Wall clock time and date at job start Tue Mar 31 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48490 * 109.47106 * 274.65779 * 3 2 1 5 5 H 1.48501 * 109.47126 * 34.66118 * 3 2 1 6 6 H 1.48501 * 109.46771 * 154.65687 * 3 2 1 7 7 C 1.39938 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99939 * 162.20079 * 7 2 1 9 9 C 1.41433 * 120.00300 * 342.19916 * 7 2 1 10 10 C 1.40793 * 120.17678 * 335.20190 * 9 7 2 11 11 C 1.37703 * 120.04109 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.41286 * 359.74261 * 11 10 9 13 13 C 1.39882 * 120.35308 * 0.51982 * 12 11 10 14 14 C 1.47889 * 120.02132 * 179.76328 * 13 12 11 15 15 O 1.21551 * 119.99785 * 179.71544 * 14 13 12 16 16 N 1.34773 * 119.99852 * 359.72213 * 14 13 12 17 17 C 1.46506 * 119.99648 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.85769 * 37.33287 * 17 16 14 19 19 C 1.54629 * 110.96737 * 273.54143 * 17 16 14 20 20 C 1.51287 * 104.19197 * 217.08444 * 19 17 16 21 21 O 1.21287 * 124.93689 * 196.27200 * 20 19 17 22 22 N 1.34417 * 110.11865 * 16.25514 * 20 19 17 23 23 C 1.46491 * 124.34864 * 180.40612 * 22 20 19 24 24 C 1.50703 * 109.47116 * 90.02150 * 23 22 20 25 25 C 1.38235 * 119.99697 * 89.99881 * 24 23 22 26 26 C 1.38233 * 120.00265 * 179.97438 * 25 24 23 27 27 C 1.38236 * 120.00077 * 0.02874 * 26 25 24 28 28 C 1.38240 * 119.99759 * 0.25002 * 27 26 25 29 29 C 1.38230 * 120.00652 * 270.02240 * 24 23 22 30 30 C 1.46755 * 111.29916 * 0.67161 * 22 20 19 31 31 C 1.39030 * 119.95305 * 359.48098 * 13 12 11 32 32 H 0.96997 * 119.99360 * 0.02562 * 1 2 3 33 33 H 1.07996 * 119.97748 * 359.95583 * 10 9 7 34 34 H 1.07993 * 119.79788 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.82185 * 180.27715 * 12 11 10 36 36 H 0.96995 * 120.00728 * 359.97438 * 16 14 13 37 37 H 1.08996 * 110.48739 * 98.40847 * 19 17 16 38 38 H 1.08999 * 110.48852 * 335.76139 * 19 17 16 39 39 H 1.08997 * 109.47475 * 330.02778 * 23 22 20 40 40 H 1.09001 * 109.47569 * 210.02247 * 23 22 20 41 41 H 1.08000 * 120.00265 * 0.02562 * 25 24 23 42 42 H 1.07999 * 120.00653 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00665 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.00108 * 179.72810 * 28 27 26 45 45 H 1.08009 * 119.99733 * 359.97438 * 29 24 23 46 46 H 1.08997 * 110.24877 * 101.71767 * 30 22 20 47 47 H 1.08999 * 110.24783 * 223.71769 * 30 22 20 48 48 H 1.08001 * 120.20510 * 180.28320 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3914 2.1032 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5993 7 6 2.0080 -1.2119 0.0005 8 1 3.0492 -1.2345 -0.2854 9 6 1.3516 -2.4073 0.3755 10 6 0.2243 -2.3615 1.2178 11 6 -0.4129 -3.5270 1.5807 12 6 0.0441 -4.7485 1.1182 13 6 1.1658 -4.8141 0.2850 14 6 1.6510 -6.1240 -0.2008 15 8 2.6227 -6.1801 -0.9290 16 7 1.0158 -7.2553 0.1637 17 6 1.4969 -8.5529 -0.3171 18 1 2.5860 -8.5727 -0.3566 19 6 0.8869 -8.8925 -1.6968 20 6 0.6487 -10.3854 -1.6397 21 8 0.4443 -11.0935 -2.6030 22 7 0.6968 -10.8129 -0.3663 23 6 0.5162 -12.2073 0.0449 24 6 1.8526 -12.9037 0.0602 25 6 2.6178 -12.9053 1.2115 26 6 3.8435 -13.5445 1.2258 27 6 4.3042 -14.1815 0.0888 28 6 3.5415 -14.1749 -1.0642 29 6 2.3135 -13.5403 -1.0769 30 6 0.9473 -9.7023 0.5598 31 6 1.8206 -3.6467 -0.0908 32 1 -0.4849 0.8401 -0.0004 33 1 -0.1406 -1.4117 1.5797 34 1 -1.2775 -3.4873 2.2266 35 1 -0.4656 -5.6563 1.4052 36 1 0.2406 -7.2106 0.7450 37 1 1.5883 -8.6484 -2.4946 38 1 -0.0542 -8.3612 -1.8391 39 1 -0.1475 -12.7104 -0.6583 40 1 0.0789 -12.2382 1.0429 41 1 2.2578 -12.4080 2.1000 42 1 4.4416 -13.5455 2.1251 43 1 5.2619 -14.6805 0.0998 44 1 3.9033 -14.6688 -1.9538 45 1 1.7155 -13.5390 -1.9764 46 1 0.0197 -9.3995 1.0454 47 1 1.6871 -9.9928 1.3058 48 1 2.6843 -3.6923 -0.7377 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071847737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:40 Heat of formation + Delta-G solvation = -22.897356 kcal Electronic energy + Delta-G solvation = -30751.302529 eV Core-core repulsion = 26542.370910 eV Total energy + Delta-G solvation = -4208.931618 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.92131 -39.49732 -39.04409 -37.23680 -36.55550 -34.74078 -33.80680 -32.66252 -31.19283 -30.56559 -29.94111 -29.40447 -27.68309 -26.26989 -25.35691 -23.27613 -22.81625 -21.88092 -21.52269 -20.68462 -20.18178 -19.52463 -17.97902 -17.35587 -16.98514 -16.64118 -16.17372 -15.86452 -15.59165 -15.20663 -15.12618 -14.84067 -14.56457 -14.50554 -13.94465 -13.80030 -13.74538 -13.61883 -13.50802 -13.21971 -12.95081 -12.85701 -12.79735 -12.47805 -12.39698 -11.97120 -11.71740 -11.59414 -11.36359 -11.27580 -11.22474 -11.15219 -10.77560 -10.59713 -10.26875 -10.16184 -9.62080 -9.28573 -9.26827 -9.21255 -9.19374 -9.01793 -8.93191 -7.70263 -7.60881 -6.88326 -4.48294 0.94734 1.11244 2.07421 2.41020 2.67557 2.68963 3.02864 3.04934 3.11045 3.33221 3.57299 3.70710 3.86893 4.13015 4.27478 4.42192 4.51368 4.57140 4.69440 4.72925 4.76200 4.85317 4.89753 5.13514 5.17105 5.24347 5.33392 5.35478 5.43590 5.54233 5.66292 5.74024 5.77204 5.83549 6.02646 6.14574 6.15558 6.16501 6.22076 6.27590 6.56059 6.69009 6.81815 6.82090 6.86523 6.92097 7.09621 7.28519 7.54187 7.69910 7.83693 7.88335 7.95154 8.10448 8.46347 8.66394 8.74407 8.77692 10.07206 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.001684 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.645416 B =16627.764206 C =16847.385149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.142 4.142 11 C -0.111 4.111 12 C -0.210 4.210 13 C -0.119 4.119 14 C 0.569 3.431 15 O -0.545 6.545 16 N -0.727 5.727 17 C 0.141 3.859 18 H 0.109 0.891 19 C -0.169 4.169 20 C 0.525 3.475 21 O -0.529 6.529 22 N -0.615 5.615 23 C 0.166 3.834 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.096 4.096 30 C 0.098 3.902 31 C -0.154 4.154 32 H 0.282 0.718 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.403 0.597 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -22.145 5.167 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.162 4.162 11 C -0.129 4.129 12 C -0.230 4.230 13 C -0.122 4.122 14 C 0.360 3.640 15 O -0.423 6.423 16 N -0.382 5.382 17 C 0.035 3.965 18 H 0.127 0.873 19 C -0.211 4.211 20 C 0.313 3.687 21 O -0.405 6.405 22 N -0.349 5.349 23 C 0.045 3.955 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.115 4.115 30 C -0.025 4.025 31 C -0.174 4.174 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.240 0.760 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.863 -22.451 4.135 22.845 hybrid contribution -0.091 0.793 0.310 0.857 sum 0.772 -21.658 4.446 22.123 Atomic orbital electron populations 1.69802 1.07625 1.29468 1.34871 1.25922 0.94762 1.01479 0.92118 0.86271 0.80773 0.80411 0.79187 1.19469 1.19982 1.18306 1.19609 0.98298 0.91020 1.39780 0.90068 1.17595 0.91572 0.91863 0.89362 1.21508 0.98507 0.97106 0.99082 1.20610 0.99073 0.93002 1.00262 1.20370 0.99838 0.96448 1.06360 1.19253 0.99017 0.91118 1.02788 1.18899 0.81870 0.84256 0.78954 1.90700 1.27170 1.87453 1.37002 1.45899 1.34189 1.04683 1.53387 1.21637 1.00376 0.82812 0.91694 0.87349 1.22885 1.04694 0.93043 1.00431 1.20929 0.74979 0.90425 0.82332 1.90705 1.49322 1.62180 1.38271 1.48283 1.72087 1.06978 1.07548 1.20260 0.93606 0.79755 1.01890 1.20227 0.97543 0.99255 0.94263 1.21051 0.94649 0.99034 0.97597 1.21148 0.96265 0.98269 0.98490 1.21209 0.99697 0.99290 0.93239 1.21193 0.94804 0.99813 0.98249 1.21194 0.96141 0.96341 0.97818 1.22344 1.01525 0.86023 0.92638 1.21211 1.02123 0.91177 1.02929 0.90692 0.86069 0.88780 0.89170 0.76035 0.87304 0.87126 0.88976 0.89272 0.86076 0.85989 0.86113 0.86024 0.85650 0.90181 0.89503 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 10.97 55.55 0.61 -18.96 16 2 C 0.08 1.82 5.13 -17.34 -0.09 1.73 16 3 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.73 9.05 -37.73 -0.34 -12.08 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.10 2.51 5.57 -106.87 -0.59 1.92 16 10 C -0.14 -3.43 8.69 -38.81 -0.34 -3.77 16 11 C -0.11 -2.32 10.01 -39.72 -0.40 -2.72 16 12 C -0.21 -4.04 9.55 -38.91 -0.37 -4.41 16 13 C -0.12 -2.51 5.87 -105.04 -0.62 -3.12 16 14 C 0.57 10.64 7.77 -12.31 -0.10 10.54 16 15 O -0.55 -11.83 16.08 5.32 0.09 -11.74 16 16 N -0.73 -9.65 5.13 -53.05 -0.27 -9.92 16 17 C 0.14 1.60 3.44 -66.19 -0.23 1.38 16 18 H 0.11 1.39 7.72 -51.93 -0.40 0.98 16 19 C -0.17 -2.06 6.59 -26.74 -0.18 -2.23 16 20 C 0.53 6.61 8.02 -10.86 -0.09 6.52 16 21 O -0.53 -8.35 17.59 5.55 0.10 -8.25 16 22 N -0.61 -5.86 2.91 -173.68 -0.51 -6.37 16 23 C 0.17 1.33 6.06 -5.20 -0.03 1.30 16 24 C -0.11 -0.99 5.46 -104.62 -0.57 -1.56 16 25 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 26 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 27 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 28 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 29 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 30 C 0.10 0.79 7.06 -3.03 -0.02 0.77 16 31 C -0.15 -3.73 9.34 -38.44 -0.36 -4.09 16 32 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 33 H 0.12 3.01 6.17 -52.49 -0.32 2.69 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.09 1.37 6.38 -52.49 -0.33 1.03 16 36 H 0.40 4.43 6.38 -40.82 -0.26 4.17 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 40 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 46 H 0.08 0.51 7.77 -51.93 -0.40 0.10 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.11 2.66 7.64 -52.49 -0.40 2.26 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -30.85 407.68 -11.46 -42.31 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.30 Total: 10.31 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -6.28 Total: -16.53 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.17 Total: -35.25 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -19.99 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.85 -11.46 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.409 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds