Wall clock time and date at job start Tue Mar 31 2020 07:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46832 * 198.71137 * 3 2 1 5 5 C 1.36904 * 119.99501 * 271.67580 * 4 3 2 6 6 H 1.08001 * 119.99623 * 193.73995 * 5 4 3 7 7 C 1.39024 * 120.00089 * 13.73489 * 5 4 3 8 8 N 1.31377 * 119.99999 * 14.46999 * 7 5 4 9 9 Si 1.86803 * 119.99889 * 194.47202 * 7 5 4 10 10 H 1.48502 * 109.47193 * 59.99897 * 9 7 5 11 11 H 1.48495 * 109.47102 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47110 * 300.00186 * 9 7 5 13 13 C 1.34767 * 120.00408 * 91.67863 * 4 3 2 14 14 O 1.21625 * 120.00268 * 184.65946 * 13 4 3 15 15 C 1.47504 * 120.00125 * 4.65471 * 13 4 3 16 16 C 1.39774 * 120.10146 * 128.26220 * 15 13 4 17 17 C 1.37774 * 119.94855 * 180.08272 * 16 15 13 18 18 Br 1.89098 * 119.86996 * 180.02562 * 17 16 15 19 19 C 1.39101 * 120.25976 * 0.02562 * 17 16 15 20 20 C 1.39240 * 120.05281 * 359.84753 * 19 17 16 21 21 C 1.38293 * 119.97437 * 0.19758 * 20 19 17 22 22 O 1.36153 * 120.75970 * 180.21221 * 20 19 17 23 23 C 1.43166 * 116.70103 * 342.75441 * 22 20 19 24 24 C 1.53468 * 108.23181 * 46.21070 * 23 22 20 25 25 O 1.35994 * 119.23210 * 179.64964 * 19 17 16 26 26 H 1.08998 * 109.47544 * 78.70570 * 3 2 1 27 27 H 1.08999 * 109.46850 * 318.70255 * 3 2 1 28 28 H 0.97001 * 120.00067 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.02609 * 0.06373 * 16 15 13 30 30 H 1.07996 * 120.01759 * 179.90414 * 21 20 19 31 31 H 1.08996 * 109.71374 * 165.89716 * 23 22 20 32 32 H 1.08996 * 109.71241 * 286.52837 * 23 22 20 33 33 H 1.08997 * 109.70857 * 180.51189 * 24 23 22 34 34 H 1.09003 * 109.74994 * 59.90783 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3091 0.4431 5 6 3.2907 2.3115 -0.4687 6 1 3.8515 3.1919 -0.1916 7 6 2.7668 2.1961 -1.7513 8 7 1.8586 1.2829 -2.0102 9 14 3.3545 3.3396 -3.1066 10 1 4.8169 3.1681 -3.2995 11 1 2.6463 3.0140 -4.3705 12 1 3.0669 4.7461 -2.7268 13 6 3.3525 1.5260 1.7482 14 8 3.6757 2.6352 2.1283 15 6 3.2413 0.4182 2.7158 16 6 4.2989 0.1386 3.5858 17 6 4.1924 -0.8979 4.4871 18 35 5.6243 -1.2738 5.6636 19 6 3.0357 -1.6690 4.5351 20 6 1.9778 -1.3936 3.6727 21 6 2.0787 -0.3552 2.7650 22 8 0.8373 -2.1364 3.7103 23 6 0.9162 -3.4033 4.3724 24 6 1.6480 -3.2030 5.7065 25 8 2.9558 -2.6916 5.4281 26 1 2.9715 -0.2004 -1.0077 27 1 2.9717 -0.7713 0.6782 28 1 1.4928 1.2026 -2.9050 29 1 5.1990 0.7344 3.5513 30 1 1.2592 -0.1419 2.0948 31 1 -0.0879 -3.7846 4.5575 32 1 1.4693 -4.1085 3.7521 33 1 1.7296 -4.1568 6.2277 34 1 1.0993 -2.4923 6.3245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071184980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:53 Heat of formation + Delta-G solvation = -19.361344 kcal Electronic energy + Delta-G solvation = -24723.916235 eV Core-core repulsion = 20863.466652 eV Total energy + Delta-G solvation = -3860.449583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 366.005 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36904 -39.36484 -37.39970 -37.14424 -35.89027 -34.35186 -32.41259 -31.72747 -31.27201 -29.17281 -28.66353 -27.51911 -25.66518 -24.52774 -22.75465 -21.61265 -19.75038 -18.63274 -18.10160 -17.65761 -17.03618 -16.39099 -16.29708 -15.51211 -15.18660 -14.91861 -14.51948 -14.44272 -14.28423 -14.00840 -13.71554 -13.41785 -12.98292 -12.86881 -12.41857 -12.03858 -11.87136 -11.65336 -11.57976 -11.33887 -11.22697 -11.18707 -10.66871 -10.63583 -10.49479 -10.44578 -10.24056 -10.21319 -9.38269 -8.87550 -8.46879 -8.23143 -8.08190 -6.60100 -4.11318 0.95084 1.18892 1.61001 2.79033 3.00200 3.10123 3.16594 3.18977 3.34763 3.66564 3.78054 3.99733 4.04941 4.07280 4.54565 4.61320 4.62573 4.72845 4.82649 5.00244 5.10763 5.22823 5.26354 5.33459 5.43136 5.62543 5.84060 5.95151 6.06948 6.42704 6.44471 6.54338 6.70511 7.24664 7.34442 7.72787 8.15250 8.75926 8.85688 9.04416 9.57228 10.42752 Molecular weight = 366.00amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.003758 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.741857 B = 7449.630950 C = 9085.243906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.254 3.746 3 C 0.217 3.783 4 N -0.428 5.428 5 C -0.306 4.306 6 H 0.114 0.886 7 C 0.031 3.969 8 N -0.881 5.881 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.488 3.512 14 O -0.564 6.564 15 C -0.085 4.085 16 C -0.046 4.046 17 C -0.091 4.091 18 Br -0.035 7.035 19 C 0.079 3.921 20 C 0.055 3.945 21 C -0.082 4.082 22 O -0.299 6.299 23 C 0.019 3.981 24 C 0.019 3.981 25 O -0.294 6.294 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.278 0.722 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -12.884 12.614 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.063 4.063 3 C 0.090 3.910 4 N -0.146 5.146 5 C -0.433 4.433 6 H 0.131 0.869 7 C -0.172 4.172 8 N -0.520 5.520 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.276 3.724 14 O -0.447 6.447 15 C -0.089 4.089 16 C -0.067 4.067 17 C -0.171 4.171 18 Br 0.050 6.950 19 C 0.031 3.969 20 C 0.009 3.991 21 C -0.102 4.102 22 O -0.213 6.213 23 C -0.057 4.057 24 C -0.056 4.056 25 O -0.207 6.207 26 H 0.150 0.850 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.332 -12.562 13.051 18.419 hybrid contribution -0.069 0.328 -1.009 1.063 sum 3.264 -12.234 12.043 17.474 Atomic orbital electron populations 1.80922 1.13348 1.09079 1.12051 1.28930 0.95151 0.92112 0.90120 1.18939 0.82050 0.86210 1.03784 1.43567 1.55277 1.10568 1.05188 1.19821 1.32556 1.00584 0.90365 0.86871 1.25368 0.94709 0.98015 0.99117 1.69642 1.24882 1.34616 1.22863 0.85778 0.78936 0.79962 0.78865 1.19480 1.20830 1.19650 1.17607 0.85710 0.87392 0.81647 1.90684 1.52836 1.23636 1.77554 1.19963 0.93546 0.96778 0.98662 1.20944 0.99284 0.94220 0.92230 1.20799 0.93826 1.00229 1.02244 1.96654 1.42070 1.95093 1.61178 1.18496 0.94575 0.91789 0.92039 1.18543 0.87168 0.96229 0.97135 1.21060 0.98776 0.93494 0.96919 1.86424 1.30075 1.30153 1.74650 1.23658 1.03900 0.84721 0.93406 1.23682 0.83159 1.01570 0.97208 1.86363 1.29496 1.46904 1.57981 0.85007 0.90017 0.91105 0.83306 0.83610 0.85983 0.90226 0.85896 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.25 18.44 42.15 0.78 -10.47 16 2 C 0.25 5.65 10.37 -20.76 -0.22 5.44 16 3 C 0.22 4.40 4.75 -6.83 -0.03 4.36 16 4 N -0.43 -9.91 2.58 -119.13 -0.31 -10.21 16 5 C -0.31 -7.67 9.41 -15.00 -0.14 -7.81 16 6 H 0.11 2.95 7.32 -52.49 -0.38 2.56 16 7 C 0.03 0.75 5.11 -17.45 -0.09 0.66 16 8 N -0.88 -21.40 8.59 55.50 0.48 -20.92 16 9 Si 0.94 19.18 29.58 -169.99 -5.03 14.15 16 10 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.49 11.15 7.14 -12.49 -0.09 11.06 16 14 O -0.56 -14.71 16.70 5.26 0.09 -14.62 16 15 C -0.08 -1.60 4.80 -104.99 -0.50 -2.10 16 16 C -0.05 -0.76 9.46 -39.18 -0.37 -1.13 16 17 C -0.09 -1.37 6.23 -39.43 -0.25 -1.62 16 18 Br -0.04 -0.46 33.09 -68.01 -2.25 -2.71 16 19 C 0.08 1.17 6.50 -38.89 -0.25 0.91 16 20 C 0.06 0.87 6.48 -39.19 -0.25 0.62 16 21 C -0.08 -1.48 7.57 -39.01 -0.30 -1.78 16 22 O -0.30 -4.32 10.41 -32.98 -0.34 -4.66 16 23 C 0.02 0.17 7.26 37.40 0.27 0.45 16 24 C 0.02 0.17 7.26 37.40 0.27 0.44 16 25 O -0.29 -3.69 9.68 -32.48 -0.31 -4.01 16 26 H 0.13 2.68 6.46 -51.93 -0.34 2.35 16 27 H 0.08 1.39 5.86 -51.93 -0.30 1.08 16 28 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.15 2.89 4.75 -52.49 -0.25 2.64 16 31 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -30.33 316.07 -6.61 -36.93 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.52 Total: 2.25 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.95 Total: 9.50 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.95 Total: -41.60 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.57 Total: -23.29 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.25 Total: -2.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.33 -6.61 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071184980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.572 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds