Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34946 * 126.04139 * 2 1 4 4 C 1.35322 * 107.74606 * 180.14633 * 3 2 1 5 5 C 1.50690 * 126.03860 * 179.87032 * 4 3 2 6 6 H 1.08996 * 110.00332 * 340.81091 * 5 4 3 7 7 C 1.54328 * 109.88412 * 101.90536 * 5 4 3 8 8 C 1.55158 * 102.94148 * 141.60970 * 7 5 4 9 9 C 1.55124 * 101.48700 * 324.33317 * 8 7 5 10 10 N 1.47030 * 109.88261 * 219.71493 * 5 4 3 11 11 C 1.34768 * 125.64920 * 61.60426 * 10 5 4 12 12 O 1.21676 * 119.99868 * 6.04351 * 11 10 5 13 13 C 1.46890 * 120.00385 * 186.03559 * 11 10 5 14 14 C 1.36126 * 125.43093 * 7.08195 * 13 11 10 15 15 C 1.41700 * 107.74280 * 179.97438 * 14 13 11 16 16 C 1.40023 * 133.34298 * 179.97438 * 15 14 13 17 17 C 1.36576 * 119.82617 * 179.76423 * 16 15 14 18 18 C 1.38855 * 120.60077 * 0.51326 * 17 16 15 19 19 C 1.37837 * 120.63444 * 359.48077 * 18 17 16 20 20 C 1.39086 * 119.81240 * 0.25393 * 19 18 17 21 21 N 1.37846 * 133.16667 * 179.97438 * 20 19 18 22 22 C 1.36888 * 125.61752 * 0.02562 * 21 20 19 23 23 H 1.07999 * 120.00451 * 215.88213 * 22 21 20 24 24 C 1.39015 * 120.00000 * 35.88255 * 22 21 20 25 25 N 1.31355 * 119.99863 * 19.48589 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 199.48050 * 24 22 21 27 27 H 1.48500 * 109.46852 * 90.00381 * 26 24 22 28 28 H 1.48500 * 109.47095 * 210.00263 * 26 24 22 29 29 H 1.48499 * 109.46880 * 330.00269 * 26 24 22 30 30 C 1.39871 * 107.91927 * 359.60681 * 4 3 2 31 31 N 1.30836 * 108.20250 * 0.24250 * 30 4 3 32 32 H 1.08997 * 109.46784 * 270.31261 * 1 2 3 33 33 H 1.08997 * 109.46409 * 30.31074 * 1 2 3 34 34 H 1.08997 * 109.47082 * 150.31287 * 1 2 3 35 35 H 1.07990 * 126.12641 * 359.97438 * 3 2 1 36 36 H 1.08990 * 110.72222 * 259.97382 * 7 5 4 37 37 H 1.09003 * 110.71773 * 23.07073 * 7 5 4 38 38 H 1.08999 * 111.00576 * 82.57652 * 8 7 5 39 39 H 1.09003 * 110.99865 * 206.39098 * 8 7 5 40 40 H 1.09005 * 110.50091 * 278.45208 * 9 8 7 41 41 H 1.09000 * 110.34398 * 156.06300 * 9 8 7 42 42 H 1.07994 * 126.12502 * 359.92483 * 14 13 11 43 43 H 1.08002 * 120.08869 * 0.02562 * 16 15 14 44 44 H 1.08005 * 119.70109 * 180.24615 * 17 16 15 45 45 H 1.08002 * 119.68167 * 179.75886 * 18 17 16 46 46 H 1.08004 * 120.09840 * 180.23482 * 19 18 17 47 47 H 0.96992 * 119.99529 * 183.22191 * 25 24 22 48 48 H 1.08003 * 125.90156 * 180.25691 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 -0.0033 5 6 4.7681 1.5450 -0.0073 6 1 4.5061 2.5480 -0.3438 7 6 5.3730 1.6087 1.4111 8 6 6.9004 1.5936 1.1384 9 6 6.9856 0.6500 -0.0899 10 7 5.7920 0.9719 -0.8932 11 6 5.6593 0.7690 -2.2189 12 8 4.6672 1.1686 -2.7992 13 6 6.7122 0.0657 -2.9634 14 6 7.7964 -0.5444 -2.4108 15 6 8.5626 -1.1011 -3.4648 16 6 9.7578 -1.8295 -3.5032 17 6 10.2615 -2.2455 -4.7026 18 6 9.6045 -1.9437 -5.8881 19 6 8.4265 -1.2281 -5.8757 20 6 7.8912 -0.7983 -4.6661 21 7 6.7599 -0.0830 -4.3366 22 6 5.8360 0.4005 -5.2234 23 1 5.3565 1.3506 -5.0395 24 6 5.5149 -0.3314 -6.3609 25 7 5.7798 -1.6170 -6.4111 26 14 4.7064 0.5133 -7.8177 27 1 5.7542 1.0182 -8.7410 28 1 3.8407 -0.4572 -8.5347 29 1 3.8817 1.6502 -7.3356 30 6 3.5347 -0.7323 0.0038 31 7 2.2891 -1.1328 0.0058 32 1 -0.3633 0.0056 1.0276 33 1 -0.3632 0.8872 -0.5187 34 1 -0.3633 -0.8928 -0.5090 35 1 1.9283 2.1192 -0.0004 36 1 5.0802 2.5302 1.9142 37 1 5.0745 0.7394 1.9970 38 1 7.2636 2.5919 0.8944 39 1 7.4445 1.1786 1.9868 40 1 6.9597 -0.3926 0.2271 41 1 7.8923 0.8515 -0.6603 42 1 8.0309 -0.5943 -1.3578 43 1 10.2779 -2.0654 -2.5865 44 1 11.1815 -2.8106 -4.7296 45 1 10.0182 -2.2767 -6.8285 46 1 7.9207 -1.0015 -6.8027 47 1 5.5988 -2.1180 -7.2216 48 1 4.4054 -1.3713 0.0072 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071847563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = 129.033921 kcal Electronic energy + Delta-G solvation = -33251.017859 eV Core-core repulsion = 29080.967226 eV Total energy + Delta-G solvation = -4170.050633 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.17035 -40.40179 -38.99935 -36.81778 -35.64446 -33.71735 -33.16489 -31.61975 -30.92124 -30.45453 -28.91625 -28.44738 -27.56012 -26.14087 -24.80069 -24.05376 -22.08272 -21.40457 -21.00812 -20.84021 -19.96877 -19.72630 -18.72684 -17.68673 -16.69796 -16.16512 -15.92964 -15.45231 -15.30587 -15.10134 -14.71098 -14.42381 -14.18444 -14.01567 -13.69090 -13.49551 -13.18777 -12.97131 -12.87754 -12.81202 -12.73437 -12.65183 -12.45721 -12.16583 -12.07318 -11.73029 -11.71087 -11.31486 -11.19112 -11.18670 -10.86044 -10.77639 -10.65620 -10.42474 -10.36975 -10.21015 -9.69494 -9.23274 -9.05287 -9.01808 -8.56869 -8.33427 -8.05682 -7.11620 -6.76734 -6.47956 -4.31083 1.91780 2.04546 2.65682 2.83152 2.92908 3.08403 3.09513 3.14231 3.25481 3.43378 3.92225 4.30593 4.56294 4.65116 4.70476 4.80122 4.91625 4.93375 5.02990 5.06823 5.17284 5.25325 5.32913 5.41244 5.45751 5.53901 5.68781 5.79070 5.83892 5.90123 5.91724 5.94896 6.02937 6.13668 6.16575 6.19806 6.35924 6.40555 6.62711 6.70457 6.81949 6.84109 6.98724 7.10495 7.14286 7.17542 7.25209 7.55828 7.65288 7.74781 7.87097 7.98761 8.07292 8.19919 8.49561 8.84370 9.08192 9.40373 10.28304 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009072 B = 0.003934 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.698398 B = 7115.924034 C = 9101.865850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.380 5.380 3 C 0.064 3.936 4 C -0.232 4.232 5 C 0.222 3.778 6 H 0.075 0.925 7 C -0.121 4.121 8 C -0.135 4.135 9 C 0.094 3.906 10 N -0.612 5.612 11 C 0.605 3.395 12 O -0.524 6.524 13 C -0.020 4.020 14 C -0.221 4.221 15 C -0.124 4.124 16 C -0.093 4.093 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.047 4.047 20 C 0.081 3.919 21 N -0.228 5.228 22 C -0.330 4.330 23 H 0.117 0.883 24 C 0.050 3.950 25 N -0.819 5.819 26 Si 0.927 3.073 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.262 1.262 30 C 0.072 3.928 31 N -0.300 5.300 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.170 0.830 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.280 0.720 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 5.361 13.953 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.163 5.163 3 C -0.082 4.082 4 C -0.244 4.244 5 C 0.117 3.883 6 H 0.093 0.907 7 C -0.159 4.159 8 C -0.173 4.173 9 C -0.029 4.029 10 N -0.348 5.348 11 C 0.397 3.603 12 O -0.399 6.399 13 C -0.138 4.138 14 C -0.248 4.248 15 C -0.129 4.129 16 C -0.112 4.112 17 C -0.175 4.175 18 C -0.178 4.178 19 C -0.066 4.066 20 C -0.034 4.034 21 N 0.112 4.888 22 C -0.458 4.458 23 H 0.134 0.866 24 C -0.162 4.162 25 N -0.448 5.448 26 Si 0.751 3.249 27 H -0.194 1.194 28 H -0.203 1.203 29 H -0.186 1.186 30 C -0.115 4.115 31 N -0.121 5.121 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.156 0.844 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.091 0.909 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.818 4.507 13.167 14.431 hybrid contribution -0.051 0.692 -0.867 1.110 sum -3.869 5.199 12.300 13.903 Atomic orbital electron populations 1.21773 0.74658 1.04420 1.02780 1.48373 1.06384 1.03919 1.57600 1.22145 0.90737 0.93162 1.02182 1.20220 0.94175 0.94226 1.15828 1.19541 0.84841 0.94680 0.89200 0.90662 1.22682 0.95220 1.02792 0.95217 1.22876 0.96030 1.00460 0.97953 1.22750 0.89821 0.98501 0.91842 1.48110 1.15541 1.64767 1.06347 1.16850 0.85510 0.78482 0.79502 1.90777 1.31426 1.50381 1.67355 1.19528 0.99518 1.10184 0.84556 1.20844 0.97719 1.08509 0.97730 1.17970 0.97169 1.04670 0.93068 1.20001 0.95056 0.99473 0.96696 1.20252 1.00403 1.04038 0.92837 1.20524 0.96965 1.03221 0.97076 1.20160 0.93705 0.96746 0.96015 1.18107 0.88127 1.02640 0.94493 1.39955 1.13527 1.32849 1.02494 1.20018 1.19473 1.05369 1.00966 0.86582 1.25621 0.96117 0.94525 0.99966 1.70056 1.41105 1.05603 1.28016 0.85909 0.79377 0.79604 0.80005 1.19359 1.20278 1.18584 1.23586 0.94847 0.94521 0.98505 1.77337 1.01756 1.08080 1.24955 0.91128 0.89729 0.89487 0.81297 0.90412 0.90464 0.90623 0.90065 0.91405 0.88896 0.84399 0.87978 0.88118 0.87864 0.86873 0.90931 0.80694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.99 11.47 59.85 0.69 1.67 16 2 N -0.38 -5.47 4.01 -68.16 -0.27 -5.74 16 3 C 0.06 0.88 11.40 -17.22 -0.20 0.69 16 4 C -0.23 -3.55 4.31 -105.06 -0.45 -4.00 16 5 C 0.22 3.10 3.26 -68.10 -0.22 2.88 16 6 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.12 -1.18 6.46 -24.89 -0.16 -1.35 16 8 C -0.14 -1.26 7.10 -24.47 -0.17 -1.43 16 9 C 0.09 1.21 5.07 -2.41 -0.01 1.20 16 10 N -0.61 -10.27 2.83 -165.63 -0.47 -10.74 16 11 C 0.60 13.62 7.54 -12.76 -0.10 13.52 16 12 O -0.52 -13.59 15.00 5.21 0.08 -13.51 16 13 C -0.02 -0.50 6.72 -82.25 -0.55 -1.05 16 14 C -0.22 -4.77 9.11 -39.02 -0.36 -5.12 16 15 C -0.12 -2.90 6.16 -106.89 -0.66 -3.56 16 16 C -0.09 -1.90 10.06 -39.51 -0.40 -2.30 16 17 C -0.16 -3.07 9.97 -39.95 -0.40 -3.47 16 18 C -0.16 -3.32 10.02 -39.50 -0.40 -3.72 16 19 C -0.05 -1.15 8.50 -39.41 -0.34 -1.48 16 20 C 0.08 2.11 6.10 -83.83 -0.51 1.60 16 21 N -0.23 -6.22 2.85 -56.08 -0.16 -6.38 16 22 C -0.33 -9.21 8.82 -15.01 -0.13 -9.34 16 23 H 0.12 3.32 6.94 -52.49 -0.36 2.95 16 24 C 0.05 1.32 4.39 -17.47 -0.08 1.25 16 25 N -0.82 -22.38 10.71 55.50 0.59 -21.78 16 26 Si 0.93 20.33 29.60 -169.99 -5.03 15.30 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 30 C 0.07 1.22 11.68 -17.37 -0.20 1.02 16 31 N -0.30 -5.24 12.58 30.63 0.39 -4.86 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 41 H 0.09 1.26 5.93 -51.93 -0.31 0.95 16 42 H 0.14 2.40 4.59 -52.49 -0.24 2.16 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 46 H 0.11 2.86 6.25 -52.48 -0.33 2.53 16 47 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.18 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -35.38 391.87 -9.87 -45.24 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.26 Total: 9.57 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -4.64 Total: -13.01 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.08 Total: -49.50 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.38 -9.87 -45.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.279 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds