17 16 15 24 24 O 1.21289 * 121.16068 * 348.81922 * 23 17 16 25 25 C 1.39789 * 119.99575 * 344.73741 * 9 7 2 26 26 C 1.38963 * 120.07964 * 281.20466 * 25 9 7 27 27 C 1.38078 * 119.92288 * 179.79259 * 26 25 9 28 28 C 1.38301 * 120.08167 * 0.46488 * 27 26 25 29 29 C 1.38318 * 120.15579 * 359.79008 * 28 27 26 30 30 C 1.38079 * 120.07089 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00505 * 5.02168 * 1 2 3 32 32 H 1.08993 * 109.47483 * 59.99785 * 12 10 9 33 33 H 1.09003 * 109.46858 * 299.99068 * 12 10 9 34 34 H 1.07997 * 119.98013 * 0.10158 * 15 14 13 35 35 H 1.08003 * 120.01594 * 180.02562 * 16 15 14 36 36 H 1.07996 * 119.91695 * 179.88517 * 19 18 17 37 37 H 1.09001 * 109.12299 * 97.85371 * 20 18 17 38 38 H 1.09004 * 109.12661 * 216.94674 * 20 18 17 39 39 H 1.09001 * 109.49286 * 174.48221 * 21 20 18 40 40 H 1.08998 * 109.48918 * 294.55918 * 21 20 18 41 41 H 1.08997 * 109.87284 * 176.53282 * 22 21 20 42 42 H 1.08998 * 109.86506 * 55.47924 * 22 21 20 43 43 H 1.08000 * 120.03554 * 359.97438 * 26 25 9 44 44 H 1.08005 * 119.95866 * 180.25480 * 27 26 25 45 45 H 1.07995 * 119.92736 * 179.76516 * 28 27 26 46 46 H 1.07997 * 119.96267 * 180.02562 * 29 28 27 47 47 H 1.08012 * 120.03460 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3466 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0559 -1.2218 -0.2632 9 7 1.3649 -2.3663 0.3358 10 6 1.9288 -3.5558 0.0473 11 8 1.4049 -4.5826 0.4243 12 6 3.2105 -3.6100 -0.7436 13 8 3.6053 -4.9722 -0.9179 14 6 4.7475 -5.1982 -1.6142 15 6 5.4730 -4.1248 -2.1201 16 6 6.6228 -4.3473 -2.8233 17 6 7.0706 -5.6564 -3.0353 18 6 6.3468 -6.7388 -2.5268 19 6 5.1859 -6.5007 -1.8189 20 6 6.8022 -8.1577 -2.7309 21 6 7.7252 -8.2735 -3.9410 22 6 8.8903 -7.2868 -3.7883 23 6 8.3057 -5.8896 -3.8034 24 8 8.8363 -4.9939 -4.4257 25 6 0.1235 -2.3184 0.9767 26 6 0.0531 -2.0585 2.3400 27 6 -1.1750 -2.0076 2.9690 28 6 -2.3338 -2.2245 2.2458 29 6 -2.2673 -2.4887 0.8897 30 6 -1.0428 -2.5362 0.2533 31 1 -0.4851 0.8368 -0.0735 32 1 3.9915 -3.0715 -0.2071 33 1 3.0552 -3.1487 -1.7190 34 1 5.1273 -3.1148 -1.9565 35 1 7.1861 -3.5134 -3.2156 36 1 4.6172 -7.3289 -1.4228 37 1 7.3356 -8.4930 -1.8415 38 1 5.9305 -8.7940 -2.8845 39 1 8.1152 -9.2894 -4.0051 40 1 7.1673 -8.0398 -4.8477 41 1 9.5875 -7.4055 -4.6177 42 1 9.4038 -7.4633 -2.8433 43 1 0.9578 -1.8935 2.9063 44 1 -1.2306 -1.8016 4.0278 45 1 -3.2928 -2.1879 2.7411 46 1 -3.1741 -2.6572 0.3279 47 1 -0.9915 -2.7430 -0.8056 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069776290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:11 Heat of formation + Delta-G solvation = -61.879764 kcal Electronic energy + Delta-G solvation = -31610.762207 eV Core-core repulsion = 27302.421522 eV Total energy + Delta-G solvation = -4308.340684 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -41.84356 -41.25049 -40.34809 -39.02794 -38.27539 -36.67600 -36.08981 -33.66530 -32.60797 -31.59144 -31.42845 -30.69329 -29.41478 -28.36343 -26.90434 -24.46175 -24.10605 -23.28506 -23.20612 -22.41599 -21.22842 -20.23820 -19.54276 -19.10311 -17.99515 -17.57267 -17.43803 -17.22828 -17.10236 -16.58228 -16.25562 -16.19318 -15.94559 -15.67242 -15.54686 -15.20714 -14.88274 -14.76219 -14.52112 -14.38446 -14.13442 -14.11098 -14.05108 -13.72169 -13.44650 -13.28013 -13.09390 -12.92271 -12.81788 -12.69387 -12.24222 -12.17135 -12.06048 -12.01179 -11.98043 -11.85076 -11.74502 -11.31786 -10.60048 -10.58046 -10.08176 -9.93178 -9.59398 -9.37089 -9.34999 -8.17124 -6.04808 -0.34310 0.25026 0.73520 0.79072 1.33361 1.35879 1.45084 1.55851 1.70298 1.77255 2.26621 2.65427 2.95308 3.02662 3.12018 3.21380 3.60713 3.62932 3.83311 3.92284 4.02244 4.10040 4.12423 4.13645 4.18744 4.23626 4.27184 4.35437 4.37838 4.43196 4.57594 4.73090 4.79605 4.81451 4.88210 4.91305 5.05065 5.06013 5.10284 5.21541 5.25533 5.31849 5.33109 5.34249 5.36753 5.60909 5.61730 5.75460 5.78369 5.96913 6.17139 6.24499 6.51972 6.52378 6.99529 7.35503 7.78001 8.65257 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.002292 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.195339 B =12211.366263 C =13822.445819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.011 3.989 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.380 4.380 8 H 0.118 0.882 9 N -0.411 5.411 10 C 0.449 3.551 11 O -0.616 6.616 12 C 0.075 3.925 13 O -0.309 6.309 14 C 0.153 3.847 15 C -0.235 4.235 16 C -0.025 4.025 17 C -0.234 4.234 18 C 0.022 3.978 19 C -0.180 4.180 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.158 4.158 23 C 0.403 3.597 24 O -0.504 6.504 25 C 0.207 3.793 26 C -0.147 4.147 27 C -0.120 4.120 28 C -0.138 4.138 29 C -0.121 4.121 30 C -0.094 4.094 31 H 0.272 0.728 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.149 0.851 46 H 0.136 0.864 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.666 -10.942 -3.431 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.505 4.505 8 H 0.136 0.864 9 N -0.128 5.128 10 C 0.239 3.761 11 O -0.503 6.503 12 C -0.003 4.003 13 O -0.221 6.221 14 C 0.107 3.893 15 C -0.253 4.253 16 C -0.044 4.044 17 C -0.235 4.235 18 C 0.022 3.978 19 C -0.198 4.198 20 C -0.126 4.126 21 C -0.145 4.145 22 C -0.195 4.195 23 C 0.285 3.715 24 O -0.383 6.383 25 C 0.117 3.883 26 C -0.167 4.167 27 C -0.138 4.138 28 C -0.156 4.156 29 C -0.139 4.139 30 C -0.113 4.113 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.154 0.846 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.377 -10.966 -3.424 15.481 hybrid contribution 0.013 1.839 -0.142 1.845 sum 10.391 -9.126 -3.566 14.282 Atomic orbital electron populations 1.70096 1.07079 1.28531 1.44025 1.26070 0.96173 1.02484 0.94861 0.84988 0.79176 0.77337 0.77637 1.17807 1.20421 1.20832 1.20070 0.96118 0.83447 1.50914 0.86441 1.41432 1.16568 1.05370 1.49456 1.20178 0.88280 0.83009 0.84653 1.90569 1.66918 1.34417 1.58363 1.22258 0.95498 0.81133 1.01397 1.86065 1.38606 1.28296 1.69140 1.19755 0.84711 0.95370 0.89511 1.21177 0.98845 0.99285 1.06007 1.21019 0.93572 0.97098 0.92675 1.20403 1.00954 0.93756 1.08392 1.20164 0.90804 0.96546 0.90305 1.20596 0.99377 0.94200 1.05642 1.20696 1.01543 0.89613 1.00736 1.21530 0.94643 1.00721 0.97581 1.22368 0.99867 0.90875 1.06400 1.23167 0.82347 0.91109 0.74923 1.90515 1.60916 1.48874 1.37972 1.17398 0.85124 0.94892 0.90920 1.21136 0.98437 1.03355 0.93760 1.21104 0.91650 1.00662 1.00400 1.21236 0.98790 1.01612 0.93924 1.21083 0.96469 1.00745 0.95642 1.20836 0.92963 0.99757 0.97774 0.91737 0.88037 0.88239 0.84111 0.84661 0.83488 0.87082 0.88020 0.86767 0.91893 0.87939 0.85916 0.88074 0.84071 0.83334 0.84591 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.28 10.34 21.65 0.22 -43.06 16 2 C 0.01 0.50 5.24 84.91 0.44 0.95 16 3 Si 0.99 37.74 29.59 68.60 2.03 39.77 16 4 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.38 -18.23 9.19 84.02 0.77 -17.46 16 8 H 0.12 5.07 6.46 -2.91 -0.02 5.05 16 9 N -0.41 -20.69 2.66 -458.90 -1.22 -21.91 16 10 C 0.45 22.13 7.66 87.66 0.67 22.80 16 11 O -0.62 -34.35 16.48 16.00 0.26 -34.09 16 12 C 0.07 2.93 3.75 71.24 0.27 3.20 16 13 O -0.31 -12.02 9.65 -70.75 -0.68 -12.70 16 14 C 0.15 4.84 6.69 22.64 0.15 4.99 16 15 C -0.23 -6.77 8.97 22.09 0.20 -6.58 16 16 C -0.03 -0.68 9.55 22.31 0.21 -0.47 16 17 C -0.23 -5.61 5.82 -20.10 -0.12 -5.73 16 18 C 0.02 0.46 5.78 -19.63 -0.11 0.35 16 19 C -0.18 -4.63 9.60 22.39 0.21 -4.41 16 20 C -0.09 -1.01 5.70 29.63 0.17 -0.84 16 21 C -0.11 -0.96 5.90 30.62 0.18 -0.78 16 22 C -0.16 -1.91 6.18 30.24 0.19 -1.72 16 23 C 0.40 8.94 6.88 28.31 0.19 9.13 16 24 O -0.50 -14.79 17.25 -3.06 -0.05 -14.85 16 25 C 0.21 10.34 2.29 38.22 0.09 10.43 16 26 C -0.15 -6.77 9.95 22.41 0.22 -6.55 16 27 C -0.12 -4.56 10.04 22.25 0.22 -4.34 16 28 C -0.14 -4.89 10.04 22.30 0.22 -4.66 16 29 C -0.12 -4.77 10.04 22.25 0.22 -4.55 16 30 C -0.09 -4.49 8.66 22.41 0.19 -4.29 16 31 H 0.27 13.08 8.32 -92.71 -0.77 12.31 16 32 H 0.10 3.56 7.03 -2.39 -0.02 3.55 16 33 H 0.10 3.64 7.64 -2.39 -0.02 3.62 16 34 H 0.14 3.86 6.27 -2.91 -0.02 3.84 16 35 H 0.14 3.49 7.71 -2.91 -0.02 3.47 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.92 8.11 -2.38 -0.02 0.90 16 39 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 46 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 47 H 0.08 4.25 8.06 -2.90 -0.02 4.23 16 Total: -1.00 -70.64 395.79 6.17 -64.47 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 1.00 Total: 32.90 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.61 Total: -10.53 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -1.00 Total: -64.97 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.47 Total: -61.64 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -70.64 6.17 -64.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.594 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds