Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48495 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47049 * 300.00153 * 3 2 1 6 6 H 1.48502 * 109.46898 * 59.99940 * 3 2 1 7 7 C 1.39040 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00137 * 207.13269 * 7 2 1 9 9 N 1.36881 * 119.99614 * 27.13956 * 7 2 1 10 10 C 1.46501 * 119.99676 * 218.66117 * 9 7 2 11 11 C 1.50696 * 109.47069 * 48.20534 * 10 9 7 12 12 C 1.38233 * 120.00464 * 85.51458 * 11 10 9 13 13 C 1.38233 * 120.00215 * 179.97438 * 12 11 10 14 14 C 1.38232 * 120.00442 * 0.06756 * 13 12 11 15 15 C 1.38239 * 119.99576 * 359.90840 * 14 13 12 16 16 C 1.38234 * 119.99989 * 265.49102 * 11 10 9 17 17 C 1.34774 * 120.00275 * 38.66378 * 9 7 2 18 18 O 1.21618 * 120.00029 * 353.19298 * 17 9 7 19 19 C 1.47552 * 120.00107 * 173.19565 * 17 9 7 20 20 C 1.39782 * 120.07492 * 49.19810 * 19 17 9 21 21 C 1.37711 * 119.95784 * 179.74301 * 20 19 17 22 22 C 1.39032 * 120.11710 * 0.52952 * 21 20 19 23 23 N 1.39888 * 119.92572 * 179.74294 * 22 21 20 24 24 C 1.35824 * 126.10528 * 359.97438 * 23 22 21 25 25 C 1.35295 * 107.61956 * 180.02562 * 24 23 22 26 26 C 1.39943 * 107.96905 * 359.97438 * 25 24 23 27 27 N 1.30847 * 108.36425 * 359.71879 * 26 25 24 28 28 C 1.39252 * 120.14495 * 359.72630 * 22 21 20 29 29 F 1.35102 * 119.97983 * 179.97438 * 28 22 21 30 30 C 1.37921 * 120.03750 * 0.02562 * 28 22 21 31 31 H 0.97000 * 120.00007 * 4.98023 * 1 2 3 32 32 H 1.08995 * 109.47189 * 288.20012 * 10 9 7 33 33 H 1.09006 * 109.47120 * 168.19875 * 10 9 7 34 34 H 1.08007 * 119.99699 * 359.69743 * 12 11 10 35 35 H 1.08008 * 120.00211 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.00588 * 179.97438 * 14 13 12 37 37 H 1.08000 * 120.00022 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.00036 * 0.02562 * 16 11 10 39 39 H 1.08003 * 120.02006 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.94347 * 180.25332 * 21 20 19 41 41 H 1.08004 * 126.18843 * 359.97438 * 24 23 22 42 42 H 1.08002 * 126.01959 * 180.02562 * 25 24 23 43 43 H 1.08005 * 125.81904 * 180.02562 * 26 25 24 44 44 H 1.08007 * 120.05195 * 179.97438 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8890 2.3964 -1.2124 6 1 1.8890 2.3964 1.2125 7 6 2.0090 -1.2041 0.0005 8 1 2.9998 -1.2554 0.4271 9 7 1.4375 -2.3245 -0.5397 10 6 1.6294 -3.6270 0.1028 11 6 1.3549 -3.5040 1.5794 12 6 0.0619 -3.6201 2.0542 13 6 -0.1897 -3.5078 3.4088 14 6 0.8515 -3.2780 4.2886 15 6 2.1446 -3.1623 3.8139 16 6 2.3963 -3.2755 2.4593 17 6 0.6985 -2.2294 -1.6627 18 8 0.4357 -1.1364 -2.1270 19 6 0.2081 -3.4512 -2.3289 20 6 -0.4391 -4.4426 -1.5858 21 6 -0.9005 -5.5796 -2.2109 22 6 -0.7140 -5.7484 -3.5783 23 7 -1.1796 -6.9074 -4.2083 24 6 -1.8256 -7.9403 -3.6078 25 6 -2.1037 -8.8591 -4.5612 26 6 -1.6157 -8.3769 -5.7809 27 7 -1.0684 -7.2068 -5.5724 28 6 -0.0652 -4.7661 -4.3221 29 9 0.1147 -4.9338 -5.6506 30 6 0.3949 -3.6226 -3.7033 31 1 -0.4850 0.8369 -0.0729 32 1 2.6561 -3.9596 -0.0495 33 1 0.9437 -4.3526 -0.3349 34 1 -0.7523 -3.7942 1.3663 35 1 -1.2001 -3.5981 3.7798 36 1 0.6548 -3.1898 5.3468 37 1 2.9582 -2.9832 4.5012 38 1 3.4066 -3.1847 2.0884 39 1 -0.5805 -4.3152 -0.5227 40 1 -1.4042 -6.3435 -1.6372 41 1 -2.0718 -8.0151 -2.5589 42 1 -2.6135 -9.7988 -4.4081 43 1 -1.6839 -8.8821 -6.7331 44 1 0.8986 -2.8608 -4.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069776295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = 80.884171 kcal Electronic energy + Delta-G solvation = -32146.200449 eV Core-core repulsion = 27752.882919 eV Total energy + Delta-G solvation = -4393.317530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -49.96367 -42.41581 -41.21613 -39.81123 -38.98963 -36.28212 -34.85831 -33.89255 -32.11553 -31.93652 -31.57849 -31.13894 -30.27140 -27.56643 -26.54378 -24.86750 -24.35104 -23.28463 -22.46396 -21.93021 -21.75128 -21.27559 -19.48855 -19.07995 -18.21594 -17.44078 -17.37340 -17.04387 -16.98595 -16.66744 -16.36542 -16.00918 -15.99665 -15.86544 -15.49674 -15.20485 -15.00589 -14.88432 -14.62964 -14.18257 -14.12978 -13.82214 -13.74410 -13.58369 -13.52665 -13.34355 -13.17990 -12.81008 -12.74314 -12.61470 -12.50355 -12.09753 -11.82278 -11.70565 -11.61330 -11.38501 -10.86849 -10.25343 -10.16284 -10.02734 -9.60020 -9.45494 -9.22201 -9.04452 -8.21499 -5.89905 -0.55201 -0.06094 0.63154 0.71646 1.02358 1.28732 1.37144 1.44966 1.50971 1.87912 2.09605 2.35145 2.57300 2.79689 2.97901 3.12335 3.34815 3.36066 3.76450 3.86253 3.90091 3.95871 4.07698 4.13121 4.14905 4.29308 4.32427 4.40710 4.45503 4.55828 4.67956 4.72082 4.82349 4.82692 4.85603 4.90868 4.95391 5.07985 5.19423 5.28761 5.33692 5.37647 5.51265 5.70897 5.74128 5.77210 5.92516 6.08534 6.15273 6.32339 6.61872 6.96086 7.12787 7.61129 8.22881 8.83706 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003195 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.276093 B = 8761.297365 C =10732.872416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.038 3.962 3 Si 0.944 3.056 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.349 4.349 8 H 0.085 0.915 9 N -0.436 5.436 10 C 0.111 3.889 11 C -0.079 4.079 12 C -0.114 4.114 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.131 4.131 16 C -0.111 4.111 17 C 0.484 3.516 18 O -0.578 6.578 19 C -0.086 4.086 20 C -0.083 4.083 21 C -0.093 4.093 22 C 0.129 3.871 23 N -0.342 5.342 24 C 0.048 3.952 25 C -0.256 4.256 26 C 0.050 3.950 27 N -0.335 5.335 28 C 0.081 3.919 29 F -0.129 7.129 30 C -0.106 4.106 31 H 0.256 0.744 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.192 0.808 41 H 0.219 0.781 42 H 0.189 0.811 43 H 0.217 0.783 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -19.961 2.740 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.476 4.476 8 H 0.103 0.897 9 N -0.155 5.155 10 C -0.010 4.010 11 C -0.080 4.080 12 C -0.133 4.133 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.149 4.149 16 C -0.130 4.130 17 C 0.273 3.727 18 O -0.460 6.460 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.113 4.113 22 C 0.034 3.966 23 N -0.119 5.119 24 C -0.091 4.091 25 C -0.283 4.283 26 C -0.137 4.137 27 N -0.154 5.154 28 C 0.060 3.940 29 F -0.108 7.108 30 C -0.126 4.126 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.177 0.823 40 H 0.209 0.791 41 H 0.236 0.764 42 H 0.206 0.794 43 H 0.233 0.767 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.111 -18.297 2.042 18.672 hybrid contribution 0.054 0.991 -0.447 1.089 sum -3.056 -17.306 1.595 17.646 Atomic orbital electron populations 1.70032 1.07909 1.27773 1.41492 1.25680 0.94948 1.01738 0.94763 0.85670 0.80034 0.80567 0.76759 1.18103 1.22507 1.20489 1.19098 0.99163 0.87509 1.41793 0.89695 1.43404 1.45883 1.06616 1.19556 1.21267 1.02424 0.87264 0.90065 1.19908 0.94135 0.99068 0.94849 1.21048 0.95752 1.00317 0.96172 1.21313 0.99991 1.00446 0.93105 1.21375 0.92735 1.00172 1.00528 1.21347 0.97814 1.00476 0.95266 1.21132 0.98917 0.99094 0.93822 1.18238 0.84472 0.87857 0.82146 1.90640 1.59126 1.29706 1.66553 1.20102 0.99957 0.95625 0.93403 1.21421 0.96167 0.91781 1.00863 1.20951 1.01024 0.99584 0.89746 1.17762 1.00535 0.85675 0.92609 1.45973 1.45009 1.14408 1.06490 1.23611 0.96142 0.87105 1.02275 1.22073 1.11125 1.04019 0.91128 1.24817 0.95260 0.91863 1.01748 1.77716 1.25957 1.19196 0.92524 1.17144 1.03251 0.95372 0.78259 1.91529 1.93437 1.95479 1.30314 1.20897 1.01108 0.96306 0.94310 0.93446 0.91615 0.87169 0.86659 0.84601 0.84047 0.84393 0.86383 0.82335 0.79117 0.76444 0.79361 0.76670 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.46 11.67 21.68 0.25 -49.21 16 2 C 0.04 2.10 4.10 84.95 0.35 2.45 16 3 Si 0.94 45.16 29.63 68.60 2.03 47.19 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.35 -18.34 8.17 84.10 0.69 -17.66 16 8 H 0.09 4.32 7.96 -2.91 -0.02 4.30 16 9 N -0.44 -20.56 2.79 -643.20 -1.79 -22.36 16 10 C 0.11 4.00 5.53 85.63 0.47 4.47 16 11 C -0.08 -2.74 4.65 -19.87 -0.09 -2.83 16 12 C -0.11 -3.73 9.65 22.27 0.21 -3.51 16 13 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 14 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 15 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 16 C -0.11 -3.61 9.36 22.27 0.21 -3.40 16 17 C 0.48 24.12 6.72 86.70 0.58 24.70 16 18 O -0.58 -34.77 14.23 -4.09 -0.06 -34.83 16 19 C -0.09 -3.36 5.26 -20.08 -0.11 -3.46 16 20 C -0.08 -2.43 7.45 22.52 0.17 -2.26 16 21 C -0.09 -2.09 9.44 22.34 0.21 -1.88 16 22 C 0.13 3.65 6.70 38.29 0.26 3.91 16 23 N -0.34 -8.85 3.81 -187.11 -0.71 -9.56 16 24 C 0.05 0.80 10.82 83.40 0.90 1.70 16 25 C -0.26 -3.73 10.80 22.00 0.24 -3.49 16 26 C 0.05 0.97 12.02 85.25 1.02 1.99 16 27 N -0.34 -9.57 10.77 -56.97 -0.61 -10.18 16 28 C 0.08 2.79 7.28 22.44 0.16 2.96 16 29 F -0.13 -4.76 15.51 44.97 0.70 -4.06 16 30 C -0.11 -3.98 9.70 22.56 0.22 -3.77 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 33 H 0.11 3.36 3.23 -2.38 -0.01 3.36 16 34 H 0.12 3.53 6.49 -2.91 -0.02 3.52 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.16 4.33 4.83 -2.91 -0.01 4.31 16 40 H 0.19 2.28 6.73 -2.91 -0.02 2.26 16 41 H 0.22 1.57 7.04 -2.91 -0.02 1.55 16 42 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.13 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -80.39 376.55 7.04 -73.35 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.06 Total: 19.92 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 6.17 Total: -10.25 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.86 Total: -91.31 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.06 Total: -34.83 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.70 Total: -4.06 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -80.39 7.04 -73.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.232 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds