Wall clock time and date at job start Tue Mar 31 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34940 * 126.04050 * 2 1 4 4 C 1.35320 * 107.74762 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.04175 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.87269 * 19.29883 * 5 4 3 7 7 C 1.54324 * 109.88084 * 258.28593 * 5 4 3 8 8 C 1.55409 * 102.82499 * 218.48042 * 7 5 4 9 9 C 1.54907 * 101.66323 * 35.33809 * 8 7 5 10 10 N 1.47024 * 109.88425 * 140.31453 * 5 4 3 11 11 C 1.34774 * 125.64773 * 298.32704 * 10 5 4 12 12 O 1.21666 * 119.99944 * 354.68220 * 11 10 5 13 13 C 1.46885 * 119.99953 * 174.68186 * 11 10 5 14 14 C 1.36123 * 125.43632 * 353.74015 * 13 11 10 15 15 C 1.41705 * 107.74899 * 179.97438 * 14 13 11 16 16 C 1.40019 * 133.35307 * 180.02562 * 15 14 13 17 17 C 1.36577 * 119.83327 * 180.02562 * 16 15 14 18 18 C 1.38855 * 120.59926 * 359.96018 * 17 16 15 19 19 C 1.37851 * 120.63340 * 0.02562 * 18 17 16 20 20 C 1.39083 * 119.81145 * 359.97438 * 19 18 17 21 21 N 1.37844 * 133.16020 * 180.34986 * 20 19 18 22 22 C 1.36890 * 125.62176 * 359.93422 * 21 20 19 23 23 H 1.07997 * 119.99932 * 135.29709 * 22 21 20 24 24 C 1.39004 * 119.99870 * 315.30469 * 22 21 20 25 25 N 1.31353 * 120.00033 * 168.24918 * 24 22 21 26 26 Si 1.86797 * 120.00438 * 348.24287 * 24 22 21 27 27 H 1.48500 * 109.47147 * 93.98668 * 26 24 22 28 28 H 1.48495 * 109.47375 * 213.99184 * 26 24 22 29 29 H 1.48509 * 109.46910 * 333.99072 * 26 24 22 30 30 C 1.39876 * 107.91807 * 359.97438 * 4 3 2 31 31 N 1.30833 * 108.20341 * 0.26340 * 30 4 3 32 32 H 1.08999 * 109.47233 * 89.99566 * 1 2 3 33 33 H 1.08998 * 109.47393 * 210.00419 * 1 2 3 34 34 H 1.09000 * 109.46643 * 329.99595 * 1 2 3 35 35 H 1.07994 * 126.12702 * 0.03669 * 3 2 1 36 36 H 1.08999 * 110.71864 * 336.74984 * 7 5 4 37 37 H 1.09000 * 110.71985 * 100.02806 * 7 5 4 38 38 H 1.08992 * 110.89203 * 277.26749 * 8 7 5 39 39 H 1.09004 * 111.06864 * 153.48464 * 8 7 5 40 40 H 1.09004 * 110.36399 * 204.23251 * 9 8 7 41 41 H 1.09002 * 110.46369 * 81.96708 * 9 8 7 42 42 H 1.07997 * 126.12776 * 359.96819 * 14 13 11 43 43 H 1.08002 * 120.08021 * 359.95871 * 16 15 14 44 44 H 1.07998 * 119.69999 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.68157 * 179.97438 * 18 17 16 46 46 H 1.08000 * 120.09278 * 179.97438 * 19 18 17 47 47 H 0.96998 * 120.00661 * 179.97438 * 25 24 22 48 48 H 1.08000 * 125.89358 * 180.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5438 0.6664 -0.0006 5 6 4.7681 1.5451 -0.0013 6 1 4.5052 2.5472 0.3374 7 6 5.3656 1.6114 -1.4227 8 6 6.8963 1.5932 -1.1547 9 6 6.9878 0.6552 0.0747 10 7 5.7952 0.9723 0.8811 11 6 5.6677 0.7712 2.2077 12 8 4.6723 1.1605 2.7890 13 6 6.7303 0.0820 2.9515 14 6 7.8283 -0.5031 2.3992 15 6 8.6008 -1.0527 3.4525 16 6 9.8096 -1.7582 3.4910 17 6 10.3184 -2.1693 4.6899 18 6 9.6480 -1.8934 5.8742 19 6 8.4566 -1.2002 5.8619 20 6 7.9187 -0.7712 4.6531 21 7 6.7784 -0.0700 4.3244 22 6 5.8448 0.3948 5.2112 23 1 5.4571 1.3977 5.1108 24 6 5.3961 -0.4241 6.2409 25 7 4.6840 0.0836 7.2209 26 14 5.8054 -2.2467 6.2308 27 1 7.0361 -2.4820 7.0280 28 1 4.6782 -3.0105 6.8233 29 1 6.0276 -2.6964 4.8330 30 6 3.5346 -0.7323 -0.0003 31 7 2.2891 -1.1329 -0.0054 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3632 0.8900 0.5139 35 1 1.9282 2.1192 0.0006 36 1 5.0665 0.7417 -2.0077 37 1 5.0701 2.5339 -1.9225 38 1 7.2603 2.5915 -0.9123 39 1 7.4379 1.1776 -2.0044 40 1 7.8953 0.8612 0.6423 41 1 6.9667 -0.3883 -0.2397 42 1 8.0678 -0.5417 1.3469 43 1 10.3377 -1.9776 2.5749 44 1 11.2508 -2.7137 4.7171 45 1 10.0636 -2.2259 6.8140 46 1 7.9423 -0.9907 6.7882 47 1 4.3705 -0.4879 7.9393 48 1 4.4054 -1.3712 -0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071847562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:07 Heat of formation + Delta-G solvation = 114.783323 kcal Electronic energy + Delta-G solvation = -33401.833625 eV Core-core repulsion = 29231.165041 eV Total energy + Delta-G solvation = -4170.668585 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.57045 -42.19610 -40.48551 -38.37204 -37.54357 -35.51680 -34.25645 -33.44902 -32.48024 -32.02949 -30.86110 -29.90951 -29.04187 -27.20545 -26.67777 -25.58560 -23.59911 -22.79612 -22.41067 -22.01505 -21.53384 -21.37086 -20.29242 -19.68020 -18.05761 -17.65457 -17.48348 -17.29224 -16.99123 -16.43347 -16.33238 -15.95096 -15.80454 -15.36860 -15.12378 -15.09725 -14.82034 -14.68878 -14.53432 -14.38857 -14.18251 -13.81641 -13.70768 -13.61603 -13.43395 -13.33754 -13.19247 -12.99712 -12.74927 -12.51805 -12.32653 -12.24618 -12.01132 -11.78673 -11.75165 -11.45899 -11.40521 -11.25320 -10.84292 -10.39250 -10.36997 -9.70154 -9.26309 -8.99976 -8.82211 -8.58843 -6.54214 0.01445 0.91040 0.91868 1.05535 1.09014 1.23681 1.37253 1.63753 1.69196 1.95791 1.98684 2.39627 2.72655 2.83726 3.15909 3.57801 3.66211 3.78751 3.95435 3.95805 4.10136 4.18260 4.27889 4.29896 4.37300 4.38569 4.39828 4.41875 4.55963 4.60934 4.64975 4.71691 4.80068 4.82716 4.86358 5.00493 5.04911 5.07752 5.10702 5.16743 5.24136 5.28233 5.39497 5.49291 5.59352 5.62599 5.68853 5.79237 5.82815 6.06582 6.11952 6.15002 6.42763 6.56515 6.68441 6.82238 7.17376 7.36503 8.29199 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.003977 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.916765 B = 7039.054840 C = 8726.754525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.250 4.250 5 C 0.214 3.786 6 H 0.067 0.933 7 C -0.106 4.106 8 C -0.119 4.119 9 C 0.076 3.924 10 N -0.600 5.600 11 C 0.591 3.409 12 O -0.571 6.571 13 C -0.037 4.037 14 C -0.175 4.175 15 C -0.141 4.141 16 C -0.065 4.065 17 C -0.155 4.155 18 C -0.109 4.109 19 C -0.158 4.158 20 C 0.035 3.965 21 N -0.296 5.296 22 C -0.336 4.336 23 H 0.072 0.928 24 C 0.037 3.963 25 N -0.885 5.885 26 Si 0.929 3.071 27 H -0.212 1.212 28 H -0.284 1.284 29 H -0.280 1.280 30 C 0.053 3.947 31 N -0.340 5.340 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.203 0.797 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.195 0.805 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.143 0.857 46 H 0.097 0.903 47 H 0.288 0.712 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 -0.176 -20.653 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.262 4.262 5 C 0.110 3.890 6 H 0.085 0.915 7 C -0.144 4.144 8 C -0.157 4.157 9 C -0.045 4.045 10 N -0.334 5.334 11 C 0.382 3.618 12 O -0.450 6.450 13 C -0.151 4.151 14 C -0.201 4.201 15 C -0.146 4.146 16 C -0.084 4.084 17 C -0.173 4.173 18 C -0.129 4.129 19 C -0.178 4.178 20 C -0.078 4.078 21 N 0.039 4.961 22 C -0.465 4.465 23 H 0.090 0.910 24 C -0.169 4.169 25 N -0.519 5.519 26 Si 0.753 3.247 27 H -0.135 1.135 28 H -0.211 1.211 29 H -0.205 1.205 30 C -0.133 4.133 31 N -0.162 5.162 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.220 0.780 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.212 0.788 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.161 0.839 46 H 0.115 0.885 47 H 0.098 0.902 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.690 -0.819 -19.828 20.027 hybrid contribution -0.581 0.317 1.282 1.443 sum 2.110 -0.502 -18.546 18.673 Atomic orbital electron populations 1.22161 0.72130 1.05364 1.04876 1.48758 1.07899 1.03295 1.56436 1.22739 0.90514 0.94476 1.00587 1.20436 0.95339 0.93819 1.16615 1.19895 0.84236 0.93668 0.91201 0.91529 1.22706 0.95238 1.04464 0.91956 1.22874 0.95784 1.00032 0.97021 1.23105 0.87823 1.00856 0.92761 1.48146 1.17707 1.62822 1.04719 1.16942 0.84808 0.78641 0.81435 1.90801 1.33032 1.52224 1.68967 1.20373 1.00503 1.10216 0.83986 1.21636 0.94166 1.04208 1.00128 1.18513 0.98421 1.05903 0.91717 1.20699 0.92468 0.95583 0.99605 1.20920 1.01701 1.03419 0.91300 1.21094 0.93212 0.98325 1.00271 1.20391 0.98970 1.03771 0.94662 1.18980 0.88880 1.02860 0.97061 1.40203 1.14514 1.37508 1.03902 1.18906 1.20053 1.00160 1.07350 0.90981 1.26075 0.93984 1.03031 0.93828 1.69704 1.33791 1.38640 1.09726 0.86226 0.79616 0.78936 0.79962 1.13466 1.21121 1.20545 1.23676 0.94872 0.95373 0.99360 1.77216 1.02450 1.10077 1.26450 0.88374 0.90028 0.87398 0.78045 0.89819 0.87737 0.90141 0.86433 0.89059 0.89541 0.78840 0.82399 0.82334 0.83875 0.88490 0.90166 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 11.47 127.77 1.47 3.17 16 2 N -0.38 -10.92 4.01 -369.57 -1.48 -12.41 16 3 C 0.06 1.75 11.40 83.54 0.95 2.70 16 4 C -0.25 -7.56 4.31 -20.14 -0.09 -7.65 16 5 C 0.21 5.70 3.25 44.59 0.14 5.84 16 6 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 7 C -0.11 -1.63 6.49 31.87 0.21 -1.42 16 8 C -0.12 -1.56 7.09 32.07 0.23 -1.34 16 9 C 0.08 1.59 5.08 86.86 0.44 2.03 16 10 N -0.60 -19.41 2.82 -796.63 -2.25 -21.66 16 11 C 0.59 27.49 7.55 86.51 0.65 28.15 16 12 O -0.57 -32.55 15.20 -4.24 -0.06 -32.61 16 13 C -0.04 -1.77 6.73 39.91 0.27 -1.50 16 14 C -0.18 -6.68 9.12 22.63 0.21 -6.48 16 15 C -0.14 -5.70 6.16 -21.33 -0.13 -5.84 16 16 C -0.07 -2.01 10.06 22.31 0.22 -1.78 16 17 C -0.15 -4.49 9.97 22.03 0.22 -4.27 16 18 C -0.11 -3.82 10.02 22.33 0.22 -3.60 16 19 C -0.16 -7.21 6.60 22.38 0.15 -7.06 16 20 C 0.03 1.72 5.02 39.06 0.20 1.91 16 21 N -0.30 -16.54 2.43 -331.35 -0.80 -17.34 16 22 C -0.34 -21.43 9.04 84.09 0.76 -20.67 16 23 H 0.07 5.18 7.51 -2.91 -0.02 5.15 16 24 C 0.04 2.30 5.15 84.95 0.44 2.74 16 25 N -0.89 -55.54 13.95 21.67 0.30 -55.24 16 26 Si 0.93 48.38 23.79 68.60 1.63 50.01 16 27 H -0.21 -9.75 5.42 99.48 0.54 -9.21 16 28 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 29 H -0.28 -15.49 6.98 99.48 0.69 -14.80 16 30 C 0.05 1.78 11.68 85.24 1.00 2.77 16 31 N -0.34 -11.98 12.58 -57.02 -0.72 -12.70 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.08 1.25 7.84 -2.39 -0.02 1.23 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.09 1.96 5.83 -2.39 -0.01 1.95 16 41 H 0.09 1.56 7.73 -2.39 -0.02 1.54 16 42 H 0.19 5.23 4.54 -2.91 -0.01 5.22 16 43 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 44 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 46 H 0.10 4.78 5.55 -2.91 -0.02 4.76 16 47 H 0.29 16.49 8.31 -92.71 -0.77 15.72 16 48 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -92.36 385.07 4.98 -87.38 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.81 Total: 26.85 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 7.55 Total: -12.28 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -4.95 Total: -119.35 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.06 Total: -32.61 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.63 Total: 50.01 kcal Total: -92.36 4.98 -87.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.161 kcal (2) G-P(sol) polarization free energy of solvation -92.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds