Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48495 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47049 * 300.00153 * 3 2 1 6 6 H 1.48502 * 109.46898 * 59.99940 * 3 2 1 7 7 C 1.39040 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00137 * 207.13269 * 7 2 1 9 9 N 1.36881 * 119.99614 * 27.13956 * 7 2 1 10 10 C 1.46501 * 119.99676 * 218.66117 * 9 7 2 11 11 C 1.50696 * 109.47069 * 48.20534 * 10 9 7 12 12 C 1.38233 * 120.00464 * 85.51458 * 11 10 9 13 13 C 1.38233 * 120.00215 * 179.97438 * 12 11 10 14 14 C 1.38232 * 120.00442 * 0.06756 * 13 12 11 15 15 C 1.38239 * 119.99576 * 359.90840 * 14 13 12 16 16 C 1.38234 * 119.99989 * 265.49102 * 11 10 9 17 17 C 1.34774 * 120.00275 * 38.66378 * 9 7 2 18 18 O 1.21618 * 120.00029 * 353.19298 * 17 9 7 19 19 C 1.47552 * 120.00107 * 173.19565 * 17 9 7 20 20 C 1.39782 * 120.07492 * 49.19810 * 19 17 9 21 21 C 1.37711 * 119.95784 * 179.74301 * 20 19 17 22 22 C 1.39032 * 120.11710 * 0.52952 * 21 20 19 23 23 N 1.39888 * 119.92572 * 179.74294 * 22 21 20 24 24 C 1.35824 * 126.10528 * 359.97438 * 23 22 21 25 25 C 1.35295 * 107.61956 * 180.02562 * 24 23 22 26 26 C 1.39943 * 107.96905 * 359.97438 * 25 24 23 27 27 N 1.30847 * 108.36425 * 359.71879 * 26 25 24 28 28 C 1.39252 * 120.14495 * 359.72630 * 22 21 20 29 29 F 1.35102 * 119.97983 * 179.97438 * 28 22 21 30 30 C 1.37921 * 120.03750 * 0.02562 * 28 22 21 31 31 H 0.97000 * 120.00007 * 4.98023 * 1 2 3 32 32 H 1.08995 * 109.47189 * 288.20012 * 10 9 7 33 33 H 1.09006 * 109.47120 * 168.19875 * 10 9 7 34 34 H 1.08007 * 119.99699 * 359.69743 * 12 11 10 35 35 H 1.08008 * 120.00211 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.00588 * 179.97438 * 14 13 12 37 37 H 1.08000 * 120.00022 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.00036 * 0.02562 * 16 11 10 39 39 H 1.08003 * 120.02006 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.94347 * 180.25332 * 21 20 19 41 41 H 1.08004 * 126.18843 * 359.97438 * 24 23 22 42 42 H 1.08002 * 126.01959 * 180.02562 * 25 24 23 43 43 H 1.08005 * 125.81904 * 180.02562 * 26 25 24 44 44 H 1.08007 * 120.05195 * 179.97438 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8890 2.3964 -1.2124 6 1 1.8890 2.3964 1.2125 7 6 2.0090 -1.2041 0.0005 8 1 2.9998 -1.2554 0.4271 9 7 1.4375 -2.3245 -0.5397 10 6 1.6294 -3.6270 0.1028 11 6 1.3549 -3.5040 1.5794 12 6 0.0619 -3.6201 2.0542 13 6 -0.1897 -3.5078 3.4088 14 6 0.8515 -3.2780 4.2886 15 6 2.1446 -3.1623 3.8139 16 6 2.3963 -3.2755 2.4593 17 6 0.6985 -2.2294 -1.6627 18 8 0.4357 -1.1364 -2.1270 19 6 0.2081 -3.4512 -2.3289 20 6 -0.4391 -4.4426 -1.5858 21 6 -0.9005 -5.5796 -2.2109 22 6 -0.7140 -5.7484 -3.5783 23 7 -1.1796 -6.9074 -4.2083 24 6 -1.8256 -7.9403 -3.6078 25 6 -2.1037 -8.8591 -4.5612 26 6 -1.6157 -8.3769 -5.7809 27 7 -1.0684 -7.2068 -5.5724 28 6 -0.0652 -4.7661 -4.3221 29 9 0.1147 -4.9338 -5.6506 30 6 0.3949 -3.6226 -3.7033 31 1 -0.4850 0.8369 -0.0729 32 1 2.6561 -3.9596 -0.0495 33 1 0.9437 -4.3526 -0.3349 34 1 -0.7523 -3.7942 1.3663 35 1 -1.2001 -3.5981 3.7798 36 1 0.6548 -3.1898 5.3468 37 1 2.9582 -2.9832 4.5012 38 1 3.4066 -3.1847 2.0884 39 1 -0.5805 -4.3152 -0.5227 40 1 -1.4042 -6.3435 -1.6372 41 1 -2.0718 -8.0151 -2.5589 42 1 -2.6135 -9.7988 -4.4081 43 1 -1.6839 -8.8821 -6.7331 44 1 0.8986 -2.8608 -4.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069776295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 99.191918 kcal Electronic energy + Delta-G solvation = -32145.406565 eV Core-core repulsion = 27752.882919 eV Total energy + Delta-G solvation = -4392.523646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.63353 -41.48864 -39.75254 -38.59274 -37.46414 -34.55840 -33.60544 -32.16507 -30.91338 -30.50260 -30.40795 -30.16366 -29.04036 -25.97476 -25.06172 -23.49086 -23.16174 -22.08636 -21.27877 -20.78283 -20.62924 -19.82555 -18.35725 -17.61593 -16.71145 -16.16333 -15.97162 -15.81928 -15.54012 -15.17384 -15.03466 -14.78284 -14.66918 -14.52098 -14.13859 -13.86000 -13.80402 -13.62785 -13.29348 -12.98976 -12.88233 -12.67267 -12.45308 -12.28345 -12.16358 -11.99823 -11.57923 -11.27827 -11.21920 -10.89974 -10.81977 -10.78540 -10.50137 -10.45052 -10.21241 -10.17783 -9.25271 -8.95533 -8.82951 -8.46924 -8.39807 -8.09454 -7.93525 -7.28473 -6.23166 -3.90526 0.63313 1.19557 1.85473 1.92192 2.02904 2.24940 2.65049 3.28470 3.38703 3.40117 3.46267 4.02595 4.13440 4.20210 4.36528 4.42662 4.62678 4.69492 4.84797 5.07627 5.18773 5.21076 5.30297 5.35131 5.36884 5.37870 5.45531 5.52854 5.56740 5.63351 5.76177 5.77603 5.93128 5.95708 6.04175 6.07686 6.14264 6.27493 6.44964 6.48178 6.50429 6.55517 6.65801 6.93537 6.95103 7.07440 7.17652 7.49819 7.50076 7.52174 8.08520 8.84760 8.97908 9.48475 10.05570 10.82534 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003195 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.276093 B = 8761.297365 C =10732.872416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.080 3.920 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.342 4.342 8 H 0.085 0.915 9 N -0.426 5.426 10 C 0.112 3.888 11 C -0.058 4.058 12 C -0.097 4.097 13 C -0.124 4.124 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.094 4.094 17 C 0.488 3.512 18 O -0.520 6.520 19 C -0.059 4.059 20 C -0.097 4.097 21 C -0.115 4.115 22 C 0.110 3.890 23 N -0.318 5.318 24 C 0.051 3.949 25 C -0.264 4.264 26 C 0.045 3.955 27 N -0.276 5.276 28 C 0.102 3.898 29 F -0.119 7.119 30 C -0.102 4.102 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.179 0.821 42 H 0.153 0.847 43 H 0.188 0.812 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -16.108 0.978 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.146 5.146 10 C -0.011 4.011 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.112 4.112 17 C 0.276 3.724 18 O -0.398 6.398 19 C -0.064 4.064 20 C -0.116 4.116 21 C -0.136 4.136 22 C 0.016 3.984 23 N -0.093 5.093 24 C -0.091 4.091 25 C -0.292 4.292 26 C -0.142 4.142 27 N -0.095 5.095 28 C 0.081 3.919 29 F -0.097 7.097 30 C -0.123 4.123 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.196 0.804 42 H 0.171 0.829 43 H 0.204 0.796 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.003 -14.382 0.255 14.523 hybrid contribution -0.234 0.115 0.217 0.339 sum -2.237 -14.267 0.472 14.449 Atomic orbital electron populations 1.69950 1.06801 1.28090 1.38540 1.25038 0.94448 0.99252 0.94562 0.86390 0.80300 0.83340 0.77538 1.19458 1.20526 1.21316 1.18961 0.99154 0.86420 1.42286 0.89783 1.43254 1.46571 1.05456 1.19335 1.21100 1.01251 0.89271 0.89475 1.19881 0.93276 0.97447 0.95273 1.20856 0.95956 0.99681 0.95089 1.20966 0.98471 1.01156 0.93591 1.20964 0.93198 1.01642 0.98986 1.21002 0.96563 1.01359 0.95551 1.20940 0.98895 0.98542 0.92857 1.17557 0.85488 0.87033 0.82327 1.90693 1.57062 1.26993 1.65034 1.20552 0.96711 0.96002 0.93091 1.21371 0.97388 0.92184 1.00648 1.20570 1.02641 0.99783 0.90609 1.17564 1.02848 0.85929 0.92022 1.45879 1.43317 1.13910 1.06233 1.22771 0.97683 0.88427 1.00216 1.21559 1.12247 1.03114 0.92292 1.24108 0.97339 0.93033 0.99741 1.77721 1.23366 1.16888 0.91477 1.17086 1.01682 0.94761 0.78384 1.91564 1.93158 1.95410 1.29590 1.21078 1.00672 0.95949 0.94565 0.92459 0.92510 0.89375 0.87008 0.86892 0.87048 0.86873 0.86549 0.83379 0.84335 0.80419 0.82929 0.79556 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.65 11.67 55.50 0.65 -22.00 16 2 C 0.08 2.16 4.10 -17.45 -0.07 2.08 16 3 Si 0.90 21.24 29.63 -169.99 -5.04 16.20 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.34 -8.73 8.17 -15.00 -0.12 -8.85 16 8 H 0.08 2.09 7.96 -52.49 -0.42 1.67 16 9 N -0.43 -9.76 2.79 -117.27 -0.33 -10.09 16 10 C 0.11 2.01 5.53 -5.19 -0.03 1.98 16 11 C -0.06 -1.02 4.65 -104.63 -0.49 -1.51 16 12 C -0.10 -1.64 9.65 -39.59 -0.38 -2.02 16 13 C -0.12 -1.90 10.05 -39.59 -0.40 -2.29 16 14 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 15 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 16 C -0.09 -1.56 9.36 -39.58 -0.37 -1.93 16 17 C 0.49 11.63 6.72 -12.46 -0.08 11.54 16 18 O -0.52 -14.70 14.23 5.26 0.07 -14.62 16 19 C -0.06 -1.11 5.26 -104.96 -0.55 -1.67 16 20 C -0.10 -1.48 7.45 -39.20 -0.29 -1.77 16 21 C -0.12 -1.50 9.44 -39.48 -0.37 -1.87 16 22 C 0.11 1.67 6.70 -83.51 -0.56 1.11 16 23 N -0.32 -4.54 3.81 -10.49 -0.04 -4.58 16 24 C 0.05 0.55 10.82 -16.83 -0.18 0.36 16 25 C -0.26 -2.55 10.80 -39.99 -0.43 -2.98 16 26 C 0.05 0.50 12.02 -17.33 -0.21 0.30 16 27 N -0.28 -4.16 10.77 30.64 0.33 -3.83 16 28 C 0.10 1.73 7.28 -39.32 -0.29 1.45 16 29 F -0.12 -2.12 15.51 2.25 0.03 -2.08 16 30 C -0.10 -1.83 9.70 -39.13 -0.38 -2.21 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.09 1.39 3.23 -51.93 -0.17 1.22 16 34 H 0.11 1.78 6.49 -52.48 -0.34 1.44 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.15 2.16 4.83 -52.48 -0.25 1.91 16 40 H 0.14 1.27 6.73 -52.48 -0.35 0.91 16 41 H 0.18 1.24 7.04 -52.48 -0.37 0.87 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.19 1.40 8.06 -52.48 -0.42 0.97 16 44 H 0.15 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -34.00 376.55 -9.06 -43.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.42 Total: 5.14 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -6.00 Total: -12.87 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.61 Total: -40.50 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.07 Total: -14.62 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -9.06 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.253 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds