Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86806 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47227 * 270.00105 * 3 2 1 5 5 H 1.48502 * 109.46874 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00199 * 3 2 1 7 7 C 1.39007 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99795 * 183.17778 * 7 2 1 9 9 N 1.36890 * 120.00084 * 3.17873 * 7 2 1 10 10 C 1.38211 * 125.61922 * 135.47907 * 9 7 2 11 11 C 1.46890 * 125.44013 * 359.95004 * 10 9 7 12 12 O 1.21673 * 119.99919 * 351.20029 * 11 10 9 13 13 N 1.34773 * 120.00054 * 171.19419 * 11 10 9 14 14 C 1.47428 * 125.64889 * 0.57536 * 13 11 10 15 15 C 1.54691 * 104.93841 * 204.07081 * 14 13 11 16 16 C 1.55151 * 101.68323 * 323.27821 * 15 14 13 17 17 C 1.47022 * 125.64779 * 180.88566 * 13 11 10 18 18 H 1.09000 * 109.88659 * 59.48174 * 17 13 11 19 19 C 1.53005 * 109.88219 * 298.47543 * 17 13 11 20 20 N 1.46496 * 109.47381 * 175.36006 * 19 17 13 21 21 C 1.34948 * 126.03956 * 125.20374 * 20 19 17 22 22 C 1.35310 * 107.75034 * 179.97438 * 21 20 19 23 23 C 1.39873 * 107.92053 * 0.02562 * 22 21 20 24 24 N 1.30842 * 108.19879 * 359.73829 * 23 22 21 25 25 C 1.36124 * 109.12687 * 179.97438 * 10 9 7 26 26 C 1.41705 * 107.74619 * 0.25510 * 25 10 9 27 27 C 1.40026 * 133.34341 * 180.45668 * 26 25 10 28 28 C 1.36582 * 119.82784 * 179.59947 * 27 26 25 29 29 C 1.38857 * 120.59898 * 359.70420 * 28 27 26 30 30 C 1.37846 * 120.63343 * 0.02942 * 29 28 27 31 31 C 1.37829 * 125.61977 * 315.44848 * 9 7 2 32 32 H 0.97003 * 120.00002 * 5.00458 * 1 2 3 33 33 H 1.08997 * 110.36486 * 323.00618 * 14 13 11 34 34 H 1.08999 * 110.36262 * 85.32914 * 14 13 11 35 35 H 1.09005 * 111.10026 * 205.10324 * 15 14 13 36 36 H 1.09002 * 110.81630 * 81.32802 * 15 14 13 37 37 H 1.09001 * 110.72507 * 276.97608 * 16 15 14 38 38 H 1.08997 * 110.72161 * 153.69799 * 16 15 14 39 39 H 1.09004 * 109.47099 * 295.36151 * 19 17 13 40 40 H 1.08998 * 109.46769 * 55.36138 * 19 17 13 41 41 H 1.08003 * 126.12159 * 359.97438 * 21 20 19 42 42 H 1.08001 * 126.04635 * 180.02562 * 22 21 20 43 43 H 1.08002 * 125.90182 * 179.97438 * 23 22 21 44 44 H 1.07997 * 126.12924 * 180.02562 * 25 10 9 45 45 H 1.07999 * 120.08414 * 359.30304 * 27 26 25 46 46 H 1.07995 * 119.69784 * 179.68648 * 28 27 26 47 47 H 1.07995 * 119.68219 * 180.02562 * 29 28 27 48 48 H 1.08000 * 120.09128 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0465 -1.4000 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0085 -1.2038 -0.0005 8 1 3.0873 -1.2045 0.0513 9 7 1.3257 -2.3884 -0.0668 10 6 1.6552 -3.4636 -0.8703 11 6 2.7965 -3.5189 -1.7934 12 8 3.4478 -2.5156 -2.0162 13 7 3.1222 -4.6808 -2.3934 14 6 2.4150 -5.9633 -2.2238 15 6 3.4641 -7.0460 -2.5703 16 6 4.2432 -6.3693 -3.7288 17 6 4.2455 -4.8810 -3.3206 18 1 5.1842 -4.6340 -2.8246 19 6 4.0630 -3.9987 -4.5573 20 7 5.2389 -4.1211 -5.4224 21 6 5.2321 -4.4643 -6.7275 22 6 6.5139 -4.4634 -7.1610 23 6 7.3323 -4.1080 -6.0837 24 7 6.5685 -3.8975 -5.0424 25 6 0.7530 -4.4631 -0.6701 26 6 -0.1875 -4.0104 0.2883 27 6 -1.3131 -4.5955 0.8811 28 6 -2.0368 -3.8946 1.8033 29 6 -1.6635 -2.6068 2.1644 30 6 -0.5562 -2.0118 1.5987 31 6 0.1966 -2.7057 0.6572 32 1 -0.4850 0.8369 -0.0733 33 1 2.0776 -6.0770 -1.1936 34 1 1.5700 -6.0240 -2.9096 35 1 2.9834 -7.9647 -2.9068 36 1 4.1179 -7.2382 -1.7195 37 1 3.7230 -6.5085 -4.6765 38 1 5.2610 -6.7551 -3.7861 39 1 3.1753 -4.3178 -5.1035 40 1 3.9458 -2.9600 -4.2484 41 1 4.3598 -4.6978 -7.3199 42 1 6.8465 -4.6959 -8.1618 43 1 8.4083 -4.0188 -6.1083 44 1 0.7518 -5.4268 -1.1574 45 1 -1.6109 -5.5965 0.6063 46 1 -2.9075 -4.3460 2.2554 47 1 -2.2463 -2.0663 2.8955 48 1 -0.2740 -1.0096 1.8858 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070040788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = 130.762822 kcal Electronic energy + Delta-G solvation = -32818.886377 eV Core-core repulsion = 28648.910715 eV Total energy + Delta-G solvation = -4169.975662 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.22105 -40.58689 -39.40064 -37.06713 -35.72890 -33.96460 -33.40921 -31.59768 -30.62207 -30.27900 -29.37697 -28.95477 -27.72608 -25.82318 -24.84092 -23.90747 -22.04094 -21.50032 -21.10201 -20.88294 -20.19578 -19.85421 -18.83446 -17.67683 -17.47419 -16.26937 -16.05801 -15.59538 -15.42872 -15.04803 -14.80440 -14.50474 -14.24078 -14.15555 -13.78574 -13.67716 -13.36407 -13.29464 -13.04463 -12.88121 -12.83694 -12.69105 -12.49344 -12.36694 -12.02790 -11.83632 -11.66970 -11.44887 -11.14688 -11.08232 -10.94658 -10.83168 -10.67541 -10.58672 -10.42458 -10.18888 -9.70039 -9.47558 -9.25671 -9.06700 -8.69886 -8.57710 -8.36074 -7.13345 -6.78636 -6.50018 -4.45837 1.83529 1.90687 2.40164 2.81404 2.82786 3.05444 3.07870 3.11577 3.15873 3.22608 3.89515 4.18349 4.34122 4.42082 4.55325 4.72659 4.77572 4.78226 4.83890 5.01900 5.08028 5.13424 5.23569 5.38115 5.45239 5.54037 5.64375 5.66897 5.73283 5.76866 5.81851 5.87157 5.93605 5.98033 6.02095 6.11390 6.15176 6.33789 6.47088 6.62002 6.64884 6.74975 6.89925 6.99244 7.06393 7.17112 7.21692 7.52375 7.62440 7.71093 7.74275 7.79923 8.01056 8.11435 8.48773 8.67783 8.91072 9.34140 10.27758 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.003270 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.152132 B = 8561.764188 C =10783.168355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.050 3.950 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.327 4.327 8 H 0.110 0.890 9 N -0.237 5.237 10 C -0.018 4.018 11 C 0.602 3.398 12 O -0.522 6.522 13 N -0.614 5.614 14 C 0.088 3.912 15 C -0.134 4.134 16 C -0.123 4.123 17 C 0.137 3.863 18 H 0.088 0.912 19 C 0.119 3.881 20 N -0.359 5.359 21 C 0.052 3.948 22 C -0.280 4.280 23 C 0.036 3.964 24 N -0.287 5.287 25 C -0.220 4.220 26 C -0.128 4.128 27 C -0.099 4.099 28 C -0.152 4.152 29 C -0.162 4.162 30 C -0.033 4.033 31 C 0.093 3.907 32 H 0.280 0.720 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.170 0.830 42 H 0.144 0.856 43 H 0.180 0.820 44 H 0.141 0.859 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -12.377 -8.850 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.160 4.160 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.128 0.872 9 N 0.103 4.897 10 C -0.136 4.136 11 C 0.394 3.606 12 O -0.398 6.398 13 N -0.350 5.350 14 C -0.034 4.034 15 C -0.172 4.172 16 C -0.161 4.161 17 C 0.032 3.968 18 H 0.106 0.894 19 C -0.003 4.003 20 N -0.141 5.141 21 C -0.095 4.095 22 C -0.310 4.310 23 C -0.150 4.150 24 N -0.109 5.109 25 C -0.247 4.247 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.171 4.171 29 C -0.183 4.183 30 C -0.052 4.052 31 C -0.021 4.021 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.188 0.812 42 H 0.162 0.838 43 H 0.197 0.803 44 H 0.158 0.842 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.907 -10.877 -7.527 14.108 hybrid contribution 0.141 0.675 -1.245 1.423 sum 5.048 -10.202 -8.773 14.371 Atomic orbital electron populations 1.69974 1.06192 1.29212 1.41223 1.25704 0.95704 1.00569 0.94061 0.85753 0.79488 0.79468 0.79172 1.19555 1.20263 1.18702 1.19882 0.92824 0.80933 1.51902 0.87217 1.39878 1.17823 1.09396 1.22645 1.19444 1.00337 0.92756 1.01013 1.17006 0.83057 0.81191 0.79333 1.90810 1.52728 1.33161 1.63070 1.48138 1.31108 1.09468 1.46330 1.22834 0.94864 0.82163 1.03567 1.22805 0.97998 0.97944 0.98480 1.22663 1.01511 0.93198 0.98760 1.21625 0.91644 0.94465 0.89040 0.89364 1.22249 0.83273 1.03897 0.90906 1.48676 1.05972 1.51633 1.07850 1.22565 0.99807 1.01113 0.86037 1.21451 0.92013 1.16353 1.01150 1.23882 1.00164 0.99977 0.90930 1.77453 0.86884 1.22835 1.23753 1.20955 0.98205 0.99513 1.06030 1.18019 0.98300 0.94839 1.02077 1.19973 0.95281 0.98472 0.98084 1.20279 1.00407 0.95708 1.00748 1.20570 0.98620 0.95922 1.03201 1.20326 0.93091 0.98209 0.93595 1.18289 0.92650 0.93570 0.97611 0.90927 0.87932 0.91213 0.89762 0.90456 0.90834 0.90256 0.88643 0.87834 0.81248 0.83829 0.80323 0.84161 0.88045 0.88144 0.87835 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.08 9.79 55.50 0.54 -21.53 16 2 C 0.05 1.29 5.13 -17.47 -0.09 1.20 16 3 Si 0.94 20.44 29.56 -169.99 -5.02 15.42 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.33 -8.92 8.57 -15.01 -0.13 -9.05 16 8 H 0.11 3.05 7.32 -52.49 -0.38 2.67 16 9 N -0.24 -6.27 2.84 -56.08 -0.16 -6.43 16 10 C -0.02 -0.43 6.73 -82.25 -0.55 -0.99 16 11 C 0.60 13.02 7.59 -12.76 -0.10 12.92 16 12 O -0.52 -12.98 14.19 5.21 0.07 -12.90 16 13 N -0.61 -9.95 3.07 -164.60 -0.50 -10.46 16 14 C 0.09 1.09 5.18 -2.64 -0.01 1.08 16 15 C -0.13 -1.26 7.07 -24.70 -0.17 -1.44 16 16 C -0.12 -1.26 6.29 -24.90 -0.16 -1.41 16 17 C 0.14 1.93 3.00 -66.95 -0.20 1.73 16 18 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 19 C 0.12 1.66 5.90 -4.04 -0.02 1.64 16 20 N -0.36 -4.80 3.47 -61.36 -0.21 -5.01 16 21 C 0.05 0.55 11.45 -17.22 -0.20 0.35 16 22 C -0.28 -2.87 10.80 -40.01 -0.43 -3.30 16 23 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 24 N -0.29 -4.29 12.34 30.63 0.38 -3.91 16 25 C -0.22 -4.57 9.11 -39.02 -0.36 -4.93 16 26 C -0.13 -2.91 6.16 -106.89 -0.66 -3.57 16 27 C -0.10 -1.97 10.06 -39.51 -0.40 -2.37 16 28 C -0.15 -2.93 9.97 -39.95 -0.40 -3.33 16 29 C -0.16 -3.37 10.02 -39.50 -0.40 -3.77 16 30 C -0.03 -0.79 8.40 -39.41 -0.33 -1.12 16 31 C 0.09 2.38 6.06 -83.84 -0.51 1.87 16 32 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.10 1.35 5.38 -51.93 -0.28 1.07 16 34 H 0.07 0.78 7.95 -51.93 -0.41 0.36 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.10 7.97 -51.93 -0.41 0.68 16 40 H 0.10 1.83 6.68 -51.93 -0.35 1.49 16 41 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.14 2.32 4.55 -52.49 -0.24 2.08 16 45 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 48 H 0.12 3.12 6.34 -52.49 -0.33 2.79 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -32.62 389.22 -10.53 -43.15 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.17 Total: 10.08 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -5.32 Total: -14.27 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.04 Total: -47.34 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.62 -10.53 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070040788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.911 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds