Wall clock time and date at job start Tue Mar 31 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38145 * 125.60445 * 2 1 4 4 C 1.47003 * 125.43535 * 359.97123 * 3 2 1 5 5 O 1.21659 * 120.00092 * 5.26717 * 4 3 2 6 6 N 1.34776 * 120.00189 * 185.27471 * 4 3 2 7 7 C 1.39466 * 120.00424 * 174.66496 * 6 4 3 8 8 N 1.32297 * 119.72771 * 0.02562 * 7 6 4 9 9 C 1.31953 * 121.68988 * 179.97438 * 8 7 6 10 10 C 1.38090 * 120.95705 * 359.97438 * 9 8 7 11 11 C 1.38785 * 119.35636 * 0.29483 * 10 9 8 12 12 C 1.38785 * 118.45035 * 359.43730 * 11 10 9 13 13 O 1.35984 * 120.49639 * 180.30872 * 12 11 10 14 14 C 1.42891 * 117.00173 * 0.25734 * 13 12 11 15 15 C 1.52999 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47696 * 179.97438 * 15 14 13 17 17 H 1.08010 * 119.99166 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00343 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00051 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47009 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47350 * 119.99981 * 20 18 16 23 23 H 1.48501 * 109.47125 * 240.00527 * 20 18 16 24 24 C 1.35903 * 109.13355 * 180.22929 * 3 2 1 25 25 C 1.41580 * 107.72219 * 359.58362 * 24 3 2 26 26 C 1.40111 * 133.37422 * 180.18393 * 25 24 3 27 27 C 1.36438 * 119.82597 * 180.31486 * 26 25 24 28 28 C 1.38939 * 120.62187 * 359.95182 * 27 26 25 29 29 C 1.37673 * 120.64300 * 0.02562 * 28 27 26 30 30 C 1.37495 * 125.60637 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46970 * 94.31773 * 1 2 3 32 32 H 1.08995 * 109.46789 * 214.31326 * 1 2 3 33 33 H 1.08997 * 109.47094 * 334.31647 * 1 2 3 34 34 H 0.97002 * 119.99763 * 354.67073 * 6 4 3 35 35 H 1.08000 * 119.52525 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.32100 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.77543 * 179.72483 * 11 10 9 38 38 H 1.09005 * 109.47361 * 300.00157 * 14 13 12 39 39 H 1.08996 * 109.47259 * 59.99872 * 14 13 12 40 40 H 1.09005 * 109.47034 * 300.00408 * 15 14 13 41 41 H 1.09004 * 109.46817 * 60.00036 * 15 14 13 42 42 H 0.96989 * 119.99975 * 179.97438 * 19 18 16 43 43 H 1.07991 * 126.14022 * 179.72204 * 24 3 2 44 44 H 1.07999 * 120.08390 * 0.27118 * 26 25 24 45 45 H 1.08003 * 119.68581 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.67549 * 180.02562 * 28 27 26 47 47 H 1.08004 * 120.09152 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.1232 0.0000 4 6 1.7917 2.5135 -0.0006 5 8 0.6018 2.7479 0.0956 6 7 2.6719 3.5284 -0.1078 7 6 2.2131 4.8406 -0.2205 8 7 0.9125 5.0830 -0.2210 9 6 0.4359 6.3091 -0.3249 10 6 1.2835 7.3935 -0.4374 11 6 2.6558 7.1863 -0.4470 12 6 3.1291 5.8869 -0.3304 13 8 4.4658 5.6369 -0.3287 14 6 5.3367 6.7637 -0.4455 15 6 6.7909 6.2887 -0.4244 16 6 7.7095 7.4769 -0.5482 17 1 7.2971 8.4716 -0.6329 18 6 9.0761 7.2944 -0.5522 19 7 9.5781 6.0833 -0.4485 20 14 10.2146 8.7675 -0.7049 21 1 9.4065 10.0092 -0.8074 22 1 11.0895 8.8432 0.4925 23 1 11.0528 8.6212 -1.9220 24 6 3.5726 0.7379 -0.0051 25 6 3.6035 -0.6776 0.0013 26 6 4.6428 -1.6173 0.0034 27 6 4.3522 -2.9504 0.0036 28 6 3.0333 -3.3873 0.0027 29 6 1.9947 -2.4835 0.0011 30 6 2.2656 -1.1179 0.0005 31 1 -0.3633 -0.0774 -1.0247 32 1 -0.3633 -0.8488 0.5793 33 1 -0.3633 0.9261 0.4454 34 1 3.6247 3.3462 -0.1068 35 1 -0.6325 6.4669 -0.3220 36 1 0.8824 8.3926 -0.5215 37 1 3.3395 8.0173 -0.5384 38 1 5.1368 7.2818 -1.3835 39 1 5.1649 7.4436 0.3889 40 1 6.9905 5.7708 0.5138 41 1 6.9630 5.6084 -1.2586 42 1 10.5395 5.9549 -0.4517 43 1 4.4306 1.3936 -0.0106 44 1 5.6711 -1.2873 0.0041 45 1 5.1551 -3.6728 0.0048 46 1 2.8208 -4.4461 0.0033 47 1 0.9728 -2.8329 0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069975329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:16 Heat of formation + Delta-G solvation = 38.006721 kcal Electronic energy + Delta-G solvation = -31197.150926 eV Core-core repulsion = 26925.434396 eV Total energy + Delta-G solvation = -4271.716530 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.86892 -40.82711 -39.15513 -37.83487 -37.00935 -35.08337 -33.50346 -33.26029 -31.72527 -30.75413 -30.49604 -29.73467 -28.69936 -26.55923 -25.48704 -24.77348 -23.25246 -22.74519 -21.73503 -21.36038 -20.85368 -19.97073 -18.57884 -17.74473 -17.34483 -16.96396 -16.42528 -16.15126 -16.04511 -15.90322 -15.64408 -15.09133 -14.80370 -14.72896 -14.58738 -14.25101 -14.13249 -13.99426 -13.58900 -13.49482 -13.22368 -13.09631 -12.88625 -12.55104 -12.42207 -12.07069 -11.96312 -11.86389 -11.45197 -11.10354 -11.07117 -11.02320 -10.83623 -10.68806 -10.39222 -10.07619 -9.96259 -9.79374 -9.41566 -9.29082 -9.15858 -8.53176 -8.41086 -7.90023 -7.71376 -6.18519 -4.23449 0.52902 1.17473 1.38984 1.45248 2.00122 2.22332 2.99810 3.18864 3.21478 3.28463 3.31389 3.48053 3.72749 3.96130 4.20167 4.33262 4.42874 4.59798 4.66574 4.81630 4.89855 4.93276 5.01981 5.07948 5.17051 5.18535 5.21449 5.24105 5.37318 5.40685 5.45028 5.54885 5.68518 5.82156 5.83683 5.87739 5.99963 6.12050 6.24221 6.25773 6.40133 6.44623 6.51515 6.51809 6.58103 6.86726 7.01239 7.13886 7.31975 7.51693 7.60747 7.82138 7.93606 8.13460 8.21305 8.81877 9.41641 10.92912 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.002486 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.498976 B =11259.457823 C =14755.661289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C 0.022 3.978 4 C 0.578 3.422 5 O -0.481 6.481 6 N -0.637 5.637 7 C 0.328 3.672 8 N -0.444 5.444 9 C 0.075 3.925 10 C -0.157 4.157 11 C -0.147 4.147 12 C 0.072 3.928 13 O -0.315 6.315 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.137 4.137 25 C -0.116 4.116 26 C -0.058 4.058 27 C -0.152 4.152 28 C -0.090 4.090 29 C -0.131 4.131 30 C 0.108 3.892 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.428 0.572 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.157 0.843 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 -12.899 0.723 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.131 5.131 3 C -0.088 4.088 4 C 0.364 3.636 5 O -0.353 6.353 6 N -0.285 5.285 7 C 0.096 3.904 8 N -0.159 5.159 9 C -0.082 4.082 10 C -0.178 4.178 11 C -0.174 4.174 12 C 0.021 3.979 13 O -0.228 6.228 14 C -0.008 4.008 15 C -0.011 4.011 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.163 4.163 25 C -0.120 4.120 26 C -0.077 4.077 27 C -0.171 4.171 28 C -0.110 4.110 29 C -0.152 4.152 30 C -0.001 4.001 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.267 0.733 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.175 0.825 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.665 -13.725 0.878 23.185 hybrid contribution 1.726 1.653 -0.209 2.399 sum -16.939 -12.072 0.669 20.812 Atomic orbital electron populations 1.22243 0.75883 1.05644 1.03361 1.43788 1.06214 1.03004 1.60065 1.19651 0.90255 0.87286 1.11606 1.17154 0.85936 0.83073 0.77444 1.90843 1.14944 1.84152 1.45385 1.42979 1.11353 1.03044 1.71093 1.17652 0.88246 0.83227 1.01303 1.67583 1.10760 1.23988 1.13544 1.22400 1.00255 0.86478 0.99051 1.21916 0.93111 1.00685 1.02052 1.21623 0.96893 0.95777 1.03109 1.19562 0.85340 0.92897 1.00129 1.86108 1.11401 1.38242 1.87008 1.23419 0.91415 0.86250 0.99732 1.19138 0.85237 0.97778 0.98952 1.20974 0.90931 0.92773 1.51941 0.92304 1.24976 0.98249 0.96050 0.94819 1.69966 1.12616 1.20654 1.49326 0.86440 0.80681 0.82488 0.77837 1.19647 1.20795 1.20799 1.21112 0.95003 0.94331 1.05873 1.18159 0.92481 0.93341 1.08043 1.20481 0.98130 0.92082 0.96966 1.20641 0.96521 0.95562 1.04381 1.20860 0.92226 0.98880 0.99018 1.20016 0.99655 0.88937 1.06571 1.18376 0.89881 0.88300 1.03556 0.91126 0.90433 0.87241 0.73343 0.82535 0.84672 0.83576 0.92871 0.92874 0.95284 0.95284 0.92675 0.82548 0.85425 0.85864 0.85685 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.69 59.85 0.64 1.33 16 2 N -0.45 -5.61 3.22 -117.71 -0.38 -5.99 16 3 C 0.02 0.30 6.81 -82.31 -0.56 -0.26 16 4 C 0.58 8.70 7.74 -12.71 -0.10 8.60 16 5 O -0.48 -8.13 12.72 5.23 0.07 -8.06 16 6 N -0.64 -9.49 5.37 -12.39 -0.07 -9.56 16 7 C 0.33 5.33 7.44 -154.52 -1.15 4.18 16 8 N -0.44 -7.16 7.88 -12.24 -0.10 -7.26 16 9 C 0.07 0.97 11.17 -17.55 -0.20 0.77 16 10 C -0.16 -1.86 10.10 -39.43 -0.40 -2.26 16 11 C -0.15 -2.07 9.14 -39.18 -0.36 -2.42 16 12 C 0.07 1.17 6.72 -38.91 -0.26 0.91 16 13 O -0.31 -5.66 9.38 -19.69 -0.18 -5.84 16 14 C 0.07 1.27 4.70 37.16 0.17 1.44 16 15 C 0.03 0.63 5.34 -27.88 -0.15 0.48 16 16 C -0.53 -13.94 9.11 -34.44 -0.31 -14.25 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 20 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.14 -1.72 10.29 -39.15 -0.40 -2.12 16 25 C -0.12 -1.44 6.16 -106.93 -0.66 -2.10 16 26 C -0.06 -0.62 10.06 -39.53 -0.40 -1.01 16 27 C -0.15 -1.39 9.96 -39.97 -0.40 -1.78 16 28 C -0.09 -0.78 10.02 -39.53 -0.40 -1.18 16 29 C -0.13 -1.28 10.00 -39.42 -0.39 -1.68 16 30 C 0.11 1.31 6.81 -83.97 -0.57 0.74 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.11 1.24 5.91 -51.93 -0.31 0.94 16 34 H 0.43 5.76 6.83 -40.82 -0.28 5.48 16 35 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.89 6.44 -52.49 -0.34 1.55 16 38 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 43 H 0.16 1.69 7.32 -52.49 -0.38 1.30 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -32.59 399.31 -10.79 -43.38 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.88 Total: 5.41 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -5.99 Total: -9.03 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.19 Total: -47.37 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.12 Total: -13.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.59 -10.79 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069975329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds