Wall clock time and date at job start Tue Mar 31 2020 06:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42108 * 108.57694 * 2 1 4 4 O 1.42098 * 108.58099 * 228.97243 * 2 1 3 5 5 C 1.81404 * 101.91704 * 114.48425 * 2 1 3 6 6 C 1.50699 * 109.46557 * 180.02562 * 5 2 1 7 7 C 1.38356 * 119.85765 * 90.00230 * 6 5 2 8 8 C 1.37964 * 120.14669 * 179.97438 * 7 6 5 9 9 C 1.39577 * 119.85088 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.14179 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00172 * 330.09908 * 10 9 8 12 12 N 1.34779 * 119.99749 * 150.37403 * 10 9 8 13 13 C 1.46507 * 120.00130 * 5.89004 * 12 10 9 14 14 C 1.50701 * 109.47014 * 98.78163 * 13 12 10 15 15 H 1.08002 * 120.00176 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99548 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99568 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 120.00412 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47280 * 90.00113 * 18 16 14 20 20 H 1.48495 * 109.47520 * 210.00083 * 18 16 14 21 21 H 1.48501 * 109.47188 * 330.00755 * 18 16 14 22 22 C 1.46501 * 119.99942 * 185.88364 * 12 10 9 23 23 C 1.53002 * 109.46767 * 87.14923 * 22 12 10 24 24 C 1.53780 * 113.61346 * 272.11400 * 23 22 12 25 25 C 1.53955 * 87.01716 * 220.04908 * 24 23 22 26 26 C 1.53777 * 87.11410 * 25.36333 * 25 24 23 27 27 C 1.39579 * 119.71357 * 0.27645 * 9 8 7 28 28 C 1.37958 * 119.85100 * 359.44577 * 27 9 8 29 29 H 1.08994 * 109.47626 * 305.51356 * 1 2 3 30 30 H 1.09005 * 109.46669 * 65.51508 * 1 2 3 31 31 H 1.09003 * 109.47301 * 185.51017 * 1 2 3 32 32 H 1.08993 * 109.47121 * 60.00284 * 5 2 1 33 33 H 1.09002 * 109.47024 * 300.00256 * 5 2 1 34 34 H 1.07999 * 119.92762 * 359.97438 * 7 6 5 35 35 H 1.07997 * 120.07071 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47023 * 218.78378 * 13 12 10 37 37 H 1.09003 * 109.47017 * 338.78357 * 13 12 10 38 38 H 0.97006 * 119.99811 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.46947 * 207.14676 * 22 12 10 40 40 H 1.09000 * 109.47348 * 327.14918 * 22 12 10 41 41 H 1.09005 * 112.84913 * 43.31274 * 23 22 12 42 42 H 1.08999 * 113.61615 * 334.56971 * 24 23 22 43 43 H 1.09001 * 113.61425 * 105.47336 * 24 23 22 44 44 H 1.09002 * 113.53938 * 270.80827 * 25 24 23 45 45 H 1.08998 * 113.74030 * 139.94892 * 25 24 23 46 46 H 1.08992 * 113.61727 * 220.08764 * 26 25 24 47 47 H 1.09006 * 113.68996 * 89.19300 * 26 25 24 48 48 H 1.07999 * 120.07393 * 179.72392 * 27 9 8 49 49 H 1.07996 * 119.93319 * 180.25154 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6825 -0.8171 1.7958 7 6 4.3648 0.2376 2.3757 8 6 5.7324 0.1692 2.5442 9 6 6.4277 -0.9672 2.1277 10 6 7.8932 -1.0476 2.3057 11 8 8.5646 -0.0346 2.2844 12 7 8.4854 -2.2448 2.4862 13 6 7.6978 -3.4754 2.3776 14 6 7.8943 -4.0785 1.0106 15 1 8.5408 -3.5935 0.2941 16 6 7.2479 -5.2490 0.6742 17 7 7.4190 -5.7751 -0.5191 18 14 6.1293 -6.0876 1.9129 19 1 4.7455 -5.5709 1.7595 20 1 6.1393 -7.5535 1.6762 21 1 6.6135 -5.8048 3.2880 22 6 9.9166 -2.3156 2.7908 23 6 10.1223 -2.2030 4.3028 24 6 10.2479 -0.7537 4.8011 25 6 11.3519 -1.2597 5.7474 26 6 11.5828 -2.4002 4.7421 27 6 5.7342 -2.0250 1.5377 28 6 4.3659 -1.9462 1.3802 29 1 -0.3634 0.5969 0.8364 30 1 -0.3633 0.4260 -0.9353 31 1 -0.3634 -1.0229 0.0987 32 1 1.7609 -1.7368 1.6666 33 1 1.7608 -0.1170 2.4043 34 1 3.8257 1.1165 2.6971 35 1 6.2637 0.9930 2.9974 36 1 8.0250 -4.1845 3.1380 37 1 6.6425 -3.2457 2.5251 38 1 6.9645 -6.5988 -0.7556 39 1 10.3162 -3.2670 2.4396 40 1 10.4353 -1.4971 2.2916 41 1 9.4105 -2.8006 4.8724 42 1 10.6082 -0.0603 4.0412 43 1 9.3598 -0.3915 5.3191 44 1 10.9761 -1.5981 6.7130 45 1 12.1984 -0.5791 5.8377 46 1 11.7708 -3.3653 5.2123 47 1 12.3087 -2.1592 3.9654 48 1 6.2670 -2.9052 1.2092 49 1 3.8275 -2.7657 0.9275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071803310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:14 Heat of formation + Delta-G solvation = -31.966391 kcal Electronic energy + Delta-G solvation = -31454.573963 eV Core-core repulsion = 27282.974371 eV Total energy + Delta-G solvation = -4171.599592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.12984 -38.76739 -37.66736 -37.05356 -36.06910 -35.31637 -33.01903 -32.64231 -30.82332 -29.96938 -29.03511 -27.99420 -26.80469 -25.32742 -23.23015 -22.86501 -22.24702 -21.47371 -19.19653 -19.00746 -18.93724 -17.14519 -16.82076 -16.70032 -16.61158 -16.23032 -15.90473 -15.27332 -15.11581 -14.95475 -14.47452 -14.46599 -14.10834 -13.73364 -13.51455 -13.47613 -13.41753 -13.10052 -12.76568 -12.74959 -12.56625 -12.40826 -12.19496 -12.12799 -12.04800 -11.93544 -11.80235 -11.40801 -11.25034 -11.19205 -10.91873 -10.90256 -10.81896 -10.63485 -10.32349 -10.10580 -10.07020 -9.88368 -9.67545 -9.16535 -8.90776 -8.59644 -8.35775 -7.75388 -6.35083 -4.38418 -0.28612 1.24304 1.70112 2.58035 3.07497 3.17353 3.18542 3.31621 3.52425 3.74132 3.80065 4.13922 4.17923 4.35058 4.42396 4.50471 4.80557 4.85335 4.91829 4.93915 4.99495 5.06793 5.16790 5.26614 5.28107 5.31307 5.33885 5.73262 5.74391 5.78160 5.87302 5.95512 5.99125 6.02897 6.09136 6.15669 6.25995 6.32069 6.36652 6.41692 6.52632 6.56098 6.64144 6.75496 6.78584 6.86013 7.22246 7.23840 7.37241 8.02816 8.32573 8.73279 8.85911 9.21640 10.76312 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.003365 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.466578 B = 8318.552230 C =10434.340283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.413 3.587 3 O -0.933 6.933 4 O -0.926 6.926 5 C -0.561 4.561 6 C -0.084 4.084 7 C -0.124 4.124 8 C -0.069 4.069 9 C -0.118 4.118 10 C 0.559 3.441 11 O -0.558 6.558 12 N -0.580 5.580 13 C 0.179 3.821 14 C -0.547 4.547 15 H 0.084 0.916 16 C 0.082 3.918 17 N -0.876 5.876 18 Si 0.860 3.140 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.261 1.261 22 C 0.130 3.870 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.132 4.132 27 C -0.102 4.102 28 C -0.117 4.117 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.031 0.969 37 H 0.056 0.944 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.201 0.799 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 7.570 9.382 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.595 3.405 3 O -0.930 6.930 4 O -0.923 6.923 5 C -0.689 4.689 6 C -0.085 4.085 7 C -0.143 4.143 8 C -0.087 4.087 9 C -0.121 4.121 10 C 0.347 3.653 11 O -0.439 6.439 12 N -0.308 5.308 13 C 0.058 3.942 14 C -0.585 4.585 15 H 0.102 0.898 16 C -0.124 4.124 17 N -0.512 5.512 18 Si 0.685 3.315 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.185 1.185 22 C 0.007 3.993 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.182 4.182 26 C -0.170 4.170 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.217 0.783 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.581 8.201 8.564 15.244 hybrid contribution -1.454 -1.042 1.130 2.116 sum -11.035 7.159 9.694 16.340 Atomic orbital electron populations 1.30349 1.27593 1.11444 1.11610 1.08325 0.78039 0.76188 0.77951 1.93599 1.78762 1.34349 1.86267 1.93639 1.78520 1.66753 1.53362 1.29312 1.01903 1.14472 1.23174 1.19020 0.90903 0.96313 1.02304 1.20885 0.94424 0.98128 1.00858 1.21141 0.93458 0.96584 0.97563 1.20142 0.93974 0.95718 1.02298 1.18192 0.87079 0.83412 0.76588 1.90673 1.65219 1.35158 1.52803 1.47729 1.09309 1.06476 1.67332 1.20681 0.92956 0.82431 0.98123 1.21342 1.30572 1.08577 0.98008 0.89808 1.24916 0.96128 0.96308 0.95061 1.69883 1.41846 1.20090 1.19344 0.87088 0.81950 0.79920 0.82536 1.19178 1.20472 1.18498 1.21374 0.81537 1.03060 0.93340 1.22968 0.96916 0.97590 0.97018 1.22932 0.98137 0.96560 0.98715 1.22860 0.99259 0.98465 0.97643 1.22852 0.96697 0.98561 0.98860 1.23452 0.94547 1.00498 0.93345 1.21209 0.95151 0.97334 0.99959 0.85496 0.85319 0.85361 0.84091 0.84264 0.85325 0.85006 0.95105 0.92682 0.91967 0.89760 0.90527 0.89486 0.89533 0.92381 0.90799 0.91899 0.91709 0.90034 0.78335 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.51 10.62 101.05 1.07 -2.44 16 2 S 2.41 24.95 5.34 -107.50 -0.57 24.38 16 3 O -0.93 -12.94 18.10 -57.83 -1.05 -13.99 16 4 O -0.93 -13.96 18.10 -57.83 -1.05 -15.01 16 5 C -0.56 -5.08 5.93 36.01 0.21 -4.87 16 6 C -0.08 -1.21 5.15 -104.53 -0.54 -1.75 16 7 C -0.12 -1.81 9.68 -39.64 -0.38 -2.19 16 8 C -0.07 -1.16 9.60 -39.18 -0.38 -1.54 16 9 C -0.12 -2.32 5.58 -104.97 -0.59 -2.90 16 10 C 0.56 11.79 7.45 -12.33 -0.09 11.69 16 11 O -0.56 -12.43 15.67 5.32 0.08 -12.35 16 12 N -0.58 -11.90 2.47 -176.17 -0.44 -12.34 16 13 C 0.18 3.87 3.70 -5.19 -0.02 3.85 16 14 C -0.55 -13.86 8.04 -34.44 -0.28 -14.13 16 15 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 16 C 0.08 2.11 5.35 -17.82 -0.10 2.01 16 17 N -0.88 -24.47 13.96 55.43 0.77 -23.70 16 18 Si 0.86 18.72 27.37 -169.99 -4.65 14.07 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 22 C 0.13 2.35 5.26 -4.04 -0.02 2.33 16 23 C -0.13 -1.92 3.94 -89.81 -0.35 -2.27 16 24 C -0.13 -1.84 7.11 -25.83 -0.18 -2.03 16 25 C -0.14 -1.74 8.09 -25.83 -0.21 -1.95 16 26 C -0.13 -1.67 7.65 -25.92 -0.20 -1.86 16 27 C -0.10 -2.03 7.48 -39.18 -0.29 -2.32 16 28 C -0.12 -2.03 9.68 -39.64 -0.38 -2.41 16 29 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.14 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.14 0.75 8.08 -51.92 -0.42 0.33 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.13 2.07 7.92 -52.49 -0.42 1.65 16 36 H 0.03 0.66 7.19 -51.93 -0.37 0.29 16 37 H 0.06 1.17 3.48 -51.97 -0.18 0.99 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 40 H 0.08 1.43 7.12 -51.93 -0.37 1.06 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 48 H 0.20 4.44 2.98 -52.49 -0.16 4.28 16 49 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -34.82 408.47 -10.86 -45.68 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.40 Total: 9.86 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.72 Total: -22.77 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.34 Total: -36.03 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.01 Total: -41.35 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.65 Total: 14.07 kcal Atomic # 16 Polarization: 24.95 SS G_CDS: -0.57 Total: 24.38 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.82 -10.86 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071803310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.716 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds