Wall clock time and date at job start Tue Mar 31 2020 07:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46832 * 198.71137 * 3 2 1 5 5 C 1.36904 * 119.99501 * 271.67580 * 4 3 2 6 6 H 1.08001 * 119.99623 * 193.73995 * 5 4 3 7 7 C 1.39024 * 120.00089 * 13.73489 * 5 4 3 8 8 N 1.31377 * 119.99999 * 14.46999 * 7 5 4 9 9 Si 1.86803 * 119.99889 * 194.47202 * 7 5 4 10 10 H 1.48502 * 109.47193 * 59.99897 * 9 7 5 11 11 H 1.48495 * 109.47102 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47110 * 300.00186 * 9 7 5 13 13 C 1.34767 * 120.00408 * 91.67863 * 4 3 2 14 14 O 1.21625 * 120.00268 * 184.65946 * 13 4 3 15 15 C 1.47504 * 120.00125 * 4.65471 * 13 4 3 16 16 C 1.39774 * 120.10146 * 128.26220 * 15 13 4 17 17 C 1.37774 * 119.94855 * 180.08272 * 16 15 13 18 18 Br 1.89098 * 119.86996 * 180.02562 * 17 16 15 19 19 C 1.39101 * 120.25976 * 0.02562 * 17 16 15 20 20 C 1.39240 * 120.05281 * 359.84753 * 19 17 16 21 21 C 1.38293 * 119.97437 * 0.19758 * 20 19 17 22 22 O 1.36153 * 120.75970 * 180.21221 * 20 19 17 23 23 C 1.43166 * 116.70103 * 342.75441 * 22 20 19 24 24 C 1.53468 * 108.23181 * 46.21070 * 23 22 20 25 25 O 1.35994 * 119.23210 * 179.64964 * 19 17 16 26 26 H 1.08998 * 109.47544 * 78.70570 * 3 2 1 27 27 H 1.08999 * 109.46850 * 318.70255 * 3 2 1 28 28 H 0.97001 * 120.00067 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.02609 * 0.06373 * 16 15 13 30 30 H 1.07996 * 120.01759 * 179.90414 * 21 20 19 31 31 H 1.08996 * 109.71374 * 165.89716 * 23 22 20 32 32 H 1.08996 * 109.71241 * 286.52837 * 23 22 20 33 33 H 1.08997 * 109.70857 * 180.51189 * 24 23 22 34 34 H 1.09003 * 109.74994 * 59.90783 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3091 0.4431 5 6 3.2907 2.3115 -0.4687 6 1 3.8515 3.1919 -0.1916 7 6 2.7668 2.1961 -1.7513 8 7 1.8586 1.2829 -2.0102 9 14 3.3545 3.3396 -3.1066 10 1 4.8169 3.1681 -3.2995 11 1 2.6463 3.0140 -4.3705 12 1 3.0669 4.7461 -2.7268 13 6 3.3525 1.5260 1.7482 14 8 3.6757 2.6352 2.1283 15 6 3.2413 0.4182 2.7158 16 6 4.2989 0.1386 3.5858 17 6 4.1924 -0.8979 4.4871 18 35 5.6243 -1.2738 5.6636 19 6 3.0357 -1.6690 4.5351 20 6 1.9778 -1.3936 3.6727 21 6 2.0787 -0.3552 2.7650 22 8 0.8373 -2.1364 3.7103 23 6 0.9162 -3.4033 4.3724 24 6 1.6480 -3.2030 5.7065 25 8 2.9558 -2.6916 5.4281 26 1 2.9715 -0.2004 -1.0077 27 1 2.9717 -0.7713 0.6782 28 1 1.4928 1.2026 -2.9050 29 1 5.1990 0.7344 3.5513 30 1 1.2592 -0.1419 2.0948 31 1 -0.0879 -3.7846 4.5575 32 1 1.4693 -4.1085 3.7521 33 1 1.7296 -4.1568 6.2277 34 1 1.0993 -2.4923 6.3245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071184980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:52 Heat of formation + Delta-G solvation = -37.934192 kcal Electronic energy + Delta-G solvation = -24724.721614 eV Core-core repulsion = 20863.466652 eV Total energy + Delta-G solvation = -3861.254962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 366.005 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47204 -40.96960 -38.53603 -38.38489 -37.70918 -36.18930 -34.01474 -33.13301 -32.33610 -30.41228 -29.75782 -29.22414 -27.19794 -25.80309 -24.08210 -22.80570 -21.15151 -19.91461 -19.75749 -18.86598 -18.23913 -18.02271 -17.83018 -16.70533 -16.62747 -16.08759 -15.98443 -15.65602 -15.59439 -15.33338 -15.14409 -14.76950 -14.47529 -14.29758 -13.96731 -13.63436 -13.40059 -13.14457 -13.04109 -12.87614 -12.66400 -12.40497 -12.32415 -12.12040 -11.99536 -11.68299 -11.44406 -11.30553 -11.19516 -10.68662 -10.09060 -9.68773 -9.29582 -8.44441 -6.03745 -0.34958 -0.07314 0.44119 1.36446 1.47762 1.57517 1.64376 1.90765 1.97437 2.10096 2.23804 2.30490 2.37199 2.93177 3.01325 3.16661 3.53406 3.59113 3.67133 3.87680 3.94829 4.02502 4.16802 4.27871 4.43390 4.50859 4.59635 4.63255 4.71445 4.87563 5.07838 5.16540 5.41827 5.70334 5.90378 6.17623 6.30262 6.97397 7.00998 7.21552 7.75975 8.56104 Molecular weight = 366.00amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.003758 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.741857 B = 7449.630950 C = 9085.243906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.267 3.733 3 C 0.223 3.777 4 N -0.438 5.438 5 C -0.337 4.337 6 H 0.093 0.907 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.998 3.002 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.487 3.513 14 O -0.607 6.607 15 C -0.102 4.102 16 C -0.042 4.042 17 C -0.095 4.095 18 Br -0.010 7.010 19 C 0.097 3.903 20 C 0.060 3.940 21 C -0.091 4.091 22 O -0.318 6.318 23 C 0.009 3.991 24 C 0.014 3.986 25 O -0.296 6.296 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.279 0.721 29 H 0.151 0.849 30 H 0.125 0.875 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -15.198 13.813 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.050 4.050 3 C 0.097 3.903 4 N -0.155 5.155 5 C -0.464 4.464 6 H 0.111 0.889 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.821 3.179 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.277 3.723 14 O -0.493 6.493 15 C -0.107 4.107 16 C -0.063 4.063 17 C -0.175 4.175 18 Br 0.076 6.924 19 C 0.048 3.952 20 C 0.014 3.986 21 C -0.111 4.111 22 O -0.233 6.233 23 C -0.065 4.065 24 C -0.060 4.060 25 O -0.210 6.210 26 H 0.150 0.850 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.169 0.831 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.107 0.893 33 H 0.184 0.816 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.627 -14.927 14.260 20.960 hybrid contribution -0.215 0.888 -1.190 1.500 sum 3.411 -14.039 13.070 19.482 Atomic orbital electron populations 1.80900 1.14282 1.10063 1.13309 1.29273 0.95508 0.91178 0.89056 1.19093 0.80842 0.85823 1.04581 1.43703 1.55319 1.11215 1.05289 1.19789 1.33883 1.01162 0.91592 0.88938 1.26029 0.94271 0.99160 1.00234 1.69727 1.25032 1.35369 1.23159 0.84906 0.79075 0.77539 0.76364 1.18280 1.20169 1.20625 1.18212 0.84162 0.87917 0.82045 1.90633 1.54497 1.25745 1.78438 1.19511 0.95163 0.96799 0.99189 1.20906 0.98716 0.94718 0.91970 1.20889 0.94851 0.99649 1.02133 1.96674 1.40821 1.94861 1.60063 1.18490 0.93647 0.91567 0.91520 1.18403 0.87924 0.95767 0.96542 1.20786 0.97846 0.94652 0.97819 1.86405 1.29438 1.32062 1.75427 1.24120 1.06366 0.82614 0.93399 1.24112 0.81280 1.03501 0.97151 1.86375 1.32068 1.45669 1.56844 0.85013 0.86693 0.91039 0.83090 0.85721 0.82651 0.89262 0.81640 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.34 18.44 20.01 0.37 -23.97 16 2 C 0.27 12.04 10.37 89.44 0.93 12.97 16 3 C 0.22 9.14 4.75 84.57 0.40 9.54 16 4 N -0.44 -20.92 2.58 -649.07 -1.68 -22.59 16 5 C -0.34 -17.45 9.41 84.09 0.79 -16.66 16 6 H 0.09 5.07 7.32 -2.91 -0.02 5.05 16 7 C 0.00 0.24 5.11 84.95 0.43 0.67 16 8 N -0.89 -43.73 8.59 21.68 0.19 -43.55 16 9 Si 1.00 39.55 29.58 68.60 2.03 41.58 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.49 23.07 7.14 86.69 0.62 23.69 16 14 O -0.61 -33.15 16.70 -4.11 -0.07 -33.22 16 15 C -0.10 -3.90 4.80 -20.10 -0.10 -4.00 16 16 C -0.04 -1.39 9.46 22.53 0.21 -1.17 16 17 C -0.10 -2.72 6.23 22.37 0.14 -2.58 16 18 Br -0.01 -0.23 33.09 -20.37 -0.67 -0.90 16 19 C 0.10 2.65 6.50 22.72 0.15 2.79 16 20 C 0.06 1.82 6.48 22.52 0.15 1.97 16 21 C -0.09 -3.28 7.57 22.64 0.17 -3.11 16 22 O -0.32 -8.60 10.41 -83.10 -0.87 -9.46 16 23 C 0.01 0.14 7.26 72.14 0.52 0.66 16 24 C 0.01 0.18 7.26 72.14 0.52 0.71 16 25 O -0.30 -6.42 9.68 -81.29 -0.79 -7.21 16 26 H 0.13 5.41 6.46 -2.39 -0.02 5.39 16 27 H 0.12 3.90 5.86 -2.39 -0.01 3.89 16 28 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 29 H 0.15 4.79 8.06 -2.91 -0.02 4.76 16 30 H 0.13 5.05 4.75 -2.91 -0.01 5.04 16 31 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.17 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.36 316.07 4.64 -62.72 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.18 Total: 11.12 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 4.94 Total: 25.49 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -1.12 Total: -90.11 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.72 Total: -49.89 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.67 Total: -0.90 kcal Total: -67.36 4.64 -62.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071184980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.782 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds