Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86798 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99259 * 3 2 1 5 5 H 1.48498 * 109.47403 * 29.99664 * 3 2 1 6 6 H 1.48511 * 109.47076 * 149.99653 * 3 2 1 7 7 C 1.39004 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00436 * 200.23968 * 7 2 1 9 9 N 1.36891 * 120.00113 * 20.24289 * 7 2 1 10 10 C 1.38208 * 125.62230 * 215.66803 * 9 7 2 11 11 C 1.46886 * 125.43624 * 0.03343 * 10 9 7 12 12 O 1.21664 * 119.99916 * 7.94322 * 11 10 9 13 13 N 1.34782 * 119.99978 * 187.93844 * 11 10 9 14 14 C 1.47420 * 125.64809 * 0.56317 * 13 11 10 15 15 C 1.54917 * 104.92848 * 155.79422 * 14 13 11 16 16 C 1.55444 * 101.44687 * 37.00410 * 15 14 13 17 17 C 1.47023 * 125.64576 * 180.53534 * 13 11 10 18 18 H 1.08998 * 109.88315 * 300.65654 * 17 13 11 19 19 C 1.53003 * 109.88230 * 61.66440 * 17 13 11 20 20 N 1.46495 * 109.47130 * 294.99847 * 19 17 13 21 21 C 1.34945 * 126.03591 * 124.71628 * 20 19 17 22 22 C 1.35323 * 107.74558 * 179.83623 * 21 20 19 23 23 C 1.39862 * 107.91737 * 0.42451 * 22 21 20 24 24 N 1.30840 * 108.20589 * 359.73564 * 23 22 21 25 25 C 1.36129 * 109.12662 * 179.77318 * 10 9 7 26 26 C 1.41700 * 107.74752 * 0.22847 * 25 10 9 27 27 C 1.40019 * 133.34881 * 180.02562 * 26 25 10 28 28 C 1.36571 * 119.83253 * 180.02562 * 27 26 25 29 29 C 1.38863 * 120.59906 * 359.91654 * 28 27 26 30 30 C 1.37846 * 120.63195 * 0.06589 * 29 28 27 31 31 C 1.37841 * 125.62002 * 35.84286 * 9 7 2 32 32 H 0.97005 * 120.00425 * 3.41139 * 1 2 3 33 33 H 1.09001 * 110.36350 * 274.68407 * 14 13 11 34 34 H 1.08990 * 110.36929 * 36.90003 * 14 13 11 35 35 H 1.08997 * 111.00268 * 155.13784 * 15 14 13 36 36 H 1.08997 * 111.00146 * 278.99206 * 15 14 13 37 37 H 1.09007 * 110.70635 * 206.14645 * 16 15 14 38 38 H 1.08999 * 110.86173 * 82.96584 * 16 15 14 39 39 H 1.09000 * 109.46777 * 54.99917 * 19 17 13 40 40 H 1.09003 * 109.46982 * 174.99815 * 19 17 13 41 41 H 1.08003 * 126.12974 * 0.02562 * 21 20 19 42 42 H 1.07998 * 126.03989 * 180.15770 * 22 21 20 43 43 H 1.08008 * 125.89629 * 179.71454 * 23 22 21 44 44 H 1.08002 * 126.12303 * 180.24761 * 25 10 9 45 45 H 1.08005 * 120.08176 * 359.95832 * 27 26 25 46 46 H 1.08004 * 119.70313 * 179.97438 * 28 27 26 47 47 H 1.08000 * 119.68117 * 180.02562 * 29 28 27 48 48 H 1.07994 * 120.09421 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5450 1.4403 0.7002 7 6 2.0085 -1.2038 0.0005 8 1 3.0385 -1.2326 0.3241 9 7 1.3875 -2.3529 -0.4091 10 6 1.5921 -3.6120 0.1227 11 6 2.5125 -3.9331 1.2216 12 8 3.0626 -3.0383 1.8355 13 7 2.7475 -5.2191 1.5498 14 6 2.1602 -6.3966 0.8851 15 6 3.1561 -7.5501 1.1635 16 6 3.6097 -7.2227 2.6138 17 6 3.6325 -5.6798 2.6296 18 1 4.6467 -5.3198 2.4567 19 6 3.1208 -5.1656 3.9768 20 7 3.2091 -3.7036 4.0069 21 6 2.1938 -2.8521 4.2623 22 6 2.6857 -1.5931 4.1994 23 6 4.0460 -1.6778 3.8854 24 7 4.3609 -2.9425 3.7699 25 6 0.8003 -4.5062 -0.5304 26 6 0.0692 -3.7968 -1.5154 27 6 -0.8807 -4.1810 -2.4697 28 6 -1.4230 -3.2451 -3.3035 29 6 -1.0423 -1.9127 -3.2133 30 6 -0.1093 -1.5103 -2.2818 31 6 0.4576 -2.4455 -1.4224 32 1 -0.4851 0.8386 -0.0500 33 1 1.1844 -6.6263 1.3130 34 1 2.0719 -6.2222 -0.1872 35 1 2.6561 -8.5176 1.1173 36 1 3.9986 -7.5141 0.4729 37 1 4.6043 -7.6251 2.8066 38 1 2.8930 -7.6054 3.3404 39 1 2.0828 -5.4698 4.1112 40 1 3.7286 -5.5830 4.7796 41 1 1.1724 -3.1264 4.4812 42 1 2.1258 -0.6834 4.3587 43 1 4.7201 -0.8433 3.7598 44 1 0.7398 -5.5663 -0.3329 45 1 -1.1830 -5.2150 -2.5469 46 1 -2.1553 -3.5438 -4.0390 47 1 -1.4810 -1.1849 -3.8798 48 1 0.1800 -0.4717 -2.2189 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070040787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = 141.688711 kcal Electronic energy + Delta-G solvation = -34449.953097 eV Core-core repulsion = 30280.451217 eV Total energy + Delta-G solvation = -4169.501880 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.28121 -41.76057 -40.41113 -38.32139 -37.30826 -35.55398 -34.36465 -32.88806 -32.11915 -30.98767 -30.65344 -30.15522 -29.31794 -26.86176 -26.37935 -25.19821 -23.35017 -22.64709 -22.01681 -21.67465 -21.41956 -21.36382 -20.08641 -19.34211 -18.11379 -17.71373 -17.55270 -17.28385 -16.86618 -16.46369 -16.12880 -15.62011 -15.44072 -15.08024 -14.91745 -14.76194 -14.58419 -14.42429 -14.36678 -14.17553 -13.79868 -13.75674 -13.55165 -13.45274 -13.39894 -13.29205 -13.02986 -12.91064 -12.59987 -12.35372 -12.24934 -12.18542 -11.98434 -11.77686 -11.62062 -11.33851 -11.30614 -10.86308 -10.55813 -10.34498 -10.08677 -9.39173 -9.06648 -8.94562 -8.57586 -8.27865 -6.27511 0.22048 1.10827 1.27598 1.28229 1.34676 1.40570 1.56238 1.86589 2.00068 2.16304 2.26282 2.56413 2.97577 3.12923 3.40309 3.55165 3.61070 3.74998 4.04890 4.07898 4.11607 4.21616 4.28136 4.31520 4.38586 4.43212 4.51413 4.56797 4.65429 4.74440 4.84051 4.89109 4.91997 4.98069 5.05797 5.08622 5.12104 5.16628 5.18219 5.25207 5.34206 5.37920 5.41455 5.48476 5.60633 5.79248 5.93469 5.99049 6.03396 6.29924 6.37117 6.44929 6.61640 6.64713 7.04769 7.06349 7.48297 7.57114 8.39396 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.005311 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.023932 B = 5270.918205 C = 7921.098612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.022 3.978 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.346 4.346 8 H 0.087 0.913 9 N -0.260 5.260 10 C -0.043 4.043 11 C 0.576 3.424 12 O -0.521 6.521 13 N -0.612 5.612 14 C 0.078 3.922 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.128 3.872 18 H 0.055 0.945 19 C 0.119 3.881 20 N -0.347 5.347 21 C 0.055 3.945 22 C -0.277 4.277 23 C 0.037 3.963 24 N -0.290 5.290 25 C -0.209 4.209 26 C -0.151 4.151 27 C -0.087 4.087 28 C -0.157 4.157 29 C -0.144 4.144 30 C -0.089 4.089 31 C 0.052 3.948 32 H 0.280 0.720 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.169 0.831 42 H 0.126 0.874 43 H 0.172 0.828 44 H 0.179 0.821 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.130 0.870 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -15.795 4.090 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.186 4.186 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.105 0.895 9 N 0.079 4.921 10 C -0.160 4.160 11 C 0.366 3.634 12 O -0.396 6.396 13 N -0.348 5.348 14 C -0.043 4.043 15 C -0.158 4.158 16 C -0.148 4.148 17 C 0.024 3.976 18 H 0.073 0.927 19 C -0.003 4.003 20 N -0.130 5.130 21 C -0.091 4.091 22 C -0.306 4.306 23 C -0.148 4.148 24 N -0.112 5.112 25 C -0.235 4.235 26 C -0.156 4.156 27 C -0.106 4.106 28 C -0.175 4.175 29 C -0.164 4.164 30 C -0.109 4.109 31 C -0.063 4.063 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.187 0.813 42 H 0.144 0.856 43 H 0.189 0.811 44 H 0.196 0.804 45 H 0.160 0.840 46 H 0.163 0.837 47 H 0.148 0.852 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.523 -15.749 4.399 16.545 hybrid contribution -0.457 2.510 0.063 2.552 sum 2.066 -13.239 4.462 14.122 Atomic orbital electron populations 1.70121 1.07437 1.29799 1.40770 1.26195 0.95837 1.02731 0.93883 0.85139 0.78758 0.76765 0.79166 1.18832 1.19191 1.19104 1.19689 0.96757 0.84484 1.46520 0.89515 1.40096 1.27072 1.05040 1.19910 1.20277 1.06489 0.87175 1.02026 1.17023 0.81298 0.82506 0.82600 1.90948 1.49932 1.46212 1.52496 1.48154 1.47326 1.04211 1.35116 1.23022 0.98001 0.84560 0.98745 1.22852 0.98610 0.98288 0.96043 1.22720 1.04840 0.88712 0.98480 1.22030 0.93222 0.97028 0.85275 0.92702 1.22451 1.04382 0.74420 0.99024 1.48321 1.05819 1.06258 1.52570 1.22275 0.94401 0.90824 1.01640 1.21250 0.95799 0.97305 1.16290 1.23495 0.96263 0.94777 1.00282 1.76812 1.08608 1.03922 1.21863 1.21442 1.01726 0.99622 1.00729 1.18497 1.02891 0.92363 1.01833 1.20471 0.95682 1.00074 0.94368 1.20725 1.02699 0.92481 1.01627 1.20956 0.98669 0.97363 0.99420 1.20201 0.98295 0.97011 0.95361 1.18668 0.98399 0.95745 0.93454 0.90969 0.89902 0.90037 0.86273 0.91163 0.87852 0.87509 0.87322 0.86813 0.81346 0.85592 0.81128 0.80368 0.84010 0.83703 0.85234 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.88 10.79 21.67 0.23 -47.65 16 2 C 0.02 1.21 4.36 84.95 0.37 1.58 16 3 Si 0.98 43.80 29.60 68.60 2.03 45.83 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.35 -20.22 8.82 84.09 0.74 -19.48 16 8 H 0.09 5.39 6.95 -2.91 -0.02 5.37 16 9 N -0.26 -14.53 2.85 -331.35 -0.94 -15.48 16 10 C -0.04 -2.12 6.73 39.91 0.27 -1.85 16 11 C 0.58 25.52 7.44 86.51 0.64 26.16 16 12 O -0.52 -25.79 7.96 -4.23 -0.03 -25.82 16 13 N -0.61 -19.21 3.06 -792.49 -2.43 -21.64 16 14 C 0.08 1.73 5.16 86.86 0.45 2.18 16 15 C -0.12 -1.61 7.11 32.09 0.23 -1.38 16 16 C -0.11 -1.37 6.49 31.88 0.21 -1.16 16 17 C 0.13 3.15 3.15 45.34 0.14 3.29 16 18 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 19 C 0.12 2.85 5.96 86.38 0.51 3.36 16 20 N -0.35 -12.14 2.10 -348.06 -0.73 -12.87 16 21 C 0.06 2.07 10.11 83.54 0.84 2.91 16 22 C -0.28 -11.36 10.31 21.99 0.23 -11.13 16 23 C 0.04 1.54 10.95 85.23 0.93 2.48 16 24 N -0.29 -11.78 10.83 -57.02 -0.62 -12.40 16 25 C -0.21 -8.78 9.11 22.63 0.21 -8.58 16 26 C -0.15 -6.91 6.16 -21.34 -0.13 -7.04 16 27 C -0.09 -3.26 10.06 22.31 0.22 -3.04 16 28 C -0.16 -5.58 9.97 22.03 0.22 -5.36 16 29 C -0.14 -5.88 10.02 22.33 0.22 -5.65 16 30 C -0.09 -4.45 8.51 22.38 0.19 -4.26 16 31 C 0.05 2.75 6.11 39.06 0.24 2.99 16 32 H 0.28 14.66 8.31 -92.70 -0.77 13.89 16 33 H 0.08 1.59 7.91 -2.39 -0.02 1.57 16 34 H 0.08 2.06 5.45 -2.39 -0.01 2.05 16 35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.11 0.81 7.85 -2.39 -0.02 0.79 16 39 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.17 5.50 8.06 -2.91 -0.02 5.47 16 42 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.17 6.40 8.06 -2.91 -0.02 6.37 16 44 H 0.18 5.72 4.54 -2.91 -0.01 5.71 16 45 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 46 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 47 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 48 H 0.09 4.79 6.27 -2.91 -0.02 4.77 16 Total: -1.00 -79.67 379.40 5.24 -74.43 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.99 Total: 39.58 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 6.74 Total: -23.98 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.49 Total: -110.04 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.03 Total: -25.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -79.67 5.24 -74.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070040787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.114 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds