Wall clock time and date at job start Tue Mar 31 2020 05:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47282 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.46738 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46907 * 119.99466 * 3 2 1 7 7 C 1.39984 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99339 * 192.21028 * 7 2 1 9 9 C 1.41062 * 120.00350 * 12.21543 * 7 2 1 10 10 C 1.40913 * 120.16046 * 207.40310 * 9 7 2 11 11 C 1.36328 * 119.83372 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16464 * 0.02562 * 11 10 9 13 13 N 1.38936 * 119.83982 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99597 * 34.37061 * 13 12 11 15 15 O 1.21391 * 120.00230 * 4.87677 * 14 13 12 16 16 C 1.49277 * 119.99992 * 184.87305 * 14 13 12 17 17 O 1.21370 * 119.99758 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99992 * 180.02562 * 16 14 13 19 19 C 1.46498 * 119.99767 * 185.86848 * 18 16 14 20 20 C 1.50704 * 112.84924 * 285.39585 * 19 18 16 21 21 C 1.38237 * 119.99779 * 167.18449 * 20 19 18 22 22 C 1.38234 * 119.99824 * 179.78658 * 21 20 19 23 23 C 1.38239 * 119.99826 * 0.47110 * 22 21 20 24 24 C 1.38240 * 120.00089 * 359.76181 * 23 22 21 25 25 C 1.38230 * 119.99806 * 0.02562 * 24 23 22 26 26 C 1.53777 * 113.61601 * 154.09146 * 19 18 16 27 27 C 1.53779 * 87.08316 * 270.88373 * 26 19 18 28 28 C 1.53783 * 87.08073 * 334.56672 * 27 26 19 29 29 C 1.39566 * 120.32022 * 0.25135 * 12 11 10 30 30 C 1.36325 * 120.16758 * 359.48192 * 29 12 11 31 31 H 0.96998 * 119.99726 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.08064 * 0.02562 * 10 9 7 33 33 H 1.07995 * 119.91435 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00257 * 214.09597 * 13 12 11 35 35 H 0.96995 * 119.99923 * 5.86822 * 18 16 14 36 36 H 1.07995 * 120.00272 * 0.02562 * 21 20 19 37 37 H 1.07999 * 120.00626 * 180.25724 * 22 21 20 38 38 H 1.08001 * 120.00301 * 179.78762 * 23 22 21 39 39 H 1.07996 * 119.99874 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.99736 * 179.97438 * 25 24 23 41 41 H 1.09007 * 113.61366 * 25.42996 * 26 19 18 42 42 H 1.09007 * 113.61833 * 156.33077 * 26 19 18 43 43 H 1.08997 * 113.61631 * 220.01802 * 27 26 19 44 44 H 1.08996 * 113.61794 * 89.11095 * 27 26 19 45 45 H 1.09006 * 113.61123 * 270.88928 * 28 27 26 46 46 H 1.08997 * 113.69620 * 139.99439 * 28 27 26 47 47 H 1.08003 * 119.91639 * 179.74987 * 29 12 11 48 48 H 1.07999 * 120.08677 * 180.23213 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0081 -1.2123 0.0005 8 1 3.0698 -1.2228 0.1984 9 6 1.3267 -2.4203 -0.2574 10 6 1.8081 -3.6325 0.2759 11 6 1.1447 -4.7961 0.0220 12 6 -0.0083 -4.7887 -0.7645 13 7 -0.6788 -5.9785 -1.0194 14 6 -0.7205 -6.9433 -0.0792 15 8 -0.2495 -6.7395 1.0209 16 6 -1.3460 -8.2624 -0.3906 17 8 -1.8166 -8.4663 -1.4906 18 7 -1.3881 -9.2270 0.5497 19 6 -1.8842 -10.5623 0.2076 20 6 -3.3827 -10.6085 0.0547 21 6 -3.9852 -11.7122 -0.5195 22 6 -5.3601 -11.7565 -0.6557 23 6 -6.1318 -10.6929 -0.2265 24 6 -5.5289 -9.5871 0.3434 25 6 -4.1543 -9.5447 0.4835 26 6 -1.3199 -11.6774 1.1036 27 6 -0.1620 -11.7916 0.0980 28 6 -1.1256 -11.2217 -0.9564 29 6 -0.4877 -3.5927 -1.3008 30 6 0.1621 -2.4207 -1.0509 31 1 -0.4849 0.8400 -0.0004 32 1 2.7004 -3.6397 0.8843 33 1 1.5127 -5.7259 0.4297 34 1 -1.1204 -6.1133 -1.8725 35 1 -1.0900 -9.0371 1.4530 36 1 -3.3821 -12.5416 -0.8583 37 1 -5.8312 -12.6205 -1.1006 38 1 -7.2057 -10.7259 -0.3360 39 1 -6.1318 -8.7563 0.6791 40 1 -3.6833 -8.6806 0.9284 41 1 -1.0095 -11.3305 2.0893 42 1 -1.9509 -12.5652 1.1457 43 1 0.1443 -12.8187 -0.1003 44 1 0.6778 -11.1342 0.3226 45 1 -1.7036 -11.9850 -1.4775 46 1 -0.6597 -10.5069 -1.6346 47 1 -1.3783 -3.5951 -1.9118 48 1 -0.2121 -1.4954 -1.4635 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069967697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:39 Heat of formation + Delta-G solvation = 9.387326 kcal Electronic energy + Delta-G solvation = -31497.933868 eV Core-core repulsion = 27290.402218 eV Total energy + Delta-G solvation = -4207.531649 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.33804 -39.92097 -38.56813 -37.81005 -37.14996 -34.76736 -33.48857 -32.90601 -31.23190 -30.96419 -29.67496 -29.10501 -26.43822 -26.10045 -25.22799 -23.73356 -22.71553 -21.83619 -21.49438 -20.82482 -19.80282 -19.33087 -18.29625 -17.68187 -17.39627 -16.62327 -16.00774 -15.86560 -15.65613 -15.44269 -15.23489 -14.89746 -14.67542 -14.17571 -14.01767 -13.81969 -13.64088 -13.52940 -13.29088 -12.94993 -12.74193 -12.63002 -12.20422 -12.15080 -11.91445 -11.88423 -11.52388 -11.39287 -11.31822 -11.16587 -11.11657 -11.04985 -10.94709 -10.80335 -10.72351 -9.99538 -9.65405 -9.44455 -9.36007 -9.17667 -9.07180 -8.99873 -8.80870 -7.62765 -7.04845 -6.78764 -4.38796 1.15846 1.24916 1.55806 2.45560 2.69755 3.02737 3.04508 3.06194 3.11529 3.54174 3.56345 3.86825 3.89633 4.19464 4.32260 4.36710 4.54048 4.58267 4.71643 4.80560 4.82651 4.94474 4.97731 5.32075 5.33423 5.36053 5.44567 5.56377 5.61614 5.71401 5.76866 5.79636 5.81783 5.92979 6.14091 6.19631 6.29533 6.30981 6.36477 6.50944 6.64057 6.76261 6.82272 6.96115 7.06083 7.11141 7.20018 7.51681 7.58153 7.69017 7.90771 7.96573 8.15867 8.19884 8.45896 8.56441 8.80833 8.90070 10.12923 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.001938 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.631215 B =14444.933428 C =15350.504452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.108 3.892 10 C -0.215 4.215 11 C -0.072 4.072 12 C -0.018 4.018 13 N -0.610 5.610 14 C 0.484 3.516 15 O -0.516 6.516 16 C 0.514 3.486 17 O -0.511 6.511 18 N -0.687 5.687 19 C 0.187 3.813 20 C -0.071 4.071 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.102 4.102 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.134 4.134 29 C -0.107 4.107 30 C -0.150 4.150 31 H 0.282 0.718 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.415 0.585 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -21.619 -0.304 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.235 4.235 11 C -0.092 4.092 12 C -0.110 4.110 13 N -0.253 5.253 14 C 0.265 3.735 15 O -0.393 6.393 16 C 0.295 3.705 17 O -0.385 6.385 18 N -0.341 5.341 19 C 0.100 3.900 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.167 4.167 27 C -0.179 4.179 28 C -0.172 4.172 29 C -0.127 4.127 30 C -0.170 4.170 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.242 0.758 35 H 0.253 0.747 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.898 -21.457 -0.322 22.867 hybrid contribution 0.055 0.929 0.101 0.936 sum -7.843 -20.528 -0.221 21.977 Atomic orbital electron populations 1.69783 1.07534 1.29418 1.35159 1.25967 0.94862 1.01450 0.92334 0.86280 0.80010 0.79936 0.80003 1.18793 1.20295 1.18946 1.19569 0.96407 0.90624 1.41655 0.90289 1.17707 0.91494 0.92213 0.88061 1.20668 1.03246 0.92867 1.06697 1.20224 0.93294 0.97695 0.97981 1.17151 0.97486 0.83713 1.12640 1.42671 1.51118 1.14623 1.16887 1.19896 0.82732 0.85454 0.85433 1.90765 1.46440 1.80453 1.21661 1.20380 0.79738 0.85468 0.84914 1.90753 1.44290 1.81017 1.22432 1.45365 1.64853 1.09582 1.14288 1.20102 0.89363 0.82182 0.98378 1.19802 0.94080 0.94740 0.98611 1.20878 0.94751 0.97857 0.99563 1.21077 0.93731 0.98703 1.00306 1.21144 0.99792 0.94035 0.99178 1.21161 0.94751 0.98254 0.99344 1.20993 0.93747 0.98017 0.99304 1.23269 0.97795 0.97375 0.98247 1.22902 0.96991 1.01814 0.96196 1.23322 0.97523 1.00051 0.96338 1.20260 0.98961 0.91710 1.01748 1.20972 0.98712 0.96181 1.01153 0.90685 0.88481 0.88064 0.75781 0.74742 0.85970 0.86097 0.86228 0.86105 0.86459 0.90308 0.88320 0.90759 0.89716 0.88748 0.89965 0.88876 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.10 10.82 55.55 0.60 -19.50 16 2 C 0.07 1.76 5.23 -17.33 -0.09 1.67 16 3 Si 0.91 18.29 29.58 -169.99 -5.03 13.26 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.76 9.05 -37.86 -0.34 -12.10 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.54 16 9 C 0.11 2.84 5.56 -106.80 -0.59 2.24 16 10 C -0.21 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.07 -1.69 8.57 -39.77 -0.34 -2.03 16 12 C -0.02 -0.39 6.27 -83.65 -0.52 -0.91 16 13 N -0.61 -11.38 5.29 -10.20 -0.05 -11.43 16 14 C 0.48 8.65 7.60 -11.67 -0.09 8.56 16 15 O -0.52 -10.41 14.18 5.46 0.08 -10.33 16 16 C 0.51 7.67 6.64 -11.67 -0.08 7.59 16 17 O -0.51 -8.32 14.93 5.48 0.08 -8.23 16 18 N -0.69 -8.16 4.07 -48.40 -0.20 -8.35 16 19 C 0.19 1.89 0.94 -132.16 -0.12 1.77 16 20 C -0.07 -0.78 4.93 -104.62 -0.52 -1.29 16 21 C -0.11 -1.05 8.70 -39.58 -0.34 -1.40 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 25 C -0.10 -1.23 9.12 -39.59 -0.36 -1.59 16 26 C -0.13 -0.96 7.31 -25.92 -0.19 -1.15 16 27 C -0.14 -1.09 7.99 -25.92 -0.21 -1.30 16 28 C -0.13 -1.30 6.70 -25.92 -0.17 -1.47 16 29 C -0.11 -2.43 9.89 -39.78 -0.39 -2.83 16 30 C -0.15 -3.81 8.61 -39.26 -0.34 -4.14 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.10 2.29 6.45 -52.49 -0.34 1.95 16 34 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 35 H 0.42 4.56 8.22 -40.82 -0.34 4.23 16 36 H 0.12 0.89 6.57 -52.49 -0.34 0.54 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.48 6.89 -52.48 -0.36 1.12 16 41 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.10 0.61 7.78 -51.93 -0.40 0.20 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.78 6.24 -51.93 -0.32 0.45 16 46 H 0.08 0.99 6.81 -51.93 -0.35 0.64 16 47 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 48 H 0.13 3.24 6.16 -52.49 -0.32 2.92 16 LS Contribution 397.46 15.07 5.99 5.99 Total: -1.00 -29.81 397.46 -10.86 -40.67 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -6.05 Total: 16.71 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -6.28 Total: -18.77 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.81 -10.86 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069967697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.057 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds