Wall clock time and date at job start Tue Mar 31 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86798 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99259 * 3 2 1 5 5 H 1.48498 * 109.47403 * 29.99664 * 3 2 1 6 6 H 1.48511 * 109.47076 * 149.99653 * 3 2 1 7 7 C 1.39004 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00436 * 200.23968 * 7 2 1 9 9 N 1.36891 * 120.00113 * 20.24289 * 7 2 1 10 10 C 1.38208 * 125.62230 * 215.66803 * 9 7 2 11 11 C 1.46886 * 125.43624 * 0.03343 * 10 9 7 12 12 O 1.21664 * 119.99916 * 7.94322 * 11 10 9 13 13 N 1.34782 * 119.99978 * 187.93844 * 11 10 9 14 14 C 1.47420 * 125.64809 * 0.56317 * 13 11 10 15 15 C 1.54917 * 104.92848 * 155.79422 * 14 13 11 16 16 C 1.55444 * 101.44687 * 37.00410 * 15 14 13 17 17 C 1.47023 * 125.64576 * 180.53534 * 13 11 10 18 18 H 1.08998 * 109.88315 * 300.65654 * 17 13 11 19 19 C 1.53003 * 109.88230 * 61.66440 * 17 13 11 20 20 N 1.46495 * 109.47130 * 294.99847 * 19 17 13 21 21 C 1.34945 * 126.03591 * 124.71628 * 20 19 17 22 22 C 1.35323 * 107.74558 * 179.83623 * 21 20 19 23 23 C 1.39862 * 107.91737 * 0.42451 * 22 21 20 24 24 N 1.30840 * 108.20589 * 359.73564 * 23 22 21 25 25 C 1.36129 * 109.12662 * 179.77318 * 10 9 7 26 26 C 1.41700 * 107.74752 * 0.22847 * 25 10 9 27 27 C 1.40019 * 133.34881 * 180.02562 * 26 25 10 28 28 C 1.36571 * 119.83253 * 180.02562 * 27 26 25 29 29 C 1.38863 * 120.59906 * 359.91654 * 28 27 26 30 30 C 1.37846 * 120.63195 * 0.06589 * 29 28 27 31 31 C 1.37841 * 125.62002 * 35.84286 * 9 7 2 32 32 H 0.97005 * 120.00425 * 3.41139 * 1 2 3 33 33 H 1.09001 * 110.36350 * 274.68407 * 14 13 11 34 34 H 1.08990 * 110.36929 * 36.90003 * 14 13 11 35 35 H 1.08997 * 111.00268 * 155.13784 * 15 14 13 36 36 H 1.08997 * 111.00146 * 278.99206 * 15 14 13 37 37 H 1.09007 * 110.70635 * 206.14645 * 16 15 14 38 38 H 1.08999 * 110.86173 * 82.96584 * 16 15 14 39 39 H 1.09000 * 109.46777 * 54.99917 * 19 17 13 40 40 H 1.09003 * 109.46982 * 174.99815 * 19 17 13 41 41 H 1.08003 * 126.12974 * 0.02562 * 21 20 19 42 42 H 1.07998 * 126.03989 * 180.15770 * 22 21 20 43 43 H 1.08008 * 125.89629 * 179.71454 * 23 22 21 44 44 H 1.08002 * 126.12303 * 180.24761 * 25 10 9 45 45 H 1.08005 * 120.08176 * 359.95832 * 27 26 25 46 46 H 1.08004 * 119.70313 * 179.97438 * 28 27 26 47 47 H 1.08000 * 119.68117 * 180.02562 * 29 28 27 48 48 H 1.07994 * 120.09421 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5450 1.4403 0.7002 7 6 2.0085 -1.2038 0.0005 8 1 3.0385 -1.2326 0.3241 9 7 1.3875 -2.3529 -0.4091 10 6 1.5921 -3.6120 0.1227 11 6 2.5125 -3.9331 1.2216 12 8 3.0626 -3.0383 1.8355 13 7 2.7475 -5.2191 1.5498 14 6 2.1602 -6.3966 0.8851 15 6 3.1561 -7.5501 1.1635 16 6 3.6097 -7.2227 2.6138 17 6 3.6325 -5.6798 2.6296 18 1 4.6467 -5.3198 2.4567 19 6 3.1208 -5.1656 3.9768 20 7 3.2091 -3.7036 4.0069 21 6 2.1938 -2.8521 4.2623 22 6 2.6857 -1.5931 4.1994 23 6 4.0460 -1.6778 3.8854 24 7 4.3609 -2.9425 3.7699 25 6 0.8003 -4.5062 -0.5304 26 6 0.0692 -3.7968 -1.5154 27 6 -0.8807 -4.1810 -2.4697 28 6 -1.4230 -3.2451 -3.3035 29 6 -1.0423 -1.9127 -3.2133 30 6 -0.1093 -1.5103 -2.2818 31 6 0.4576 -2.4455 -1.4224 32 1 -0.4851 0.8386 -0.0500 33 1 1.1844 -6.6263 1.3130 34 1 2.0719 -6.2222 -0.1872 35 1 2.6561 -8.5176 1.1173 36 1 3.9986 -7.5141 0.4729 37 1 4.6043 -7.6251 2.8066 38 1 2.8930 -7.6054 3.3404 39 1 2.0828 -5.4698 4.1112 40 1 3.7286 -5.5830 4.7796 41 1 1.1724 -3.1264 4.4812 42 1 2.1258 -0.6834 4.3587 43 1 4.7201 -0.8433 3.7598 44 1 0.7398 -5.5663 -0.3329 45 1 -1.1830 -5.2150 -2.5469 46 1 -2.1553 -3.5438 -4.0390 47 1 -1.4810 -1.1849 -3.8798 48 1 0.1800 -0.4717 -2.2189 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070040787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:23 Heat of formation + Delta-G solvation = 159.201576 kcal Electronic energy + Delta-G solvation = -34449.193682 eV Core-core repulsion = 30280.451217 eV Total energy + Delta-G solvation = -4168.742465 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.76047 -40.22387 -39.09443 -36.88953 -35.65026 -33.78051 -33.08566 -31.55111 -30.50487 -29.66594 -28.94133 -28.81762 -27.73032 -25.48017 -24.77130 -23.76040 -22.00546 -21.23598 -20.66560 -20.29256 -19.96866 -19.75906 -18.62986 -17.65030 -16.83263 -16.36991 -16.18474 -15.59449 -15.17402 -14.77757 -14.54899 -14.26518 -14.06577 -13.78226 -13.51550 -13.25652 -13.08674 -13.01364 -12.85657 -12.69975 -12.62690 -12.34052 -12.22975 -12.04952 -11.88718 -11.72839 -11.49082 -11.27916 -11.20542 -11.18549 -10.89830 -10.77572 -10.65119 -10.41289 -10.21235 -9.89152 -9.70239 -9.02882 -8.93743 -8.71521 -8.57844 -8.04098 -7.64375 -7.12852 -6.77963 -6.49426 -4.29967 1.90786 2.68514 2.80970 3.08068 3.10356 3.14085 3.16473 3.24612 3.30906 3.76173 3.92496 4.29113 4.45280 4.51790 4.65264 4.82680 4.86157 5.00025 5.12173 5.15808 5.29833 5.31837 5.45965 5.48903 5.59570 5.66855 5.71927 5.79969 5.86260 5.89316 6.00001 6.02200 6.13557 6.17766 6.33673 6.37654 6.55608 6.59841 6.65513 6.80401 6.80887 6.95183 7.08490 7.15093 7.24501 7.48358 7.54040 7.62793 7.72762 7.76397 7.94521 8.05246 8.17641 8.49492 8.50859 8.85182 9.10302 9.40004 10.27827 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.005311 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.023932 B = 5270.918205 C = 7921.098612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.054 3.946 3 Si 0.924 3.076 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.225 5.225 10 C -0.017 4.017 11 C 0.589 3.411 12 O -0.490 6.490 13 N -0.617 5.617 14 C 0.090 3.910 15 C -0.133 4.133 16 C -0.125 4.125 17 C 0.132 3.868 18 H 0.085 0.915 19 C 0.130 3.870 20 N -0.355 5.355 21 C 0.060 3.940 22 C -0.251 4.251 23 C 0.056 3.944 24 N -0.271 5.271 25 C -0.230 4.230 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.156 4.156 29 C -0.158 4.158 30 C -0.046 4.046 31 C 0.078 3.922 32 H 0.279 0.721 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -11.574 4.542 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.158 4.158 3 Si 0.748 3.252 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.134 0.866 9 N 0.116 4.884 10 C -0.135 4.135 11 C 0.380 3.620 12 O -0.363 6.363 13 N -0.355 5.355 14 C -0.033 4.033 15 C -0.171 4.171 16 C -0.164 4.164 17 C 0.028 3.972 18 H 0.103 0.897 19 C 0.007 3.993 20 N -0.138 5.138 21 C -0.086 4.086 22 C -0.280 4.280 23 C -0.131 4.131 24 N -0.092 5.092 25 C -0.257 4.257 26 C -0.128 4.128 27 C -0.114 4.114 28 C -0.175 4.175 29 C -0.179 4.179 30 C -0.065 4.065 31 C -0.037 4.037 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.182 0.818 44 H 0.155 0.845 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.890 -11.459 4.849 13.037 hybrid contribution -0.820 1.458 0.038 1.673 sum 3.070 -10.001 4.887 11.547 Atomic orbital electron populations 1.70057 1.06449 1.29310 1.38956 1.25552 0.95224 1.00541 0.94494 0.85955 0.80249 0.80027 0.79001 1.19636 1.20297 1.18357 1.19977 0.97591 0.82949 1.44656 0.86614 1.39942 1.25496 1.04509 1.18470 1.19510 1.05563 0.87424 1.00971 1.16982 0.81383 0.80770 0.82909 1.90958 1.48952 1.44639 1.51741 1.48150 1.47721 1.05055 1.34561 1.22775 0.96009 0.84694 0.99838 1.22864 0.99665 0.98457 0.96139 1.22679 1.02592 0.93127 0.97970 1.21803 0.95533 0.93620 0.86293 0.89672 1.21986 1.02375 0.76870 0.98087 1.48029 1.06836 1.04752 1.54184 1.22000 0.93530 0.90833 1.02201 1.21101 0.95490 0.96577 1.14847 1.23290 0.95828 0.94253 0.99738 1.76923 1.07197 1.03706 1.21382 1.20891 1.03990 0.98116 1.02736 1.17969 1.01468 0.93165 1.00243 1.19990 0.97537 0.97811 0.96053 1.20246 1.02442 0.93613 1.01156 1.20521 1.00785 0.95599 1.00991 1.20145 0.95502 0.97878 0.93003 1.18106 0.98317 0.93996 0.93237 0.91024 0.91698 0.88505 0.89916 0.90582 0.89967 0.90445 0.89366 0.89926 0.83104 0.85204 0.81838 0.84497 0.88107 0.88151 0.87875 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.73 10.79 55.50 0.60 -21.13 16 2 C 0.05 1.39 4.36 -17.48 -0.08 1.32 16 3 Si 0.92 19.96 29.60 -169.99 -5.03 14.93 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.32 -8.74 8.82 -15.01 -0.13 -8.88 16 8 H 0.12 3.27 6.95 -52.48 -0.37 2.90 16 9 N -0.22 -5.95 2.85 -56.08 -0.16 -6.11 16 10 C -0.02 -0.40 6.73 -82.25 -0.55 -0.95 16 11 C 0.59 12.68 7.44 -12.76 -0.09 12.59 16 12 O -0.49 -11.52 7.96 5.22 0.04 -11.47 16 13 N -0.62 -10.03 3.06 -164.47 -0.50 -10.54 16 14 C 0.09 1.14 5.16 -2.53 -0.01 1.12 16 15 C -0.13 -1.20 7.11 -24.42 -0.17 -1.38 16 16 C -0.13 -1.08 6.49 -24.74 -0.16 -1.24 16 17 C 0.13 1.75 3.15 -66.95 -0.21 1.54 16 18 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 19 C 0.13 1.71 5.96 -4.04 -0.02 1.68 16 20 N -0.36 -6.18 2.10 -61.36 -0.13 -6.31 16 21 C 0.06 1.09 10.11 -17.22 -0.17 0.91 16 22 C -0.25 -4.83 10.31 -40.01 -0.41 -5.24 16 23 C 0.06 1.07 10.95 -17.37 -0.19 0.88 16 24 N -0.27 -5.29 10.83 30.62 0.33 -4.96 16 25 C -0.23 -4.95 9.11 -39.02 -0.36 -5.31 16 26 C -0.12 -2.88 6.16 -106.90 -0.66 -3.54 16 27 C -0.09 -1.93 10.06 -39.52 -0.40 -2.33 16 28 C -0.16 -3.05 9.97 -39.95 -0.40 -3.44 16 29 C -0.16 -3.33 10.02 -39.49 -0.40 -3.73 16 30 C -0.05 -1.11 8.51 -39.41 -0.34 -1.45 16 31 C 0.08 2.01 6.11 -83.83 -0.51 1.50 16 32 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.06 0.77 7.91 -51.93 -0.41 0.36 16 34 H 0.10 1.35 5.45 -51.93 -0.28 1.07 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.54 7.85 -51.93 -0.41 0.14 16 39 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.15 2.45 8.06 -52.48 -0.42 2.02 16 42 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.16 2.80 8.06 -52.48 -0.42 2.38 16 44 H 0.14 2.40 4.54 -52.49 -0.24 2.16 16 45 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 46 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 47 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 48 H 0.11 2.82 6.27 -52.49 -0.33 2.49 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -32.61 379.40 -10.64 -43.25 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.24 Total: 12.57 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -5.27 Total: -15.94 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.14 Total: -49.05 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.04 Total: -11.47 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.61 -10.64 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070040787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.454 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds