Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99491 * 2 1 4 4 H 1.48504 * 109.47008 * 239.99732 * 3 2 1 5 5 H 1.48499 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47254 * 119.99993 * 3 2 1 7 7 C 1.37875 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47175 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.35985 * 117.00127 * 180.02562 * 11 10 9 13 13 C 1.38793 * 120.49800 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.44899 * 179.97438 * 13 12 11 15 15 C 1.38081 * 119.35675 * 359.97438 * 14 13 12 16 16 N 1.31960 * 120.94943 * 359.97438 * 15 14 13 17 17 C 1.32272 * 121.69603 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72873 * 180.02562 * 17 16 15 19 19 C 1.34783 * 120.00065 * 359.97438 * 18 17 16 20 20 O 1.21283 * 119.99880 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.47196 * 180.02562 * 21 19 18 23 23 C 1.34240 * 126.49556 * 264.69129 * 22 21 19 24 24 N 1.36836 * 109.92274 * 179.83575 * 23 22 21 25 25 H 0.97004 * 125.05780 * 180.18504 * 24 23 22 26 26 C 1.37686 * 109.87757 * 0.43644 * 24 23 22 27 27 C 1.39126 * 133.50821 * 179.71518 * 26 24 23 28 28 C 1.37752 * 119.77429 * 180.02562 * 27 26 24 29 29 C 1.38831 * 120.66931 * 359.97438 * 28 27 26 30 30 C 1.36621 * 120.52819 * 0.02562 * 29 28 27 31 31 C 1.39636 * 119.76446 * 0.02562 * 30 29 28 32 32 H 0.96995 * 120.00545 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.47079 * 59.99501 * 9 7 2 34 34 H 1.09001 * 109.46724 * 299.99835 * 9 7 2 35 35 H 1.09004 * 109.47159 * 59.99997 * 10 9 7 36 36 H 1.09001 * 109.47525 * 299.99793 * 10 9 7 37 37 H 1.08002 * 120.77284 * 0.24595 * 13 12 11 38 38 H 1.08001 * 120.31757 * 180.02562 * 14 13 12 39 39 H 1.07996 * 119.53007 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00328 * 179.97438 * 18 17 16 41 41 H 1.09005 * 109.47030 * 300.00534 * 21 19 18 42 42 H 1.08999 * 109.47075 * 59.99585 * 21 19 18 43 43 H 1.07999 * 125.03891 * 359.97204 * 23 22 21 44 44 H 1.07990 * 120.11286 * 0.05163 * 27 26 24 45 45 H 1.08001 * 119.66492 * 180.02562 * 28 27 26 46 46 H 1.08001 * 119.73305 * 180.02562 * 29 28 27 47 47 H 1.07997 * 120.11989 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 8 1.5311 -4.8995 0.0011 12 6 2.2718 -6.0399 0.0018 13 6 3.6584 -5.9793 0.0023 14 6 4.3722 -7.1694 0.0035 15 6 3.6883 -8.3689 0.0046 16 7 2.3690 -8.3980 0.0050 17 6 1.6494 -7.2881 0.0040 18 7 0.2559 -7.3667 0.0051 19 6 -0.3512 -8.5700 0.0067 20 8 0.3134 -9.5845 0.0067 21 6 -1.8559 -8.6549 0.0084 22 6 -2.2774 -10.1017 0.0106 23 6 -2.5978 -10.8416 -1.0626 24 7 -2.9260 -12.1114 -0.6725 25 1 -3.1898 -12.8276 -1.2712 26 6 -2.8316 -12.2195 0.6969 27 6 -3.0532 -13.2604 1.5931 28 6 -2.8689 -13.0523 2.9422 29 6 -2.4632 -11.8130 3.4187 30 6 -2.2400 -10.7771 2.5564 31 6 -2.4217 -10.9655 1.1848 32 1 -0.4851 0.8400 0.0004 33 1 0.6248 -2.5571 -0.8897 34 1 0.6242 -2.5567 0.8903 35 1 2.8721 -3.6042 0.8905 36 1 2.8721 -3.6043 -0.8895 37 1 4.1699 -5.0281 0.0063 38 1 5.4521 -7.1574 0.0044 39 1 4.2409 -9.2968 0.0051 40 1 -0.2757 -6.5553 0.0047 41 1 -2.2466 -8.1615 0.8984 42 1 -2.2485 -8.1629 -0.8815 43 1 -2.5946 -10.4878 -2.0830 44 1 -3.3681 -14.2282 1.2322 45 1 -3.0410 -13.8617 3.6363 46 1 -2.3229 -11.6668 4.4796 47 1 -1.9249 -9.8157 2.9343 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069811877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = 27.295417 kcal Electronic energy + Delta-G solvation = -30816.080480 eV Core-core repulsion = 26543.899472 eV Total energy + Delta-G solvation = -4272.181007 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -41.45717 -40.75414 -39.06664 -37.72598 -37.02529 -34.71138 -33.46519 -33.23405 -31.61333 -30.77117 -30.25150 -29.43511 -29.04017 -27.19292 -25.39814 -23.63036 -22.98729 -22.76205 -21.90884 -21.23122 -20.44617 -19.46031 -18.34511 -17.89915 -17.36812 -17.09553 -16.57501 -16.14846 -15.78722 -15.69341 -15.60581 -15.09293 -14.82948 -14.59359 -14.54387 -14.21398 -13.95608 -13.93877 -13.62881 -13.60907 -12.97739 -12.84289 -12.70717 -12.39416 -12.18423 -11.99003 -11.89770 -11.80042 -11.53791 -11.06827 -10.97326 -10.95759 -10.68456 -10.61336 -10.17759 -10.03123 -9.78511 -9.71420 -9.41472 -9.17033 -8.94842 -8.51515 -8.33319 -7.79610 -7.61080 -6.17365 -4.22350 1.00584 1.26061 1.48760 1.52014 2.41537 2.83892 2.94413 3.12648 3.24149 3.28918 3.29960 3.55897 3.81900 4.05780 4.34276 4.54957 4.56178 4.62134 4.74970 4.92104 4.95366 4.98448 5.07399 5.09947 5.18653 5.19352 5.37112 5.37835 5.41340 5.50086 5.54169 5.69154 5.75378 5.88223 5.91336 5.98320 6.09875 6.22297 6.33942 6.41017 6.49048 6.55073 6.55802 6.62867 6.68773 7.02714 7.34177 7.36225 7.37005 7.53512 7.65743 7.86941 8.14534 8.16084 8.45779 8.82620 9.42483 10.93955 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.001880 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.249602 B =14887.782900 C =16087.791156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.065 3.935 13 C -0.149 4.149 14 C -0.162 4.162 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.331 3.669 18 N -0.655 5.655 19 C 0.501 3.499 20 O -0.469 6.469 21 C -0.064 4.064 22 C -0.151 4.151 23 C 0.065 3.935 24 N -0.595 5.595 25 H 0.415 0.585 26 C 0.095 3.905 27 C -0.132 4.132 28 C -0.102 4.102 29 C -0.148 4.148 30 C -0.066 4.066 31 C -0.088 4.088 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.423 0.577 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.169 0.831 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -24.053 0.373 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.014 3.986 13 C -0.175 4.175 14 C -0.183 4.183 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.098 3.902 18 N -0.304 5.304 19 C 0.287 3.713 20 O -0.337 6.337 21 C -0.105 4.105 22 C -0.159 4.159 23 C -0.061 4.061 24 N -0.197 5.197 25 H 0.251 0.749 26 C -0.012 4.012 27 C -0.153 4.153 28 C -0.121 4.121 29 C -0.167 4.167 30 C -0.085 4.085 31 C -0.093 4.093 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.187 0.813 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.118 -25.551 0.266 26.060 hybrid contribution 0.904 2.010 -0.345 2.230 sum -4.215 -23.541 -0.079 23.916 Atomic orbital electron populations 1.69946 1.06081 1.27188 1.49436 1.24976 0.94920 0.99385 0.94808 0.86548 0.79520 0.82567 0.78748 1.20088 1.21087 1.20070 1.20911 0.93027 0.90160 1.52610 0.92405 1.19119 0.94122 0.88886 0.98885 1.23382 0.97242 0.80360 0.99791 1.86096 1.36207 1.12875 1.87634 1.19611 0.91123 0.87152 1.00725 1.21598 0.92302 1.00292 1.03326 1.21873 1.01129 0.92564 1.02776 1.22399 0.88898 0.97812 0.99094 1.67641 1.07781 1.26939 1.13529 1.17846 0.85070 0.86828 1.00461 1.43575 1.03608 1.10594 1.72612 1.20901 0.90463 0.82947 0.77038 1.90799 1.65809 1.33881 1.43256 1.19940 0.91459 0.93818 1.05284 1.19490 1.10064 0.94770 0.91546 1.21545 1.01904 0.83687 0.98973 1.41655 1.60815 1.11741 1.05521 0.74857 1.18223 1.03393 0.96141 0.83408 1.19981 1.06096 0.96878 0.92357 1.20771 0.99803 0.97322 0.94189 1.20613 1.03261 0.93304 0.99554 1.20281 0.97945 0.99137 0.91097 1.18980 1.04162 0.92920 0.93204 0.92585 0.95353 0.95325 0.92997 0.92995 0.83827 0.84901 0.82779 0.73894 0.87842 0.87817 0.81337 0.86501 0.85966 0.86155 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.30 4.70 37.15 0.17 1.48 16 11 O -0.32 -5.77 9.39 -19.69 -0.18 -5.96 16 12 C 0.07 1.09 6.72 -38.92 -0.26 0.83 16 13 C -0.15 -2.19 9.14 -39.18 -0.36 -2.55 16 14 C -0.16 -2.07 10.10 -39.44 -0.40 -2.47 16 15 C 0.07 1.04 11.17 -17.55 -0.20 0.85 16 16 N -0.44 -7.57 7.88 -12.23 -0.10 -7.66 16 17 C 0.33 5.52 7.45 -154.44 -1.15 4.37 16 18 N -0.66 -9.45 5.39 -11.29 -0.06 -9.51 16 19 C 0.50 7.10 7.79 -10.98 -0.09 7.02 16 20 O -0.47 -8.41 14.29 5.55 0.08 -8.33 16 21 C -0.06 -0.66 6.23 -29.03 -0.18 -0.84 16 22 C -0.15 -1.73 4.81 -102.71 -0.49 -2.23 16 23 C 0.07 0.62 11.73 -16.73 -0.20 0.42 16 24 N -0.59 -5.26 6.07 -10.65 -0.06 -5.33 16 25 H 0.41 2.28 8.96 -40.82 -0.37 1.92 16 26 C 0.10 1.06 7.28 -83.99 -0.61 0.45 16 27 C -0.13 -1.28 10.08 -39.43 -0.40 -1.68 16 28 C -0.10 -0.95 10.01 -39.54 -0.40 -1.35 16 29 C -0.15 -1.53 9.97 -39.95 -0.40 -1.93 16 30 C -0.07 -0.79 10.05 -39.64 -0.40 -1.18 16 31 C -0.09 -1.10 6.35 -105.14 -0.67 -1.77 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.97 7.69 -51.93 -0.40 0.58 16 36 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.42 5.32 8.05 -40.82 -0.33 4.99 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -35.13 404.52 -11.12 -46.25 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.02 Total: 6.41 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -6.58 Total: -12.87 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.51 Total: -47.18 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.11 Total: -14.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.13 -11.12 -46.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069811877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.543 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds