Wall clock time and date at job start Tue Mar 31 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34940 * 126.04050 * 2 1 4 4 C 1.35320 * 107.74762 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.04175 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.87269 * 19.29883 * 5 4 3 7 7 C 1.54324 * 109.88084 * 258.28593 * 5 4 3 8 8 C 1.55409 * 102.82499 * 218.48042 * 7 5 4 9 9 C 1.54907 * 101.66323 * 35.33809 * 8 7 5 10 10 N 1.47024 * 109.88425 * 140.31453 * 5 4 3 11 11 C 1.34774 * 125.64773 * 298.32704 * 10 5 4 12 12 O 1.21666 * 119.99944 * 354.68220 * 11 10 5 13 13 C 1.46885 * 119.99953 * 174.68186 * 11 10 5 14 14 C 1.36123 * 125.43632 * 353.74015 * 13 11 10 15 15 C 1.41705 * 107.74899 * 179.97438 * 14 13 11 16 16 C 1.40019 * 133.35307 * 180.02562 * 15 14 13 17 17 C 1.36577 * 119.83327 * 180.02562 * 16 15 14 18 18 C 1.38855 * 120.59926 * 359.96018 * 17 16 15 19 19 C 1.37851 * 120.63340 * 0.02562 * 18 17 16 20 20 C 1.39083 * 119.81145 * 359.97438 * 19 18 17 21 21 N 1.37844 * 133.16020 * 180.34986 * 20 19 18 22 22 C 1.36890 * 125.62176 * 359.93422 * 21 20 19 23 23 H 1.07997 * 119.99932 * 135.29709 * 22 21 20 24 24 C 1.39004 * 119.99870 * 315.30469 * 22 21 20 25 25 N 1.31353 * 120.00033 * 168.24918 * 24 22 21 26 26 Si 1.86797 * 120.00438 * 348.24287 * 24 22 21 27 27 H 1.48500 * 109.47147 * 93.98668 * 26 24 22 28 28 H 1.48495 * 109.47375 * 213.99184 * 26 24 22 29 29 H 1.48509 * 109.46910 * 333.99072 * 26 24 22 30 30 C 1.39876 * 107.91807 * 359.97438 * 4 3 2 31 31 N 1.30833 * 108.20341 * 0.26340 * 30 4 3 32 32 H 1.08999 * 109.47233 * 89.99566 * 1 2 3 33 33 H 1.08998 * 109.47393 * 210.00419 * 1 2 3 34 34 H 1.09000 * 109.46643 * 329.99595 * 1 2 3 35 35 H 1.07994 * 126.12702 * 0.03669 * 3 2 1 36 36 H 1.08999 * 110.71864 * 336.74984 * 7 5 4 37 37 H 1.09000 * 110.71985 * 100.02806 * 7 5 4 38 38 H 1.08992 * 110.89203 * 277.26749 * 8 7 5 39 39 H 1.09004 * 111.06864 * 153.48464 * 8 7 5 40 40 H 1.09004 * 110.36399 * 204.23251 * 9 8 7 41 41 H 1.09002 * 110.46369 * 81.96708 * 9 8 7 42 42 H 1.07997 * 126.12776 * 359.96819 * 14 13 11 43 43 H 1.08002 * 120.08021 * 359.95871 * 16 15 14 44 44 H 1.07998 * 119.69999 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.68157 * 179.97438 * 18 17 16 46 46 H 1.08000 * 120.09278 * 179.97438 * 19 18 17 47 47 H 0.96998 * 120.00661 * 179.97438 * 25 24 22 48 48 H 1.08000 * 125.89358 * 180.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5438 0.6664 -0.0006 5 6 4.7681 1.5451 -0.0013 6 1 4.5052 2.5472 0.3374 7 6 5.3656 1.6114 -1.4227 8 6 6.8963 1.5932 -1.1547 9 6 6.9878 0.6552 0.0747 10 7 5.7952 0.9723 0.8811 11 6 5.6677 0.7712 2.2077 12 8 4.6723 1.1605 2.7890 13 6 6.7303 0.0820 2.9515 14 6 7.8283 -0.5031 2.3992 15 6 8.6008 -1.0527 3.4525 16 6 9.8096 -1.7582 3.4910 17 6 10.3184 -2.1693 4.6899 18 6 9.6480 -1.8934 5.8742 19 6 8.4566 -1.2002 5.8619 20 6 7.9187 -0.7712 4.6531 21 7 6.7784 -0.0700 4.3244 22 6 5.8448 0.3948 5.2112 23 1 5.4571 1.3977 5.1108 24 6 5.3961 -0.4241 6.2409 25 7 4.6840 0.0836 7.2209 26 14 5.8054 -2.2467 6.2308 27 1 7.0361 -2.4820 7.0280 28 1 4.6782 -3.0105 6.8233 29 1 6.0276 -2.6964 4.8330 30 6 3.5346 -0.7323 -0.0003 31 7 2.2891 -1.1329 -0.0054 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3632 0.8900 0.5139 35 1 1.9282 2.1192 0.0006 36 1 5.0665 0.7417 -2.0077 37 1 5.0701 2.5339 -1.9225 38 1 7.2603 2.5915 -0.9123 39 1 7.4379 1.1776 -2.0044 40 1 7.8953 0.8612 0.6423 41 1 6.9667 -0.3883 -0.2397 42 1 8.0678 -0.5417 1.3469 43 1 10.3377 -1.9776 2.5749 44 1 11.2508 -2.7137 4.7171 45 1 10.0636 -2.2259 6.8140 46 1 7.9423 -0.9907 6.7882 47 1 4.3705 -0.4879 7.9393 48 1 4.4054 -1.3712 -0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071847562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:08 Heat of formation + Delta-G solvation = 138.824824 kcal Electronic energy + Delta-G solvation = -33400.791108 eV Core-core repulsion = 29231.165041 eV Total energy + Delta-G solvation = -4169.626067 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.22361 -40.73670 -39.13723 -36.94518 -35.92183 -33.64215 -33.17953 -31.85344 -31.02128 -30.96456 -29.21673 -28.57235 -27.80589 -26.18299 -24.79477 -24.19988 -22.23591 -21.47930 -21.17725 -20.90895 -20.15505 -19.83758 -18.83539 -17.95716 -16.76350 -16.27774 -16.07381 -15.59264 -15.54279 -15.33046 -14.85621 -14.34919 -14.20366 -14.16753 -13.78363 -13.52313 -13.46356 -13.13912 -13.13399 -12.94529 -12.79397 -12.73182 -12.65926 -12.38151 -12.19977 -12.03737 -11.84951 -11.35695 -11.32298 -11.09215 -10.89689 -10.84708 -10.64298 -10.45944 -10.39442 -10.14706 -9.78127 -9.38671 -9.26157 -9.12534 -8.59139 -8.39267 -8.10024 -7.30802 -6.91495 -6.74134 -4.42035 1.63003 2.02095 2.51177 2.63327 2.86259 2.91329 3.09856 3.22138 3.29866 3.33691 3.99306 4.16421 4.36928 4.55775 4.61888 4.66302 4.74264 4.86855 4.91193 4.98402 5.06121 5.20749 5.32046 5.36654 5.39596 5.40744 5.56779 5.65104 5.72389 5.75177 5.78764 5.84324 5.87299 5.91677 6.07021 6.11990 6.14786 6.24052 6.31632 6.43172 6.57459 6.70275 6.78330 6.80147 6.84486 7.11560 7.23551 7.33409 7.36220 7.65550 7.67089 7.84077 7.94631 7.99492 8.32732 8.79109 8.94627 9.13388 10.30971 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.003977 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.916765 B = 7039.054840 C = 8726.754525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.379 5.379 3 C 0.067 3.933 4 C -0.234 4.234 5 C 0.222 3.778 6 H 0.077 0.923 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.091 3.909 10 N -0.611 5.611 11 C 0.600 3.400 12 O -0.509 6.509 13 C -0.005 4.005 14 C -0.214 4.214 15 C -0.119 4.119 16 C -0.082 4.082 17 C -0.157 4.157 18 C -0.136 4.136 19 C -0.103 4.103 20 C 0.050 3.950 21 N -0.253 5.253 22 C -0.325 4.325 23 H 0.126 0.874 24 C 0.078 3.922 25 N -0.834 5.834 26 Si 0.872 3.128 27 H -0.244 1.244 28 H -0.285 1.285 29 H -0.255 1.255 30 C 0.070 3.930 31 N -0.301 5.301 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.120 0.880 47 H 0.284 0.716 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 1.453 -16.858 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.162 5.162 3 C -0.080 4.080 4 C -0.246 4.246 5 C 0.118 3.882 6 H 0.095 0.905 7 C -0.159 4.159 8 C -0.173 4.173 9 C -0.031 4.031 10 N -0.348 5.348 11 C 0.391 3.609 12 O -0.383 6.383 13 C -0.122 4.122 14 C -0.240 4.240 15 C -0.123 4.123 16 C -0.101 4.101 17 C -0.176 4.176 18 C -0.156 4.156 19 C -0.123 4.123 20 C -0.063 4.063 21 N 0.086 4.914 22 C -0.453 4.453 23 H 0.144 0.856 24 C -0.134 4.134 25 N -0.464 5.464 26 Si 0.697 3.303 27 H -0.169 1.169 28 H -0.212 1.212 29 H -0.178 1.178 30 C -0.116 4.116 31 N -0.122 5.122 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.138 0.862 47 H 0.095 0.905 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.182 0.807 -15.969 16.033 hybrid contribution 0.377 -0.201 0.351 0.553 sum -0.805 0.606 -15.618 15.650 Atomic orbital electron populations 1.21785 0.74582 1.04494 1.02809 1.48372 1.06421 1.03892 1.57482 1.22161 0.90718 0.93209 1.01910 1.20212 0.94183 0.94200 1.16015 1.19550 0.84716 0.94764 0.89213 0.90548 1.22726 0.95131 1.02846 0.95149 1.22876 0.96098 1.00486 0.97835 1.22731 0.89824 0.98668 0.91921 1.48116 1.15538 1.64896 1.06248 1.16789 0.85717 0.78814 0.79602 1.90844 1.30969 1.49432 1.67099 1.19726 0.98929 1.09268 0.84261 1.21017 0.96842 1.08004 0.98145 1.17973 0.96863 1.04737 0.92767 1.20127 0.94406 0.98455 0.97088 1.20346 1.00401 1.04220 0.92625 1.20538 0.95483 1.01929 0.97662 1.20292 0.96407 0.99799 0.95771 1.18392 0.89026 1.03798 0.95074 1.40220 1.13602 1.34332 1.03283 1.19496 1.18433 1.01765 1.05573 0.85622 1.25485 0.94029 0.99782 0.94122 1.69630 1.30938 1.37414 1.08410 0.87030 0.78654 0.83305 0.81343 1.16892 1.21179 1.17849 1.23568 0.94847 0.94520 0.98682 1.77327 1.01733 1.08167 1.24983 0.91097 0.89483 0.89633 0.81216 0.90441 0.90274 0.90600 0.90003 0.88900 0.91378 0.83657 0.87254 0.87360 0.87046 0.86216 0.90520 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 11.47 59.85 0.69 1.67 16 2 N -0.38 -5.40 4.01 -68.16 -0.27 -5.68 16 3 C 0.07 0.91 11.40 -17.23 -0.20 0.71 16 4 C -0.23 -3.50 4.31 -105.05 -0.45 -3.96 16 5 C 0.22 3.02 3.25 -68.10 -0.22 2.80 16 6 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.12 -1.12 6.49 -24.76 -0.16 -1.28 16 8 C -0.13 -1.18 7.09 -24.45 -0.17 -1.35 16 9 C 0.09 1.10 5.08 -2.53 -0.01 1.09 16 10 N -0.61 -9.91 2.82 -165.78 -0.47 -10.38 16 11 C 0.60 13.21 7.55 -12.76 -0.10 13.11 16 12 O -0.51 -13.27 15.20 5.22 0.08 -13.19 16 13 C 0.00 -0.11 6.73 -82.25 -0.55 -0.67 16 14 C -0.21 -4.28 9.12 -39.02 -0.36 -4.63 16 15 C -0.12 -2.55 6.16 -106.89 -0.66 -3.21 16 16 C -0.08 -1.50 10.06 -39.51 -0.40 -1.90 16 17 C -0.16 -2.76 9.97 -39.95 -0.40 -3.16 16 18 C -0.14 -2.63 10.02 -39.49 -0.40 -3.03 16 19 C -0.10 -2.37 6.60 -39.41 -0.26 -2.63 16 20 C 0.05 1.23 5.02 -83.83 -0.42 0.81 16 21 N -0.25 -6.65 2.43 -56.08 -0.14 -6.78 16 22 C -0.32 -9.38 9.04 -15.01 -0.14 -9.52 16 23 H 0.13 3.96 7.51 -52.49 -0.39 3.57 16 24 C 0.08 2.21 5.15 -17.47 -0.09 2.12 16 25 N -0.83 -23.96 13.95 55.50 0.77 -23.19 16 26 Si 0.87 21.98 23.79 -169.99 -4.04 17.93 16 27 H -0.24 -5.67 5.42 56.52 0.31 -5.36 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.25 -6.82 6.98 56.52 0.39 -6.43 16 30 C 0.07 1.16 11.68 -17.36 -0.20 0.95 16 31 N -0.30 -5.15 12.58 30.63 0.39 -4.77 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.16 5.83 -51.93 -0.30 0.86 16 41 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 42 H 0.15 2.27 4.54 -52.49 -0.24 2.04 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.12 2.84 5.55 -52.49 -0.29 2.55 16 47 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.18 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -36.06 385.07 -8.72 -44.78 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.35 Total: 7.53 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -4.50 Total: -12.07 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.28 Total: -50.79 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.04 Total: 17.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.06 -8.72 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.606 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds