Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48492 * 109.47204 * 270.00442 * 3 2 1 5 5 H 1.48499 * 109.46881 * 30.00197 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00009 * 3 2 1 7 7 C 1.37879 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99562 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46719 * 185.05115 * 9 7 2 11 11 C 1.46898 * 110.99690 * 195.64024 * 10 9 7 12 12 N 1.46500 * 109.47091 * 151.96126 * 11 10 9 13 13 N 1.40270 * 126.56352 * 77.28607 * 12 11 10 14 14 C 1.30431 * 107.71585 * 179.97438 * 13 12 11 15 15 C 1.47189 * 125.49238 * 179.97438 * 14 13 12 16 16 C 1.35070 * 125.28671 * 180.02562 * 15 14 13 17 17 C 1.37807 * 114.68108 * 179.97438 * 16 15 14 18 18 C 1.33712 * 115.09183 * 359.97438 * 17 16 15 19 19 S 1.75856 * 109.78189 * 359.76131 * 18 17 16 20 20 O 1.35136 * 109.01954 * 0.02562 * 14 13 12 21 21 C 1.34352 * 108.86335 * 359.77031 * 20 14 13 22 22 O 1.21692 * 126.23690 * 180.25989 * 21 20 14 23 23 C 1.46893 * 111.00125 * 71.68511 * 10 9 7 24 24 C 1.53182 * 109.54241 * 215.15955 * 23 10 9 25 25 C 1.53094 * 109.16298 * 183.14989 * 24 23 10 26 26 O 1.42911 * 109.41199 * 57.60840 * 25 24 23 27 27 C 1.42893 * 114.09927 * 298.84090 * 26 25 24 28 28 C 1.53093 * 109.41644 * 61.15754 * 27 26 25 29 29 H 0.97001 * 119.99897 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47209 * 65.05215 * 9 7 2 31 31 H 1.08999 * 109.47335 * 305.04569 * 9 7 2 32 32 H 1.09005 * 109.47258 * 271.95805 * 11 10 9 33 33 H 1.08998 * 109.47421 * 31.96038 * 11 10 9 34 34 H 1.08001 * 122.66236 * 359.97438 * 16 15 14 35 35 H 1.07996 * 122.45883 * 179.97438 * 17 16 15 36 36 H 1.07994 * 125.11120 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.61796 * 335.38162 * 23 10 9 38 38 H 1.09003 * 109.52195 * 63.24794 * 24 23 10 39 39 H 1.08994 * 109.52452 * 303.05628 * 24 23 10 40 40 H 1.09000 * 109.48293 * 177.59213 * 25 24 23 41 41 H 1.08999 * 109.48188 * 297.61915 * 25 24 23 42 42 H 1.09000 * 109.48458 * 181.14089 * 27 26 25 43 43 H 1.08998 * 109.48385 * 301.17446 * 27 26 25 44 44 H 1.09004 * 109.52032 * 62.29954 * 28 27 26 45 45 H 1.08996 * 109.52310 * 182.42288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5737 -0.1236 11 6 5.4218 -2.6622 0.2392 12 7 5.7119 -4.0031 0.7531 13 7 5.8793 -5.1707 -0.0059 14 6 6.1236 -6.1497 0.8206 15 6 6.3615 -7.5512 0.4388 16 6 6.6137 -8.5620 1.2984 17 6 6.8031 -9.7902 0.7027 18 6 6.7082 -9.7943 -0.6310 19 16 6.3530 -8.1712 -1.2073 20 8 6.1220 -5.6703 2.0840 21 6 5.8740 -4.3504 2.0474 22 8 5.8063 -3.6043 3.0064 23 6 3.7697 -3.0962 -1.4768 24 6 3.4377 -4.5897 -1.3995 25 6 3.2758 -5.1425 -2.8179 26 8 4.4750 -4.9078 -3.5590 27 6 4.8100 -3.5263 -3.7044 28 6 5.0335 -2.9085 -2.3216 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.7608 0.9306 31 1 3.8745 -0.6038 -0.8425 32 1 6.0344 -2.4703 -0.6417 33 1 5.6476 -1.9221 1.0070 34 1 6.6631 -8.4192 2.3678 35 1 7.0129 -10.6840 1.2715 36 1 6.8279 -10.6642 -1.2596 37 1 2.9396 -2.5616 -1.9386 38 1 2.5087 -4.7281 -0.8464 39 1 4.2462 -5.1169 -0.8932 40 1 3.0816 -6.2140 -2.7705 41 1 2.4409 -4.6432 -3.3096 42 1 5.7211 -3.4334 -4.2956 43 1 3.9953 -3.0057 -4.2078 44 1 5.8743 -3.4017 -1.8339 45 1 5.2469 -1.8449 -2.4281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069921409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = 28.455421 kcal Electronic energy + Delta-G solvation = -32021.063643 eV Core-core repulsion = 27748.543794 eV Total energy + Delta-G solvation = -4272.519849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.26610 -39.56622 -38.31163 -37.66121 -37.08562 -35.46637 -32.81170 -32.49280 -31.35170 -30.83849 -29.73351 -27.79110 -25.87733 -24.83701 -23.84689 -23.42988 -22.99593 -22.11624 -20.98622 -19.80762 -19.23964 -18.50856 -17.62205 -17.24949 -16.85435 -16.34408 -16.22787 -15.84393 -15.69344 -15.50406 -14.91667 -14.54060 -14.42495 -14.22771 -14.06214 -13.86379 -13.65278 -13.15114 -13.07541 -12.84009 -12.69203 -12.51596 -12.47211 -12.14208 -11.95768 -11.73511 -11.65432 -11.13021 -10.98461 -10.90809 -10.77210 -10.68809 -10.62711 -10.39801 -10.05545 -9.78023 -9.62041 -9.49805 -9.22792 -8.84918 -8.67772 -8.48814 -7.70226 -6.14304 -4.13093 0.08140 0.92666 1.57724 1.66641 1.82279 2.37351 2.51937 2.59417 3.20281 3.29720 3.30023 4.03823 4.10466 4.32551 4.44243 4.63172 4.72254 4.99557 5.02776 5.10280 5.16639 5.17308 5.21896 5.27066 5.34805 5.46664 5.57132 5.60102 5.65880 5.75712 5.78960 5.82458 5.87467 5.96458 6.01652 6.08119 6.22201 6.30795 6.46288 6.56369 6.74903 6.86535 7.40686 7.41966 7.43288 7.62851 7.71798 7.74867 8.51470 8.95305 9.45684 10.98574 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.003384 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.467542 B = 8273.040524 C = 9563.618508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.170 3.830 10 N -0.533 5.533 11 C 0.294 3.706 12 N -0.431 5.431 13 N -0.233 5.233 14 C 0.294 3.706 15 C -0.149 4.149 16 C -0.081 4.081 17 C -0.141 4.141 18 C -0.210 4.210 19 S 0.223 5.777 20 O -0.268 6.268 21 C 0.611 3.389 22 O -0.480 6.480 23 C 0.094 3.906 24 C -0.157 4.157 25 C 0.066 3.934 26 O -0.382 6.382 27 C 0.071 3.929 28 C -0.192 4.192 29 H 0.265 0.735 30 H 0.032 0.968 31 H -0.006 1.006 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.847 -18.256 -5.575 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.099 0.901 9 C 0.044 3.956 10 N -0.256 5.256 11 C 0.085 3.915 12 N -0.264 5.264 13 N -0.064 5.064 14 C 0.070 3.930 15 C -0.268 4.268 16 C -0.117 4.117 17 C -0.172 4.172 18 C -0.347 4.347 19 S 0.489 5.511 20 O -0.166 6.166 21 C 0.362 3.638 22 O -0.360 6.360 23 C -0.015 4.015 24 C -0.195 4.195 25 C -0.011 4.011 26 O -0.301 6.301 27 C -0.006 4.006 28 C -0.231 4.231 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.190 0.810 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.125 -17.136 -6.882 23.870 hybrid contribution 0.674 0.978 1.894 2.236 sum 15.800 -16.157 -4.988 23.142 Atomic orbital electron populations 1.69878 1.06124 1.26982 1.50353 1.24877 0.94744 0.98768 0.94695 0.86895 0.80438 0.84136 0.78479 1.20227 1.20992 1.19168 1.20920 0.88180 0.94864 1.50977 0.90059 1.20245 0.97714 0.81921 0.95699 1.61589 1.13164 1.25335 1.25546 1.22452 0.92448 0.76388 1.00240 1.50488 1.64593 1.07741 1.03612 1.77389 1.18446 0.91577 1.18981 1.22286 0.99038 0.93379 0.78264 1.21236 1.16283 0.89826 0.99464 1.20475 0.98866 0.90927 1.01437 1.20019 1.04587 0.98561 0.93986 1.26193 1.07488 1.01706 0.99347 1.84830 1.65998 0.98660 1.01643 1.85152 1.77133 1.24959 1.29312 1.19285 0.79441 0.79613 0.85428 1.91212 1.56468 1.50035 1.38281 1.21682 0.96831 0.95623 0.87335 1.22558 1.03642 0.96310 0.97034 1.22547 0.86648 1.00520 0.91422 1.87857 1.43529 1.24360 1.74342 1.22398 1.00140 0.82516 0.95553 1.22972 1.01041 1.01125 0.97921 0.92503 0.95034 0.98801 0.89242 0.87202 0.83119 0.83391 0.80958 0.88672 0.91073 0.89039 0.89458 0.93455 0.89517 0.93332 0.89857 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.80 27.37 -169.99 -4.65 16.14 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.09 6.69 56.52 0.38 -5.71 16 7 C -0.51 -14.03 8.90 -34.44 -0.31 -14.33 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.17 3.88 3.68 -4.97 -0.02 3.86 16 10 N -0.53 -10.66 4.40 -231.74 -1.02 -11.68 16 11 C 0.29 5.00 5.74 -63.32 -0.36 4.64 16 12 N -0.43 -7.30 3.67 -68.29 -0.25 -7.55 16 13 N -0.23 -3.51 8.41 31.85 0.27 -3.25 16 14 C 0.29 4.08 8.11 -14.51 -0.12 3.97 16 15 C -0.15 -1.61 6.43 -37.07 -0.24 -1.85 16 16 C -0.08 -0.70 10.08 -40.87 -0.41 -1.12 16 17 C -0.14 -0.93 10.16 -41.33 -0.42 -1.35 16 18 C -0.21 -1.32 11.23 29.15 0.33 -0.99 16 19 S 0.22 1.98 23.30 -107.50 -2.50 -0.53 16 20 O -0.27 -4.23 10.70 -20.97 -0.22 -4.46 16 21 C 0.61 11.12 9.24 54.15 0.50 11.62 16 22 O -0.48 -10.08 17.76 -19.00 -0.34 -10.41 16 23 C 0.09 1.68 2.10 -67.53 -0.14 1.54 16 24 C -0.16 -2.63 5.66 -26.59 -0.15 -2.78 16 25 C 0.07 0.94 6.84 37.21 0.25 1.20 16 26 O -0.38 -5.52 10.77 -35.23 -0.38 -5.90 16 27 C 0.07 0.95 6.84 37.21 0.25 1.20 16 28 C -0.19 -2.82 4.13 -26.59 -0.11 -2.93 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.74 7.04 -51.93 -0.37 0.38 16 31 H -0.01 -0.13 7.21 -51.93 -0.37 -0.50 16 32 H 0.09 1.32 4.72 -51.93 -0.24 1.08 16 33 H 0.11 1.88 7.27 -51.93 -0.38 1.50 16 34 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.10 1.96 7.05 -51.93 -0.37 1.59 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 1.52 4.06 -51.93 -0.21 1.31 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.22 5.25 -51.93 -0.27 0.95 16 45 H 0.07 0.97 8.05 -51.93 -0.42 0.56 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -32.55 377.74 -9.27 -41.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.59 Total: 1.61 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.04 Total: 4.59 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.23 Total: -48.54 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.94 Total: -20.77 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.65 Total: 16.14 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.50 Total: -0.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.55 -9.27 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.275 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds