Wall clock time and date at job start Tue Mar 31 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47282 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.46738 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46907 * 119.99466 * 3 2 1 7 7 C 1.39984 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99339 * 192.21028 * 7 2 1 9 9 C 1.41062 * 120.00350 * 12.21543 * 7 2 1 10 10 C 1.40913 * 120.16046 * 207.40310 * 9 7 2 11 11 C 1.36328 * 119.83372 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16464 * 0.02562 * 11 10 9 13 13 N 1.38936 * 119.83982 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99597 * 34.37061 * 13 12 11 15 15 O 1.21391 * 120.00230 * 4.87677 * 14 13 12 16 16 C 1.49277 * 119.99992 * 184.87305 * 14 13 12 17 17 O 1.21370 * 119.99758 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99992 * 180.02562 * 16 14 13 19 19 C 1.46498 * 119.99767 * 185.86848 * 18 16 14 20 20 C 1.50704 * 112.84924 * 285.39585 * 19 18 16 21 21 C 1.38237 * 119.99779 * 167.18449 * 20 19 18 22 22 C 1.38234 * 119.99824 * 179.78658 * 21 20 19 23 23 C 1.38239 * 119.99826 * 0.47110 * 22 21 20 24 24 C 1.38240 * 120.00089 * 359.76181 * 23 22 21 25 25 C 1.38230 * 119.99806 * 0.02562 * 24 23 22 26 26 C 1.53777 * 113.61601 * 154.09146 * 19 18 16 27 27 C 1.53779 * 87.08316 * 270.88373 * 26 19 18 28 28 C 1.53783 * 87.08073 * 334.56672 * 27 26 19 29 29 C 1.39566 * 120.32022 * 0.25135 * 12 11 10 30 30 C 1.36325 * 120.16758 * 359.48192 * 29 12 11 31 31 H 0.96998 * 119.99726 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.08064 * 0.02562 * 10 9 7 33 33 H 1.07995 * 119.91435 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00257 * 214.09597 * 13 12 11 35 35 H 0.96995 * 119.99923 * 5.86822 * 18 16 14 36 36 H 1.07995 * 120.00272 * 0.02562 * 21 20 19 37 37 H 1.07999 * 120.00626 * 180.25724 * 22 21 20 38 38 H 1.08001 * 120.00301 * 179.78762 * 23 22 21 39 39 H 1.07996 * 119.99874 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.99736 * 179.97438 * 25 24 23 41 41 H 1.09007 * 113.61366 * 25.42996 * 26 19 18 42 42 H 1.09007 * 113.61833 * 156.33077 * 26 19 18 43 43 H 1.08997 * 113.61631 * 220.01802 * 27 26 19 44 44 H 1.08996 * 113.61794 * 89.11095 * 27 26 19 45 45 H 1.09006 * 113.61123 * 270.88928 * 28 27 26 46 46 H 1.08997 * 113.69620 * 139.99439 * 28 27 26 47 47 H 1.08003 * 119.91639 * 179.74987 * 29 12 11 48 48 H 1.07999 * 120.08677 * 180.23213 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0081 -1.2123 0.0005 8 1 3.0698 -1.2228 0.1984 9 6 1.3267 -2.4203 -0.2574 10 6 1.8081 -3.6325 0.2759 11 6 1.1447 -4.7961 0.0220 12 6 -0.0083 -4.7887 -0.7645 13 7 -0.6788 -5.9785 -1.0194 14 6 -0.7205 -6.9433 -0.0792 15 8 -0.2495 -6.7395 1.0209 16 6 -1.3460 -8.2624 -0.3906 17 8 -1.8166 -8.4663 -1.4906 18 7 -1.3881 -9.2270 0.5497 19 6 -1.8842 -10.5623 0.2076 20 6 -3.3827 -10.6085 0.0547 21 6 -3.9852 -11.7122 -0.5195 22 6 -5.3601 -11.7565 -0.6557 23 6 -6.1318 -10.6929 -0.2265 24 6 -5.5289 -9.5871 0.3434 25 6 -4.1543 -9.5447 0.4835 26 6 -1.3199 -11.6774 1.1036 27 6 -0.1620 -11.7916 0.0980 28 6 -1.1256 -11.2217 -0.9564 29 6 -0.4877 -3.5927 -1.3008 30 6 0.1621 -2.4207 -1.0509 31 1 -0.4849 0.8400 -0.0004 32 1 2.7004 -3.6397 0.8843 33 1 1.5127 -5.7259 0.4297 34 1 -1.1204 -6.1133 -1.8725 35 1 -1.0900 -9.0371 1.4530 36 1 -3.3821 -12.5416 -0.8583 37 1 -5.8312 -12.6205 -1.1006 38 1 -7.2057 -10.7259 -0.3360 39 1 -6.1318 -8.7563 0.6791 40 1 -3.6833 -8.6806 0.9284 41 1 -1.0095 -11.3305 2.0893 42 1 -1.9509 -12.5652 1.1457 43 1 0.1443 -12.8187 -0.1003 44 1 0.6778 -11.1342 0.3226 45 1 -1.7036 -11.9850 -1.4775 46 1 -0.6597 -10.5069 -1.6346 47 1 -1.3783 -3.5951 -1.9118 48 1 -0.2121 -1.4954 -1.4635 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069967697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:38 Heat of formation + Delta-G solvation = -6.233058 kcal Electronic energy + Delta-G solvation = -31498.611218 eV Core-core repulsion = 27290.402218 eV Total energy + Delta-G solvation = -4208.209000 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.37145 -41.23343 -39.74786 -38.98019 -38.58197 -36.44242 -34.93530 -34.32086 -31.97942 -31.71228 -31.55911 -30.95158 -27.81266 -26.84441 -26.44566 -25.05369 -23.57234 -23.30647 -22.66509 -22.29979 -21.26731 -20.22328 -19.68360 -19.27715 -18.47482 -18.10105 -17.35687 -17.07697 -16.87554 -16.78956 -16.29206 -15.82862 -15.70614 -15.60530 -15.26907 -15.18884 -14.73575 -14.51723 -14.47146 -14.27014 -14.06486 -14.03116 -13.70936 -13.30998 -13.28214 -12.92895 -12.87024 -12.83613 -12.77603 -12.57854 -12.43053 -12.03308 -11.85956 -11.76519 -11.66182 -11.48270 -11.46424 -11.23066 -10.86708 -10.58314 -10.32279 -9.82385 -9.57360 -9.53427 -8.91681 -8.62251 -6.33405 0.15337 0.41780 0.49421 0.90269 1.10445 1.27958 1.39931 1.51161 1.53265 2.12416 2.21137 2.61550 2.73456 2.81261 3.37027 3.50421 3.61736 3.64391 3.68048 3.87016 4.05346 4.11714 4.25377 4.27084 4.33209 4.42280 4.61632 4.62519 4.75881 4.81436 4.85645 4.94965 4.99465 5.01130 5.04991 5.05200 5.07436 5.09386 5.19550 5.23582 5.32618 5.44485 5.56526 5.60338 5.62258 5.67323 5.76043 5.85279 6.01934 6.07771 6.10625 6.29620 6.43831 6.60449 6.74623 6.88825 6.89542 7.06115 8.31596 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.001938 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.631215 B =14444.933428 C =15350.504452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.078 3.922 10 C -0.229 4.229 11 C -0.080 4.080 12 C -0.005 4.005 13 N -0.610 5.610 14 C 0.486 3.514 15 O -0.539 6.539 16 C 0.524 3.476 17 O -0.524 6.524 18 N -0.671 5.671 19 C 0.173 3.827 20 C -0.082 4.082 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.116 4.116 27 C -0.135 4.135 28 C -0.137 4.137 29 C -0.107 4.107 30 C -0.168 4.168 31 H 0.290 0.710 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.419 0.581 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.054 0.946 47 H 0.120 0.880 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -23.979 -0.567 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.518 4.518 8 H 0.097 0.903 9 C 0.075 3.925 10 C -0.249 4.249 11 C -0.100 4.100 12 C -0.099 4.099 13 N -0.255 5.255 14 C 0.269 3.731 15 O -0.416 6.416 16 C 0.304 3.696 17 O -0.400 6.400 18 N -0.324 5.324 19 C 0.087 3.913 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.172 4.172 28 C -0.175 4.175 29 C -0.127 4.127 30 C -0.188 4.188 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.257 0.743 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.703 -23.869 -0.576 25.412 hybrid contribution 0.189 1.462 0.194 1.487 sum -8.514 -22.407 -0.382 23.973 Atomic orbital electron populations 1.69836 1.08931 1.30744 1.35569 1.26825 0.95645 1.04621 0.91258 0.85167 0.78649 0.75317 0.80076 1.18260 1.19188 1.18522 1.19817 0.96685 0.91669 1.43607 0.90289 1.18039 0.92424 0.93029 0.88980 1.20821 1.03780 0.93129 1.07138 1.20351 0.93736 0.97513 0.98380 1.17199 0.96859 0.84865 1.10945 1.42595 1.51224 1.13808 1.17857 1.20464 0.81704 0.86223 0.84731 1.90751 1.47184 1.81092 1.22611 1.19716 0.79847 0.84719 0.85276 1.90752 1.45227 1.80959 1.23037 1.45344 1.63428 1.09912 1.13727 1.20476 0.89344 0.81442 1.00083 1.19941 0.94212 0.95117 0.99056 1.21185 0.95393 0.97917 0.98840 1.21475 0.93666 0.99275 0.99324 1.21455 1.01095 0.93631 0.98523 1.21345 0.94519 0.99266 0.99971 1.21016 0.94611 0.98245 1.00960 1.23300 0.97385 0.96686 0.97993 1.22863 0.96392 1.02697 0.95235 1.23392 0.98093 0.99913 0.96072 1.20485 0.99456 0.91131 1.01667 1.20966 0.99252 0.96690 1.01934 0.89960 0.88023 0.87438 0.74371 0.74267 0.83536 0.83264 0.84127 0.85689 0.88276 0.89669 0.86219 0.88526 0.90875 0.86982 0.92733 0.86225 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.72 10.82 21.83 0.24 -42.48 16 2 C 0.03 1.56 5.23 85.27 0.45 2.01 16 3 Si 0.99 37.73 29.58 68.60 2.03 39.76 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 7 C -0.49 -26.21 9.05 23.39 0.21 -26.00 16 8 H 0.08 4.06 7.88 -2.91 -0.02 4.03 16 9 C 0.08 4.25 5.56 -21.27 -0.12 4.13 16 10 C -0.23 -11.70 9.74 22.48 0.22 -11.48 16 11 C -0.08 -3.82 8.57 22.15 0.19 -3.63 16 12 C -0.01 -0.25 6.27 38.66 0.24 0.00 16 13 N -0.61 -22.69 5.29 -304.53 -1.61 -24.30 16 14 C 0.49 17.41 7.60 87.22 0.66 18.07 16 15 O -0.54 -21.84 14.18 -3.37 -0.05 -21.89 16 16 C 0.52 15.56 6.64 87.22 0.58 16.14 16 17 O -0.52 -16.91 14.93 -3.31 -0.05 -16.96 16 18 N -0.67 -15.61 4.07 -425.41 -1.73 -17.34 16 19 C 0.17 3.23 0.94 3.39 0.00 3.23 16 20 C -0.08 -1.67 4.93 -19.86 -0.10 -1.77 16 21 C -0.12 -1.84 8.70 22.27 0.19 -1.64 16 22 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 25 C -0.13 -3.09 9.12 22.27 0.20 -2.88 16 26 C -0.12 -1.40 7.31 31.12 0.23 -1.17 16 27 C -0.13 -1.74 7.99 31.12 0.25 -1.49 16 28 C -0.14 -2.38 6.70 31.12 0.21 -2.17 16 29 C -0.11 -4.95 9.89 22.14 0.22 -4.73 16 30 C -0.17 -8.80 8.61 22.48 0.19 -8.60 16 31 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 32 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.11 4.93 6.45 -2.91 -0.02 4.91 16 34 H 0.42 13.60 8.29 -92.71 -0.77 12.83 16 35 H 0.42 9.05 8.22 -92.71 -0.76 8.29 16 36 H 0.15 1.53 6.57 -2.91 -0.02 1.51 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.10 2.60 6.89 -2.91 -0.02 2.58 16 41 H 0.08 0.95 8.12 -2.38 -0.02 0.93 16 42 H 0.12 1.00 7.78 -2.38 -0.02 0.98 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.51 6.24 -2.38 -0.01 1.50 16 46 H 0.05 1.27 6.81 -2.39 -0.02 1.25 16 47 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 48 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 Total: -1.00 -66.34 397.46 2.83 -63.52 By element: Atomic # 1 Polarization: 48.23 SS G_CDS: -0.50 Total: 47.73 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.50 Total: -28.04 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.10 Total: -84.11 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.10 Total: -38.84 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -66.34 2.83 -63.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069967697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.282 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds