Wall clock time and date at job start Tue Mar 31 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34946 * 126.04139 * 2 1 4 4 C 1.35322 * 107.74606 * 180.14633 * 3 2 1 5 5 C 1.50690 * 126.03860 * 179.87032 * 4 3 2 6 6 H 1.08996 * 110.00332 * 340.81091 * 5 4 3 7 7 C 1.54328 * 109.88412 * 101.90536 * 5 4 3 8 8 C 1.55158 * 102.94148 * 141.60970 * 7 5 4 9 9 C 1.55124 * 101.48700 * 324.33317 * 8 7 5 10 10 N 1.47030 * 109.88261 * 219.71493 * 5 4 3 11 11 C 1.34768 * 125.64920 * 61.60426 * 10 5 4 12 12 O 1.21676 * 119.99868 * 6.04351 * 11 10 5 13 13 C 1.46890 * 120.00385 * 186.03559 * 11 10 5 14 14 C 1.36126 * 125.43093 * 7.08195 * 13 11 10 15 15 C 1.41700 * 107.74280 * 179.97438 * 14 13 11 16 16 C 1.40023 * 133.34298 * 179.97438 * 15 14 13 17 17 C 1.36576 * 119.82617 * 179.76423 * 16 15 14 18 18 C 1.38855 * 120.60077 * 0.51326 * 17 16 15 19 19 C 1.37837 * 120.63444 * 359.48077 * 18 17 16 20 20 C 1.39086 * 119.81240 * 0.25393 * 19 18 17 21 21 N 1.37846 * 133.16667 * 179.97438 * 20 19 18 22 22 C 1.36888 * 125.61752 * 0.02562 * 21 20 19 23 23 H 1.07999 * 120.00451 * 215.88213 * 22 21 20 24 24 C 1.39015 * 120.00000 * 35.88255 * 22 21 20 25 25 N 1.31355 * 119.99863 * 19.48589 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 199.48050 * 24 22 21 27 27 H 1.48500 * 109.46852 * 90.00381 * 26 24 22 28 28 H 1.48500 * 109.47095 * 210.00263 * 26 24 22 29 29 H 1.48499 * 109.46880 * 330.00269 * 26 24 22 30 30 C 1.39871 * 107.91927 * 359.60681 * 4 3 2 31 31 N 1.30836 * 108.20250 * 0.24250 * 30 4 3 32 32 H 1.08997 * 109.46784 * 270.31261 * 1 2 3 33 33 H 1.08997 * 109.46409 * 30.31074 * 1 2 3 34 34 H 1.08997 * 109.47082 * 150.31287 * 1 2 3 35 35 H 1.07990 * 126.12641 * 359.97438 * 3 2 1 36 36 H 1.08990 * 110.72222 * 259.97382 * 7 5 4 37 37 H 1.09003 * 110.71773 * 23.07073 * 7 5 4 38 38 H 1.08999 * 111.00576 * 82.57652 * 8 7 5 39 39 H 1.09003 * 110.99865 * 206.39098 * 8 7 5 40 40 H 1.09005 * 110.50091 * 278.45208 * 9 8 7 41 41 H 1.09000 * 110.34398 * 156.06300 * 9 8 7 42 42 H 1.07994 * 126.12502 * 359.92483 * 14 13 11 43 43 H 1.08002 * 120.08869 * 0.02562 * 16 15 14 44 44 H 1.08005 * 119.70109 * 180.24615 * 17 16 15 45 45 H 1.08002 * 119.68167 * 179.75886 * 18 17 16 46 46 H 1.08004 * 120.09840 * 180.23482 * 19 18 17 47 47 H 0.96992 * 119.99529 * 183.22191 * 25 24 22 48 48 H 1.08003 * 125.90156 * 180.25691 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 -0.0033 5 6 4.7681 1.5450 -0.0073 6 1 4.5061 2.5480 -0.3438 7 6 5.3730 1.6087 1.4111 8 6 6.9004 1.5936 1.1384 9 6 6.9856 0.6500 -0.0899 10 7 5.7920 0.9719 -0.8932 11 6 5.6593 0.7690 -2.2189 12 8 4.6672 1.1686 -2.7992 13 6 6.7122 0.0657 -2.9634 14 6 7.7964 -0.5444 -2.4108 15 6 8.5626 -1.1011 -3.4648 16 6 9.7578 -1.8295 -3.5032 17 6 10.2615 -2.2455 -4.7026 18 6 9.6045 -1.9437 -5.8881 19 6 8.4265 -1.2281 -5.8757 20 6 7.8912 -0.7983 -4.6661 21 7 6.7599 -0.0830 -4.3366 22 6 5.8360 0.4005 -5.2234 23 1 5.3565 1.3506 -5.0395 24 6 5.5149 -0.3314 -6.3609 25 7 5.7798 -1.6170 -6.4111 26 14 4.7064 0.5133 -7.8177 27 1 5.7542 1.0182 -8.7410 28 1 3.8407 -0.4572 -8.5347 29 1 3.8817 1.6502 -7.3356 30 6 3.5347 -0.7323 0.0038 31 7 2.2891 -1.1328 0.0058 32 1 -0.3633 0.0056 1.0276 33 1 -0.3632 0.8872 -0.5187 34 1 -0.3633 -0.8928 -0.5090 35 1 1.9283 2.1192 -0.0004 36 1 5.0802 2.5302 1.9142 37 1 5.0745 0.7394 1.9970 38 1 7.2636 2.5919 0.8944 39 1 7.4445 1.1786 1.9868 40 1 6.9597 -0.3926 0.2271 41 1 7.8923 0.8515 -0.6603 42 1 8.0309 -0.5943 -1.3578 43 1 10.2779 -2.0654 -2.5865 44 1 11.1815 -2.8106 -4.7296 45 1 10.0182 -2.2767 -6.8285 46 1 7.9207 -1.0015 -6.8027 47 1 5.5988 -2.1180 -7.2216 48 1 4.4054 -1.3713 0.0072 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071847563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:11 Heat of formation + Delta-G solvation = 107.869530 kcal Electronic energy + Delta-G solvation = -33251.935616 eV Core-core repulsion = 29080.967226 eV Total energy + Delta-G solvation = -4170.968389 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.40064 -42.04676 -40.39601 -38.29200 -37.35335 -35.56246 -34.22596 -33.04505 -32.14349 -32.01604 -30.66042 -29.75779 -28.93243 -27.18197 -26.67915 -25.48321 -23.53641 -22.61541 -22.40772 -22.00029 -21.44091 -21.27743 -20.16071 -19.43048 -17.95063 -17.52935 -17.41493 -17.13280 -16.70130 -16.45070 -16.31701 -15.94031 -15.61931 -15.34112 -14.95750 -14.85629 -14.59861 -14.58327 -14.40227 -14.20032 -13.91517 -13.69290 -13.63131 -13.56407 -13.40511 -13.30266 -13.06405 -12.96727 -12.89622 -12.36685 -12.25170 -12.23919 -12.00671 -11.78185 -11.76421 -11.41699 -11.34236 -10.89633 -10.77499 -10.38047 -10.36172 -9.66978 -9.24463 -8.97269 -8.59672 -8.29568 -6.33699 0.19296 0.92365 1.11170 1.24959 1.34158 1.38948 1.50395 1.66656 1.71472 2.01823 2.16883 2.50622 2.93231 3.11829 3.40864 3.59920 3.71806 3.80481 3.96896 4.07285 4.19459 4.28478 4.31331 4.39609 4.40648 4.40881 4.44759 4.55081 4.62046 4.68970 4.76382 4.81719 4.86887 4.90417 5.04701 5.05677 5.08811 5.13762 5.17034 5.22676 5.24773 5.39949 5.48715 5.49703 5.61342 5.63933 5.77725 5.93665 5.99544 6.14431 6.29900 6.35709 6.59772 6.61942 6.69694 7.01324 7.39077 7.51141 8.35914 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009072 B = 0.003934 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.698398 B = 7115.924034 C = 9101.865850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.381 5.381 3 C 0.066 3.934 4 C -0.249 4.249 5 C 0.214 3.786 6 H 0.071 0.929 7 C -0.106 4.106 8 C -0.119 4.119 9 C 0.079 3.921 10 N -0.601 5.601 11 C 0.598 3.402 12 O -0.576 6.576 13 C -0.052 4.052 14 C -0.194 4.194 15 C -0.151 4.151 16 C -0.084 4.084 17 C -0.157 4.157 18 C -0.141 4.141 19 C -0.091 4.091 20 C 0.056 3.944 21 N -0.266 5.266 22 C -0.360 4.360 23 H 0.091 0.909 24 C 0.011 3.989 25 N -0.854 5.854 26 Si 0.990 3.010 27 H -0.254 1.254 28 H -0.268 1.268 29 H -0.268 1.268 30 C 0.052 3.948 31 N -0.340 5.340 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.206 0.794 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.182 0.818 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.131 0.869 46 H 0.091 0.909 47 H 0.282 0.718 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 5.621 16.643 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.262 4.262 5 C 0.111 3.889 6 H 0.089 0.911 7 C -0.144 4.144 8 C -0.157 4.157 9 C -0.042 4.042 10 N -0.334 5.334 11 C 0.389 3.611 12 O -0.456 6.456 13 C -0.167 4.167 14 C -0.221 4.221 15 C -0.156 4.156 16 C -0.103 4.103 17 C -0.176 4.176 18 C -0.161 4.161 19 C -0.111 4.111 20 C -0.059 4.059 21 N 0.072 4.928 22 C -0.488 4.488 23 H 0.108 0.892 24 C -0.197 4.197 25 N -0.485 5.485 26 Si 0.810 3.190 27 H -0.178 1.178 28 H -0.192 1.192 29 H -0.193 1.193 30 C -0.133 4.133 31 N -0.163 5.163 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.199 0.801 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.149 0.851 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.000 4.765 15.927 16.745 hybrid contribution -0.495 0.563 -1.524 1.699 sum -2.495 5.328 14.403 15.558 Atomic orbital electron populations 1.22166 0.72075 1.05406 1.04870 1.48767 1.07906 1.03271 1.56400 1.22745 0.90345 0.94506 1.00544 1.20430 0.95437 0.93677 1.16607 1.19894 0.84254 0.93783 0.91010 0.91135 1.22664 0.95092 1.04466 0.92222 1.22866 0.95961 0.99971 0.96886 1.23062 0.87890 1.00425 0.92847 1.48123 1.17625 1.62806 1.04878 1.16882 0.84549 0.78373 0.81324 1.90723 1.33065 1.52723 1.69062 1.20247 1.01000 1.11039 0.84451 1.21387 0.95662 1.05600 0.99442 1.18495 0.98700 1.05957 0.92419 1.20499 0.93539 0.97332 0.98922 1.20749 1.01588 1.03539 0.91677 1.20976 0.95165 1.00558 0.99390 1.20228 0.95802 1.00030 0.95056 1.18690 0.88385 1.02575 0.96202 1.40140 1.14312 1.34993 1.03371 1.19865 1.21011 1.05170 1.02778 0.89150 1.26424 0.96370 0.94958 1.01924 1.70132 1.42956 1.06680 1.28717 0.85014 0.78673 0.78380 0.76905 1.17837 1.19240 1.19253 1.23629 0.94784 0.95482 0.99428 1.77226 1.02436 1.10131 1.26466 0.88458 0.87207 0.90062 0.77767 0.87577 0.90032 0.89936 0.86709 0.90228 0.89485 0.80126 0.83712 0.83527 0.85084 0.89093 0.90798 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 11.47 127.77 1.47 3.12 16 2 N -0.38 -10.83 4.01 -369.57 -1.48 -12.31 16 3 C 0.07 1.77 11.40 83.54 0.95 2.72 16 4 C -0.25 -7.62 4.31 -20.15 -0.09 -7.71 16 5 C 0.21 5.81 3.26 44.59 0.15 5.96 16 6 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 7 C -0.11 -1.74 6.46 31.78 0.21 -1.54 16 8 C -0.12 -1.76 7.10 32.06 0.23 -1.53 16 9 C 0.08 1.88 5.07 86.93 0.44 2.32 16 10 N -0.60 -20.23 2.83 -796.18 -2.25 -22.48 16 11 C 0.60 28.29 7.54 86.51 0.65 28.95 16 12 O -0.58 -32.06 15.00 -4.27 -0.06 -32.13 16 13 C -0.05 -2.63 6.72 39.91 0.27 -2.37 16 14 C -0.19 -8.34 9.11 22.63 0.21 -8.13 16 15 C -0.15 -6.99 6.16 -21.34 -0.13 -7.12 16 16 C -0.08 -3.16 10.06 22.31 0.22 -2.94 16 17 C -0.16 -5.60 9.97 22.03 0.22 -5.38 16 18 C -0.14 -5.77 10.02 22.32 0.22 -5.54 16 19 C -0.09 -4.63 8.50 22.38 0.19 -4.44 16 20 C 0.06 3.03 6.10 39.06 0.24 3.27 16 21 N -0.27 -15.44 2.85 -331.34 -0.94 -16.38 16 22 C -0.36 -21.81 8.82 84.09 0.74 -21.07 16 23 H 0.09 5.72 6.94 -2.91 -0.02 5.70 16 24 C 0.01 0.64 4.39 84.95 0.37 1.01 16 25 N -0.85 -49.70 10.71 21.67 0.23 -49.46 16 26 Si 0.99 44.40 29.60 68.60 2.03 46.43 16 27 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 C 0.05 1.82 11.68 85.24 1.00 2.81 16 31 N -0.34 -12.22 12.58 -57.02 -0.72 -12.93 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.21 3.74 8.06 -2.92 -0.02 3.72 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.33 7.84 -2.39 -0.02 1.31 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.73 7.68 -2.38 -0.02 1.72 16 41 H 0.09 2.18 5.93 -2.39 -0.01 2.16 16 42 H 0.18 5.88 4.59 -2.91 -0.01 5.87 16 43 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 46 H 0.09 4.91 6.25 -2.91 -0.02 4.89 16 47 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.17 5.77 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -86.95 391.87 5.35 -81.60 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.99 Total: 35.27 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 7.55 Total: -17.61 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.16 Total: -113.57 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.06 Total: -32.13 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -86.95 5.35 -81.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.473 kcal (2) G-P(sol) polarization free energy of solvation -86.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds