Wall clock time and date at job start Tue Mar 31 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00426 * 2 1 4 4 C 1.50698 * 109.47122 * 275.57273 * 3 2 1 5 5 H 1.07997 * 120.00054 * 4.71071 * 4 3 2 6 6 C 1.37880 * 119.99886 * 184.71639 * 4 3 2 7 7 N 1.31517 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00147 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47161 * 89.99619 * 8 6 4 10 10 H 1.48496 * 109.47062 * 209.99702 * 8 6 4 11 11 H 1.48504 * 109.46988 * 329.99556 * 8 6 4 12 12 S 1.65606 * 119.99935 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40327 * 159.57268 * 12 2 1 14 14 O 1.42100 * 106.39954 * 26.65122 * 12 2 1 15 15 N 1.65600 * 107.21782 * 273.11396 * 12 2 1 16 16 C 1.46504 * 119.99955 * 62.77290 * 15 12 2 17 17 C 1.53004 * 109.46886 * 164.44781 * 16 15 12 18 18 N 1.46504 * 109.46886 * 180.02562 * 17 16 15 19 19 C 1.38672 * 120.00009 * 179.97438 * 18 17 16 20 20 C 1.40253 * 119.23232 * 0.02562 * 19 18 17 21 21 C 1.36211 * 119.88489 * 179.97438 * 20 19 18 22 22 C 1.41013 * 118.28890 * 359.97438 * 21 20 19 23 23 C 1.40337 * 121.26190 * 180.02562 * 22 21 20 24 24 C 1.36209 * 119.64147 * 180.02562 * 23 22 21 25 25 C 1.39286 * 120.85039 * 359.95521 * 24 23 22 26 26 C 1.36140 * 121.02782 * 0.02654 * 25 24 23 27 27 C 1.40535 * 119.75717 * 359.97438 * 26 25 24 28 28 N 1.31710 * 119.23379 * 179.72655 * 19 18 17 29 29 H 1.08995 * 109.46952 * 270.00051 * 1 2 3 30 30 H 1.09004 * 109.46475 * 29.99878 * 1 2 3 31 31 H 1.08995 * 109.47383 * 149.99634 * 1 2 3 32 32 H 1.09007 * 109.46733 * 35.57527 * 3 2 1 33 33 H 1.09001 * 109.47356 * 155.56529 * 3 2 1 34 34 H 0.97006 * 119.99804 * 180.02562 * 7 6 4 35 35 H 0.96996 * 119.99980 * 242.77405 * 15 12 2 36 36 H 1.08997 * 109.47138 * 44.44180 * 16 15 12 37 37 H 1.09006 * 109.47224 * 284.44057 * 16 15 12 38 38 H 1.08994 * 109.46916 * 299.99384 * 17 16 15 39 39 H 1.08995 * 109.47223 * 59.99823 * 17 16 15 40 40 H 0.97003 * 120.00112 * 359.97438 * 18 17 16 41 41 H 1.08003 * 120.06108 * 359.97438 * 20 19 18 42 42 H 1.08005 * 120.85968 * 179.97438 * 21 20 19 43 43 H 1.07998 * 120.18497 * 359.95402 * 23 22 21 44 44 H 1.08003 * 119.57403 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.49099 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.11881 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8447 1.2456 -2.2226 6 6 3.0686 2.9068 -1.6757 7 7 3.6584 3.5489 -0.6910 8 14 3.2325 3.5311 -3.4285 9 1 2.1306 4.4831 -3.7200 10 1 4.5378 4.2209 -3.5882 11 1 3.1594 2.3857 -4.3708 12 16 2.2930 -1.4342 -0.0006 13 8 3.6000 -1.1428 -0.4763 14 8 1.4385 -2.3905 -0.6125 15 7 2.4637 -1.9024 1.5786 16 6 1.2783 -2.1973 2.3874 17 6 1.6963 -2.9621 3.6449 18 7 0.5108 -3.2575 4.4534 19 6 0.6412 -3.9489 5.6484 20 6 1.9157 -4.3573 6.0678 21 6 2.0591 -5.0368 7.2396 22 6 0.9033 -5.3087 8.0003 23 6 0.9791 -6.0038 9.2171 24 6 -0.1585 -6.2489 9.9249 25 6 -1.3976 -5.8177 9.4572 26 6 -1.5069 -5.1406 8.2812 27 6 -0.3551 -4.8690 7.5230 28 7 -0.4340 -4.2017 6.3659 29 1 -0.3633 0.0000 1.0276 30 1 -0.3632 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6554 2.0013 0.5979 33 1 3.1895 1.1155 0.4251 34 1 4.1782 4.3469 -0.8750 35 1 3.3485 -1.9814 1.9681 36 1 0.5840 -2.8045 1.8066 37 1 0.7928 -1.2644 2.6742 38 1 2.1816 -3.8950 3.3582 39 1 2.3905 -2.3548 4.2256 40 1 -0.3654 -2.9695 4.1529 41 1 2.7819 -4.1335 5.4628 42 1 3.0330 -5.3591 7.5775 43 1 1.9341 -6.3435 9.5898 44 1 -0.0990 -6.7843 10.8610 45 1 -2.2856 -6.0236 10.0364 46 1 -2.4750 -4.8127 7.9326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070009260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:38 Heat of formation + Delta-G solvation = -38.371085 kcal Electronic energy + Delta-G solvation = -29116.722559 eV Core-core repulsion = 24939.023557 eV Total energy + Delta-G solvation = -4177.699002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.66196 -38.98768 -38.28474 -37.28583 -37.12400 -36.84692 -35.08236 -34.49774 -34.32414 -30.92412 -30.85471 -29.65517 -28.44938 -26.77471 -25.07488 -24.22266 -24.16911 -23.18849 -22.84846 -20.47103 -19.10033 -18.93785 -18.71738 -18.43122 -18.09030 -17.98998 -17.26731 -16.64101 -16.46610 -16.10946 -15.98488 -15.62518 -15.37387 -15.15647 -15.07276 -14.93277 -14.81381 -14.15452 -14.07900 -13.98852 -13.91029 -13.67214 -13.39071 -13.28487 -13.13824 -13.02810 -12.91939 -12.68227 -12.58129 -12.46311 -12.38711 -12.33400 -12.24887 -11.96925 -11.74927 -11.46361 -10.70025 -10.59110 -10.48322 -10.37851 -9.78490 -9.31281 -8.54113 -8.20623 -6.32331 -0.37256 -0.34213 0.07485 1.16977 1.39067 1.41374 1.51610 1.83154 2.13862 2.25971 2.41163 2.69246 3.10822 3.27896 3.44683 3.58817 3.67243 3.83026 3.89867 4.02308 4.09175 4.11295 4.20661 4.33461 4.38744 4.44314 4.46953 4.60388 4.72280 4.81371 4.85157 4.90884 4.92817 5.03493 5.09718 5.17842 5.21551 5.21567 5.44955 5.45733 5.55728 5.63097 5.70697 5.86363 6.00406 6.02180 6.09238 6.15173 6.53438 6.76542 7.22889 7.36807 8.86793 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.001637 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.528842 B =17095.851625 C =17150.119854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.002 6.002 3 C 0.271 3.729 4 C -0.552 4.552 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.274 1.274 12 S 2.803 3.197 13 O -1.008 7.008 14 O -1.009 7.009 15 N -1.115 6.115 16 C 0.106 3.894 17 C 0.126 3.874 18 N -0.715 5.715 19 C 0.417 3.583 20 C -0.228 4.228 21 C -0.019 4.019 22 C -0.173 4.173 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.083 4.083 26 C -0.143 4.143 27 C 0.153 3.847 28 N -0.586 5.586 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.426 0.574 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.409 0.591 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -19.179 22.345 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.844 5.844 3 C 0.147 3.853 4 C -0.592 4.592 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.199 1.199 12 S 2.811 3.189 13 O -0.992 6.992 14 O -0.992 6.992 15 N -0.879 5.879 16 C -0.021 4.021 17 C 0.000 4.000 18 N -0.350 5.350 19 C 0.168 3.832 20 C -0.251 4.251 21 C -0.044 4.044 22 C -0.177 4.177 23 C -0.096 4.096 24 C -0.168 4.168 25 C -0.102 4.102 26 C -0.162 4.162 27 C 0.032 3.968 28 N -0.307 5.307 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.245 0.755 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.168 0.832 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.628 -19.189 21.190 29.346 hybrid contribution 0.757 0.832 -0.573 1.262 sum -5.871 -18.357 20.618 28.223 Atomic orbital electron populations 1.21629 0.78142 1.03642 1.02608 1.57461 1.15698 1.21931 1.89300 1.18627 0.90667 0.80239 0.95767 1.21875 1.31818 1.10636 0.94851 0.92868 1.25743 0.94789 0.96866 1.01380 1.70005 1.33793 1.19338 1.33124 0.85588 0.77975 0.78418 0.79925 1.19119 1.20449 1.19925 1.01077 0.71997 0.72388 0.73461 1.93587 1.41042 1.85139 1.79430 1.93513 1.69092 1.61200 1.75368 1.55621 1.15190 1.85172 1.31904 1.21424 0.87149 1.01002 0.92525 1.21555 0.87568 1.00621 0.90264 1.44325 1.10720 1.60145 1.19766 1.18733 0.89806 0.88254 0.86430 1.21616 0.97099 1.05789 1.00553 1.21701 0.98970 0.91912 0.91849 1.19013 0.94040 1.05505 0.99113 1.21289 1.00407 0.95670 0.92278 1.21188 0.92092 1.01919 1.01618 1.21216 0.99307 0.95009 0.94708 1.20861 0.97168 1.02185 0.96001 1.18861 0.93742 0.93726 0.90517 1.67474 1.31206 1.22901 1.09154 0.90614 0.91275 0.90613 0.95460 0.95991 0.92400 0.73813 0.89630 0.89947 0.89722 0.89472 0.75465 0.82498 0.81060 0.82897 0.83105 0.83240 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.63 10.69 127.77 1.37 3.99 16 2 N -1.00 -38.99 3.23 -543.22 -1.75 -40.74 16 3 C 0.27 13.32 5.10 85.63 0.44 13.76 16 4 C -0.55 -30.88 9.38 25.60 0.24 -30.64 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.67 5.46 84.65 0.46 1.13 16 7 N -0.92 -53.72 13.29 21.45 0.28 -53.43 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 S 2.80 102.41 6.09 -56.49 -0.34 102.06 16 13 O -1.01 -46.64 16.99 -128.00 -2.17 -48.82 16 14 O -1.01 -38.88 16.34 -128.00 -2.09 -40.97 16 15 N -1.12 -26.75 6.05 -187.47 -1.13 -27.88 16 16 C 0.11 1.92 6.37 86.38 0.55 2.47 16 17 C 0.13 1.79 5.01 86.38 0.43 2.22 16 18 N -0.72 -12.34 5.72 -344.89 -1.97 -14.32 16 19 C 0.42 8.71 7.63 133.65 1.02 9.73 16 20 C -0.23 -3.69 9.23 22.29 0.21 -3.49 16 21 C -0.02 -0.28 9.88 22.48 0.22 -0.06 16 22 C -0.17 -3.12 5.74 -21.26 -0.12 -3.24 16 23 C -0.08 -0.99 9.77 22.31 0.22 -0.77 16 24 C -0.15 -1.70 9.96 22.05 0.22 -1.48 16 25 C -0.08 -1.11 9.94 22.03 0.22 -0.89 16 26 C -0.14 -2.74 9.98 22.34 0.22 -2.52 16 27 C 0.15 3.49 6.60 40.23 0.27 3.76 16 28 N -0.59 -14.55 10.37 -186.23 -1.93 -16.48 16 29 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 30 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 31 H 0.08 2.19 7.05 -2.39 -0.02 2.17 16 32 H 0.03 1.36 8.11 -2.38 -0.02 1.34 16 33 H 0.02 1.17 7.50 -2.39 -0.02 1.15 16 34 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 35 H 0.43 8.40 8.66 -96.75 -0.84 7.57 16 36 H 0.09 1.58 7.79 -2.39 -0.02 1.56 16 37 H 0.08 1.38 8.05 -2.38 -0.02 1.36 16 38 H 0.08 1.06 7.90 -2.39 -0.02 1.04 16 39 H 0.09 1.05 7.90 -2.39 -0.02 1.04 16 40 H 0.41 6.81 8.59 -92.71 -0.80 6.01 16 41 H 0.16 1.74 6.62 -2.91 -0.02 1.72 16 42 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 43 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.25 400.36 -3.74 -82.99 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.61 Total: 17.20 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.96 Total: -6.02 kcal Atomic # 7 Polarization: -146.35 SS G_CDS: -6.50 Total: -152.86 kcal Atomic # 8 Polarization: -85.52 SS G_CDS: -4.27 Total: -89.79 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 102.41 SS G_CDS: -0.34 Total: 102.06 kcal Total: -79.25 -3.74 -82.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070009260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.624 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds