Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86806 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47227 * 270.00105 * 3 2 1 5 5 H 1.48502 * 109.46874 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00199 * 3 2 1 7 7 C 1.39007 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99795 * 183.17778 * 7 2 1 9 9 N 1.36890 * 120.00084 * 3.17873 * 7 2 1 10 10 C 1.38211 * 125.61922 * 135.47907 * 9 7 2 11 11 C 1.46890 * 125.44013 * 359.95004 * 10 9 7 12 12 O 1.21673 * 119.99919 * 351.20029 * 11 10 9 13 13 N 1.34773 * 120.00054 * 171.19419 * 11 10 9 14 14 C 1.47428 * 125.64889 * 0.57536 * 13 11 10 15 15 C 1.54691 * 104.93841 * 204.07081 * 14 13 11 16 16 C 1.55151 * 101.68323 * 323.27821 * 15 14 13 17 17 C 1.47022 * 125.64779 * 180.88566 * 13 11 10 18 18 H 1.09000 * 109.88659 * 59.48174 * 17 13 11 19 19 C 1.53005 * 109.88219 * 298.47543 * 17 13 11 20 20 N 1.46496 * 109.47381 * 175.36006 * 19 17 13 21 21 C 1.34948 * 126.03956 * 125.20374 * 20 19 17 22 22 C 1.35310 * 107.75034 * 179.97438 * 21 20 19 23 23 C 1.39873 * 107.92053 * 0.02562 * 22 21 20 24 24 N 1.30842 * 108.19879 * 359.73829 * 23 22 21 25 25 C 1.36124 * 109.12687 * 179.97438 * 10 9 7 26 26 C 1.41705 * 107.74619 * 0.25510 * 25 10 9 27 27 C 1.40026 * 133.34341 * 180.45668 * 26 25 10 28 28 C 1.36582 * 119.82784 * 179.59947 * 27 26 25 29 29 C 1.38857 * 120.59898 * 359.70420 * 28 27 26 30 30 C 1.37846 * 120.63343 * 0.02942 * 29 28 27 31 31 C 1.37829 * 125.61977 * 315.44848 * 9 7 2 32 32 H 0.97003 * 120.00002 * 5.00458 * 1 2 3 33 33 H 1.08997 * 110.36486 * 323.00618 * 14 13 11 34 34 H 1.08999 * 110.36262 * 85.32914 * 14 13 11 35 35 H 1.09005 * 111.10026 * 205.10324 * 15 14 13 36 36 H 1.09002 * 110.81630 * 81.32802 * 15 14 13 37 37 H 1.09001 * 110.72507 * 276.97608 * 16 15 14 38 38 H 1.08997 * 110.72161 * 153.69799 * 16 15 14 39 39 H 1.09004 * 109.47099 * 295.36151 * 19 17 13 40 40 H 1.08998 * 109.46769 * 55.36138 * 19 17 13 41 41 H 1.08003 * 126.12159 * 359.97438 * 21 20 19 42 42 H 1.08001 * 126.04635 * 180.02562 * 22 21 20 43 43 H 1.08002 * 125.90182 * 179.97438 * 23 22 21 44 44 H 1.07997 * 126.12924 * 180.02562 * 25 10 9 45 45 H 1.07999 * 120.08414 * 359.30304 * 27 26 25 46 46 H 1.07995 * 119.69784 * 179.68648 * 28 27 26 47 47 H 1.07995 * 119.68219 * 180.02562 * 29 28 27 48 48 H 1.08000 * 120.09128 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0465 -1.4000 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0085 -1.2038 -0.0005 8 1 3.0873 -1.2045 0.0513 9 7 1.3257 -2.3884 -0.0668 10 6 1.6552 -3.4636 -0.8703 11 6 2.7965 -3.5189 -1.7934 12 8 3.4478 -2.5156 -2.0162 13 7 3.1222 -4.6808 -2.3934 14 6 2.4150 -5.9633 -2.2238 15 6 3.4641 -7.0460 -2.5703 16 6 4.2432 -6.3693 -3.7288 17 6 4.2455 -4.8810 -3.3206 18 1 5.1842 -4.6340 -2.8246 19 6 4.0630 -3.9987 -4.5573 20 7 5.2389 -4.1211 -5.4224 21 6 5.2321 -4.4643 -6.7275 22 6 6.5139 -4.4634 -7.1610 23 6 7.3323 -4.1080 -6.0837 24 7 6.5685 -3.8975 -5.0424 25 6 0.7530 -4.4631 -0.6701 26 6 -0.1875 -4.0104 0.2883 27 6 -1.3131 -4.5955 0.8811 28 6 -2.0368 -3.8946 1.8033 29 6 -1.6635 -2.6068 2.1644 30 6 -0.5562 -2.0118 1.5987 31 6 0.1966 -2.7057 0.6572 32 1 -0.4850 0.8369 -0.0733 33 1 2.0776 -6.0770 -1.1936 34 1 1.5700 -6.0240 -2.9096 35 1 2.9834 -7.9647 -2.9068 36 1 4.1179 -7.2382 -1.7195 37 1 3.7230 -6.5085 -4.6765 38 1 5.2610 -6.7551 -3.7861 39 1 3.1753 -4.3178 -5.1035 40 1 3.9458 -2.9600 -4.2484 41 1 4.3598 -4.6978 -7.3199 42 1 6.8465 -4.6959 -8.1618 43 1 8.4083 -4.0188 -6.1083 44 1 0.7518 -5.4268 -1.1574 45 1 -1.6109 -5.5965 0.6063 46 1 -2.9075 -4.3460 2.2554 47 1 -2.2463 -2.0663 2.8955 48 1 -0.2740 -1.0096 1.8858 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070040788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = 112.185376 kcal Electronic energy + Delta-G solvation = -32819.691955 eV Core-core repulsion = 28648.910715 eV Total energy + Delta-G solvation = -4170.781240 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.35590 -42.02999 -40.77041 -38.53389 -37.40099 -35.61657 -34.65826 -32.93121 -32.22795 -31.26328 -30.65851 -30.42110 -29.26539 -26.98888 -26.60373 -25.31347 -23.39609 -22.65157 -22.30815 -21.93045 -21.59104 -21.30750 -20.27356 -19.40484 -18.44456 -17.80904 -17.44965 -17.11512 -16.81906 -16.47898 -16.36620 -16.00904 -15.73574 -15.18716 -14.98382 -14.88328 -14.74207 -14.59670 -14.49384 -14.42069 -14.09827 -13.84103 -13.71491 -13.56362 -13.43418 -13.27670 -13.23016 -12.98634 -12.86715 -12.34853 -12.25985 -12.12119 -11.96189 -11.82698 -11.73458 -11.49983 -11.34895 -11.00440 -10.87895 -10.45519 -10.32668 -9.82663 -9.45924 -8.93232 -8.59522 -8.28115 -6.44585 0.16760 1.01920 1.13073 1.23232 1.32134 1.35552 1.37680 1.44699 1.90917 2.00004 2.10595 2.47115 2.84372 3.03716 3.37190 3.41331 3.45578 3.62327 3.87386 3.93985 4.02215 4.09441 4.18019 4.27407 4.33105 4.44795 4.47406 4.50707 4.62717 4.72390 4.76933 4.81512 4.85398 4.90668 4.91871 4.96575 5.04025 5.08811 5.10932 5.17829 5.22680 5.28175 5.37477 5.44483 5.51226 5.76355 5.78720 5.95319 6.03522 6.12932 6.28131 6.30311 6.47235 6.61632 6.81969 6.93796 7.22592 7.47115 8.36719 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.003270 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.152132 B = 8561.764188 C =10783.168355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.014 3.986 3 Si 0.993 3.007 4 H -0.276 1.276 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.355 4.355 8 H 0.082 0.918 9 N -0.274 5.274 10 C -0.049 4.049 11 C 0.594 3.406 12 O -0.573 6.573 13 N -0.604 5.604 14 C 0.076 3.924 15 C -0.119 4.119 16 C -0.108 4.108 17 C 0.135 3.865 18 H 0.051 0.949 19 C 0.128 3.872 20 N -0.373 5.373 21 C 0.054 3.946 22 C -0.280 4.280 23 C 0.035 3.965 24 N -0.348 5.348 25 C -0.189 4.189 26 C -0.154 4.154 27 C -0.088 4.088 28 C -0.154 4.154 29 C -0.146 4.146 30 C -0.078 4.078 31 C 0.066 3.934 32 H 0.281 0.719 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.052 0.948 41 H 0.207 0.793 42 H 0.174 0.826 43 H 0.203 0.797 44 H 0.189 0.811 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -16.588 -10.616 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.193 4.193 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.181 1.181 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.100 0.900 9 N 0.063 4.937 10 C -0.164 4.164 11 C 0.386 3.614 12 O -0.453 6.453 13 N -0.338 5.338 14 C -0.045 4.045 15 C -0.157 4.157 16 C -0.146 4.146 17 C 0.031 3.969 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.156 5.156 21 C -0.092 4.092 22 C -0.309 4.309 23 C -0.151 4.151 24 N -0.170 5.170 25 C -0.215 4.215 26 C -0.158 4.158 27 C -0.106 4.106 28 C -0.173 4.173 29 C -0.167 4.167 30 C -0.098 4.098 31 C -0.048 4.048 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.071 0.929 41 H 0.224 0.776 42 H 0.191 0.809 43 H 0.219 0.781 44 H 0.206 0.794 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.147 0.853 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.053 -15.156 -9.311 18.048 hybrid contribution 0.706 1.770 -0.716 2.036 sum 3.759 -13.386 -10.027 17.142 Atomic orbital electron populations 1.70063 1.06952 1.29703 1.42397 1.26389 0.96498 1.02835 0.93598 0.84966 0.78459 0.76424 0.78741 1.20152 1.18103 1.19004 1.19677 0.91916 0.82619 1.54118 0.90017 1.40046 1.19034 1.09953 1.24709 1.20088 1.01747 0.92813 1.01788 1.17053 0.82625 0.82219 0.79503 1.90772 1.54282 1.35535 1.64754 1.48119 1.31397 1.09195 1.45107 1.23173 0.96510 0.80875 1.03952 1.22806 0.96840 0.98120 0.97923 1.22625 1.02349 0.89429 1.00189 1.21730 0.89160 0.97637 0.88349 0.93109 1.21997 0.84906 1.00987 0.91577 1.48602 1.05183 1.52953 1.08813 1.23265 1.01447 0.99583 0.84866 1.21855 0.91584 1.15493 1.01937 1.24448 1.01360 0.98482 0.90802 1.77427 0.88159 1.25375 1.26050 1.21537 0.95812 1.00139 1.04054 1.18538 0.99996 0.94132 1.03146 1.20475 0.93344 1.00119 0.96699 1.20761 1.01501 0.94723 1.00311 1.20988 0.96835 0.96801 1.02029 1.20334 0.95577 0.97956 0.95888 1.18851 0.92593 0.95300 0.98051 0.90830 0.88570 0.88600 0.85654 0.90909 0.88237 0.89961 0.85663 0.92930 0.77592 0.80853 0.78057 0.79422 0.83602 0.83625 0.85313 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.41 9.79 21.67 0.21 -48.20 16 2 C 0.01 0.77 5.13 84.95 0.44 1.20 16 3 Si 0.99 45.10 29.56 68.60 2.03 47.13 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.36 -21.23 8.57 84.09 0.72 -20.51 16 8 H 0.08 5.12 7.32 -2.91 -0.02 5.10 16 9 N -0.27 -15.55 2.84 -331.35 -0.94 -16.50 16 10 C -0.05 -2.42 6.73 39.91 0.27 -2.15 16 11 C 0.59 27.43 7.59 86.51 0.66 28.08 16 12 O -0.57 -31.53 14.19 -4.26 -0.06 -31.59 16 13 N -0.60 -19.83 3.07 -792.89 -2.43 -22.27 16 14 C 0.08 1.65 5.18 86.78 0.45 2.10 16 15 C -0.12 -1.77 7.07 31.91 0.23 -1.54 16 16 C -0.11 -1.90 6.29 31.78 0.20 -1.70 16 17 C 0.14 3.87 3.00 45.34 0.14 4.01 16 18 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 19 C 0.13 3.68 5.90 86.38 0.51 4.19 16 20 N -0.37 -9.94 3.47 -348.06 -1.21 -11.15 16 21 C 0.05 1.02 11.45 83.54 0.96 1.97 16 22 C -0.28 -5.06 10.80 21.99 0.24 -4.82 16 23 C 0.03 0.79 12.03 85.24 1.03 1.81 16 24 N -0.35 -10.72 12.34 -57.02 -0.70 -11.43 16 25 C -0.19 -7.66 9.11 22.63 0.21 -7.45 16 26 C -0.15 -6.84 6.16 -21.33 -0.13 -6.97 16 27 C -0.09 -3.16 10.06 22.32 0.22 -2.93 16 28 C -0.15 -5.35 9.97 22.03 0.22 -5.14 16 29 C -0.15 -5.90 10.02 22.33 0.22 -5.68 16 30 C -0.08 -3.89 8.40 22.38 0.19 -3.70 16 31 C 0.07 3.50 6.06 39.06 0.24 3.74 16 32 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.10 2.24 5.38 -2.39 -0.01 2.23 16 34 H 0.10 1.68 7.95 -2.39 -0.02 1.66 16 35 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.29 7.78 -2.39 -0.02 1.28 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.13 2.71 7.97 -2.38 -0.02 2.69 16 40 H 0.05 2.05 6.68 -2.39 -0.02 2.04 16 41 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.19 5.53 4.55 -2.91 -0.01 5.52 16 45 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 46 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 47 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 48 H 0.10 5.31 6.34 -2.91 -0.02 5.29 16 Total: -1.00 -83.04 389.22 4.88 -78.16 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.99 Total: 31.33 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 6.99 Total: -15.49 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -5.07 Total: -109.54 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.06 Total: -31.59 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.04 4.88 -78.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070040788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.349 kcal (2) G-P(sol) polarization free energy of solvation -83.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds