Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48492 * 109.47204 * 270.00442 * 3 2 1 5 5 H 1.48499 * 109.46881 * 30.00197 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00009 * 3 2 1 7 7 C 1.37879 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99562 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46719 * 185.05115 * 9 7 2 11 11 C 1.46898 * 110.99690 * 195.64024 * 10 9 7 12 12 N 1.46500 * 109.47091 * 151.96126 * 11 10 9 13 13 N 1.40270 * 126.56352 * 77.28607 * 12 11 10 14 14 C 1.30431 * 107.71585 * 179.97438 * 13 12 11 15 15 C 1.47189 * 125.49238 * 179.97438 * 14 13 12 16 16 C 1.35070 * 125.28671 * 180.02562 * 15 14 13 17 17 C 1.37807 * 114.68108 * 179.97438 * 16 15 14 18 18 C 1.33712 * 115.09183 * 359.97438 * 17 16 15 19 19 S 1.75856 * 109.78189 * 359.76131 * 18 17 16 20 20 O 1.35136 * 109.01954 * 0.02562 * 14 13 12 21 21 C 1.34352 * 108.86335 * 359.77031 * 20 14 13 22 22 O 1.21692 * 126.23690 * 180.25989 * 21 20 14 23 23 C 1.46893 * 111.00125 * 71.68511 * 10 9 7 24 24 C 1.53182 * 109.54241 * 215.15955 * 23 10 9 25 25 C 1.53094 * 109.16298 * 183.14989 * 24 23 10 26 26 O 1.42911 * 109.41199 * 57.60840 * 25 24 23 27 27 C 1.42893 * 114.09927 * 298.84090 * 26 25 24 28 28 C 1.53093 * 109.41644 * 61.15754 * 27 26 25 29 29 H 0.97001 * 119.99897 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47209 * 65.05215 * 9 7 2 31 31 H 1.08999 * 109.47335 * 305.04569 * 9 7 2 32 32 H 1.09005 * 109.47258 * 271.95805 * 11 10 9 33 33 H 1.08998 * 109.47421 * 31.96038 * 11 10 9 34 34 H 1.08001 * 122.66236 * 359.97438 * 16 15 14 35 35 H 1.07996 * 122.45883 * 179.97438 * 17 16 15 36 36 H 1.07994 * 125.11120 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.61796 * 335.38162 * 23 10 9 38 38 H 1.09003 * 109.52195 * 63.24794 * 24 23 10 39 39 H 1.08994 * 109.52452 * 303.05628 * 24 23 10 40 40 H 1.09000 * 109.48293 * 177.59213 * 25 24 23 41 41 H 1.08999 * 109.48188 * 297.61915 * 25 24 23 42 42 H 1.09000 * 109.48458 * 181.14089 * 27 26 25 43 43 H 1.08998 * 109.48385 * 301.17446 * 27 26 25 44 44 H 1.09004 * 109.52032 * 62.29954 * 28 27 26 45 45 H 1.08996 * 109.52310 * 182.42288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5737 -0.1236 11 6 5.4218 -2.6622 0.2392 12 7 5.7119 -4.0031 0.7531 13 7 5.8793 -5.1707 -0.0059 14 6 6.1236 -6.1497 0.8206 15 6 6.3615 -7.5512 0.4388 16 6 6.6137 -8.5620 1.2984 17 6 6.8031 -9.7902 0.7027 18 6 6.7082 -9.7943 -0.6310 19 16 6.3530 -8.1712 -1.2073 20 8 6.1220 -5.6703 2.0840 21 6 5.8740 -4.3504 2.0474 22 8 5.8063 -3.6043 3.0064 23 6 3.7697 -3.0962 -1.4768 24 6 3.4377 -4.5897 -1.3995 25 6 3.2758 -5.1425 -2.8179 26 8 4.4750 -4.9078 -3.5590 27 6 4.8100 -3.5263 -3.7044 28 6 5.0335 -2.9085 -2.3216 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.7608 0.9306 31 1 3.8745 -0.6038 -0.8425 32 1 6.0344 -2.4703 -0.6417 33 1 5.6476 -1.9221 1.0070 34 1 6.6631 -8.4192 2.3678 35 1 7.0129 -10.6840 1.2715 36 1 6.8279 -10.6642 -1.2596 37 1 2.9396 -2.5616 -1.9386 38 1 2.5087 -4.7281 -0.8464 39 1 4.2462 -5.1169 -0.8932 40 1 3.0816 -6.2140 -2.7705 41 1 2.4409 -4.6432 -3.3096 42 1 5.7211 -3.4334 -4.2956 43 1 3.9953 -3.0057 -4.2078 44 1 5.8743 -3.4017 -1.8339 45 1 5.2469 -1.8449 -2.4281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069921409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = 4.899571 kcal Electronic energy + Delta-G solvation = -32022.085102 eV Core-core repulsion = 27748.543794 eV Total energy + Delta-G solvation = -4273.541307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.53923 -40.88721 -39.42874 -38.61665 -38.43056 -36.82028 -34.83045 -33.65423 -32.76913 -32.05448 -30.85464 -29.35156 -27.22765 -25.72039 -25.34015 -24.62851 -24.21324 -23.33549 -22.61349 -20.88893 -20.33028 -19.35629 -18.99809 -18.90676 -18.36360 -17.66146 -17.49317 -17.11244 -16.85846 -16.53399 -16.38808 -16.00315 -15.85303 -15.58093 -15.09552 -14.97103 -14.91666 -14.66462 -14.31711 -13.93753 -13.81661 -13.65411 -13.51805 -13.31585 -13.27896 -13.14381 -13.02863 -12.70550 -12.61835 -12.25678 -12.05375 -12.01103 -11.83882 -11.75974 -11.70330 -11.58910 -10.99363 -10.84218 -10.76598 -10.44949 -9.52961 -9.47310 -9.21473 -8.31976 -6.36527 -0.70280 0.09085 0.57974 0.79075 0.97911 0.98803 1.31998 1.35778 1.45367 1.51967 1.83012 2.30917 2.80254 2.95067 3.01707 3.05980 3.52995 3.76278 3.88166 3.98319 4.04220 4.12091 4.12953 4.23034 4.27665 4.39024 4.40605 4.50085 4.56967 4.61485 4.63941 4.72425 4.77851 4.82706 4.84772 4.96292 5.06940 5.08802 5.21948 5.24579 5.40568 5.43884 5.47275 5.86981 6.10844 6.16388 6.28101 6.32935 6.49441 6.69329 7.26538 8.84827 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.003384 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.467542 B = 8273.040524 C = 9563.618508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.515 4.515 8 H 0.030 0.970 9 C 0.182 3.818 10 N -0.556 5.556 11 C 0.295 3.705 12 N -0.433 5.433 13 N -0.250 5.250 14 C 0.310 3.690 15 C -0.194 4.194 16 C -0.063 4.063 17 C -0.149 4.149 18 C -0.178 4.178 19 S 0.205 5.795 20 O -0.268 6.268 21 C 0.606 3.394 22 O -0.518 6.518 23 C 0.095 3.905 24 C -0.154 4.154 25 C 0.073 3.927 26 O -0.382 6.382 27 C 0.070 3.930 28 C -0.183 4.183 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.118 0.882 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.905 -20.029 -7.046 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.553 4.553 8 H 0.049 0.951 9 C 0.055 3.945 10 N -0.281 5.281 11 C 0.087 3.913 12 N -0.265 5.265 13 N -0.080 5.080 14 C 0.088 3.912 15 C -0.313 4.313 16 C -0.100 4.100 17 C -0.178 4.178 18 C -0.315 4.315 19 S 0.471 5.529 20 O -0.164 6.164 21 C 0.357 3.643 22 O -0.401 6.401 23 C -0.013 4.013 24 C -0.193 4.193 25 C -0.004 4.004 26 O -0.301 6.301 27 C -0.007 4.007 28 C -0.221 4.221 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.174 0.826 35 H 0.198 0.802 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.136 0.864 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.211 -18.951 -8.392 27.591 hybrid contribution -0.290 1.177 2.362 2.655 sum 17.922 -17.775 -6.030 25.952 Atomic orbital electron populations 1.70048 1.08259 1.28195 1.52161 1.25837 0.95585 1.03122 0.94164 0.85730 0.79488 0.78394 0.79462 1.18445 1.21101 1.17093 1.21106 0.90781 0.93028 1.50434 0.95142 1.19940 0.94520 0.84011 0.95988 1.61413 1.15506 1.23848 1.27290 1.22509 0.90960 0.76662 1.01171 1.50394 1.64271 1.08432 1.03356 1.77404 1.21059 0.91044 1.18455 1.23040 0.96615 0.94499 0.77084 1.21353 1.20312 0.88583 1.01036 1.20818 0.96168 0.91288 1.01734 1.20318 1.04487 0.98625 0.94326 1.26663 1.04260 1.01037 0.99578 1.84895 1.66476 1.00689 1.00882 1.85128 1.76876 1.23894 1.30547 1.19364 0.79383 0.80067 0.85461 1.91166 1.58275 1.51303 1.39400 1.21617 0.97436 0.95543 0.86744 1.22529 1.02162 0.96010 0.98570 1.22500 0.86737 1.01580 0.89633 1.87861 1.43184 1.25103 1.73940 1.22562 1.01569 0.81784 0.94831 1.22892 0.99006 1.02089 0.98158 0.92374 0.95294 0.97092 0.86374 0.87482 0.82552 0.80243 0.77512 0.92193 0.94336 0.88423 0.87357 0.93917 0.86398 0.93402 0.89334 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 43.12 27.37 68.60 1.88 44.99 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.42 6.69 99.48 0.67 -9.76 16 7 C -0.52 -29.66 8.90 25.60 0.23 -29.44 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C 0.18 8.44 3.68 85.56 0.32 8.75 16 10 N -0.56 -22.89 4.40 -887.10 -3.90 -26.79 16 11 C 0.30 10.04 5.74 170.81 0.98 11.02 16 12 N -0.43 -14.79 3.67 -600.24 -2.20 -16.99 16 13 N -0.25 -7.46 8.41 -167.23 -1.41 -8.86 16 14 C 0.31 8.51 8.11 87.25 0.71 9.22 16 15 C -0.19 -3.91 6.43 23.89 0.15 -3.76 16 16 C -0.06 -0.94 10.08 21.44 0.22 -0.72 16 17 C -0.15 -1.35 10.16 21.14 0.21 -1.13 16 18 C -0.18 -1.48 11.23 66.79 0.75 -0.73 16 19 S 0.21 3.17 23.30 -56.49 -1.32 1.85 16 20 O -0.27 -8.53 10.70 11.78 0.13 -8.40 16 21 C 0.61 22.61 9.24 129.76 1.20 23.81 16 22 O -0.52 -22.53 17.76 18.81 0.33 -22.20 16 23 C 0.09 3.48 2.10 45.04 0.09 3.58 16 24 C -0.15 -5.36 5.66 30.69 0.17 -5.18 16 25 C 0.07 2.06 6.84 72.01 0.49 2.56 16 26 O -0.38 -10.37 10.77 -148.98 -1.60 -11.97 16 27 C 0.07 1.70 6.84 72.01 0.49 2.20 16 28 C -0.18 -5.12 4.13 30.68 0.13 -4.99 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.03 1.36 7.04 -2.39 -0.02 1.35 16 31 H 0.01 0.49 7.21 -2.39 -0.02 0.47 16 32 H 0.12 3.32 4.72 -2.38 -0.01 3.31 16 33 H 0.11 3.67 7.27 -2.39 -0.02 3.65 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.21 0.31 8.06 -2.91 -0.02 0.28 16 37 H 0.06 2.60 7.05 -2.38 -0.02 2.59 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 3.30 4.06 -2.39 -0.01 3.29 16 40 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 2.42 5.25 -2.38 -0.01 2.41 16 45 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -75.81 377.74 -0.19 -76.00 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.00 Total: 15.03 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.61 Total: 16.25 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -7.21 Total: -111.55 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.14 Total: -42.57 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.85 kcal Total: -75.81 -0.19 -76.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.898 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds