Wall clock time and date at job start Tue Mar 31 2020 05:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48490 * 109.47106 * 274.65779 * 3 2 1 5 5 H 1.48501 * 109.47126 * 34.66118 * 3 2 1 6 6 H 1.48501 * 109.46771 * 154.65687 * 3 2 1 7 7 C 1.39938 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99939 * 162.20079 * 7 2 1 9 9 C 1.41433 * 120.00300 * 342.19916 * 7 2 1 10 10 C 1.40793 * 120.17678 * 335.20190 * 9 7 2 11 11 C 1.37703 * 120.04109 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.41286 * 359.74261 * 11 10 9 13 13 C 1.39882 * 120.35308 * 0.51982 * 12 11 10 14 14 C 1.47889 * 120.02132 * 179.76328 * 13 12 11 15 15 O 1.21551 * 119.99785 * 179.71544 * 14 13 12 16 16 N 1.34773 * 119.99852 * 359.72213 * 14 13 12 17 17 C 1.46506 * 119.99648 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.85769 * 37.33287 * 17 16 14 19 19 C 1.54629 * 110.96737 * 273.54143 * 17 16 14 20 20 C 1.51287 * 104.19197 * 217.08444 * 19 17 16 21 21 O 1.21287 * 124.93689 * 196.27200 * 20 19 17 22 22 N 1.34417 * 110.11865 * 16.25514 * 20 19 17 23 23 C 1.46491 * 124.34864 * 180.40612 * 22 20 19 24 24 C 1.50703 * 109.47116 * 90.02150 * 23 22 20 25 25 C 1.38235 * 119.99697 * 89.99881 * 24 23 22 26 26 C 1.38233 * 120.00265 * 179.97438 * 25 24 23 27 27 C 1.38236 * 120.00077 * 0.02874 * 26 25 24 28 28 C 1.38240 * 119.99759 * 0.25002 * 27 26 25 29 29 C 1.38230 * 120.00652 * 270.02240 * 24 23 22 30 30 C 1.46755 * 111.29916 * 0.67161 * 22 20 19 31 31 C 1.39030 * 119.95305 * 359.48098 * 13 12 11 32 32 H 0.96997 * 119.99360 * 0.02562 * 1 2 3 33 33 H 1.07996 * 119.97748 * 359.95583 * 10 9 7 34 34 H 1.07993 * 119.79788 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.82185 * 180.27715 * 12 11 10 36 36 H 0.96995 * 120.00728 * 359.97438 * 16 14 13 37 37 H 1.08996 * 110.48739 * 98.40847 * 19 17 16 38 38 H 1.08999 * 110.48852 * 335.76139 * 19 17 16 39 39 H 1.08997 * 109.47475 * 330.02778 * 23 22 20 40 40 H 1.09001 * 109.47569 * 210.02247 * 23 22 20 41 41 H 1.08000 * 120.00265 * 0.02562 * 25 24 23 42 42 H 1.07999 * 120.00653 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00665 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.00108 * 179.72810 * 28 27 26 45 45 H 1.08009 * 119.99733 * 359.97438 * 29 24 23 46 46 H 1.08997 * 110.24877 * 101.71767 * 30 22 20 47 47 H 1.08999 * 110.24783 * 223.71769 * 30 22 20 48 48 H 1.08001 * 120.20510 * 180.28320 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3914 2.1032 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5993 7 6 2.0080 -1.2119 0.0005 8 1 3.0492 -1.2345 -0.2854 9 6 1.3516 -2.4073 0.3755 10 6 0.2243 -2.3615 1.2178 11 6 -0.4129 -3.5270 1.5807 12 6 0.0441 -4.7485 1.1182 13 6 1.1658 -4.8141 0.2850 14 6 1.6510 -6.1240 -0.2008 15 8 2.6227 -6.1801 -0.9290 16 7 1.0158 -7.2553 0.1637 17 6 1.4969 -8.5529 -0.3171 18 1 2.5860 -8.5727 -0.3566 19 6 0.8869 -8.8925 -1.6968 20 6 0.6487 -10.3854 -1.6397 21 8 0.4443 -11.0935 -2.6030 22 7 0.6968 -10.8129 -0.3663 23 6 0.5162 -12.2073 0.0449 24 6 1.8526 -12.9037 0.0602 25 6 2.6178 -12.9053 1.2115 26 6 3.8435 -13.5445 1.2258 27 6 4.3042 -14.1815 0.0888 28 6 3.5415 -14.1749 -1.0642 29 6 2.3135 -13.5403 -1.0769 30 6 0.9473 -9.7023 0.5598 31 6 1.8206 -3.6467 -0.0908 32 1 -0.4849 0.8401 -0.0004 33 1 -0.1406 -1.4117 1.5797 34 1 -1.2775 -3.4873 2.2266 35 1 -0.4656 -5.6563 1.4052 36 1 0.2406 -7.2106 0.7450 37 1 1.5883 -8.6484 -2.4946 38 1 -0.0542 -8.3612 -1.8391 39 1 -0.1475 -12.7104 -0.6583 40 1 0.0789 -12.2382 1.0429 41 1 2.2578 -12.4080 2.1000 42 1 4.4416 -13.5455 2.1251 43 1 5.2619 -14.6805 0.0998 44 1 3.9033 -14.6688 -1.9538 45 1 1.7155 -13.5390 -1.9764 46 1 0.0197 -9.3995 1.0454 47 1 1.6871 -9.9928 1.3058 48 1 2.6843 -3.6923 -0.7377 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071847737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:34 Heat of formation + Delta-G solvation = -39.632850 kcal Electronic energy + Delta-G solvation = -30752.028234 eV Core-core repulsion = 26542.370910 eV Total energy + Delta-G solvation = -4209.657324 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -41.86706 -40.72949 -39.89535 -38.86369 -37.68255 -35.80475 -35.53447 -33.65299 -31.87573 -31.79519 -31.62218 -30.69566 -28.56167 -27.28766 -26.89849 -24.64239 -23.50655 -22.82310 -22.52417 -22.26465 -21.56290 -20.53289 -19.54602 -18.15532 -18.02811 -17.70053 -17.45859 -16.92741 -16.77783 -16.44494 -16.21864 -15.97366 -15.79903 -15.72828 -15.19584 -15.04599 -14.82372 -14.54465 -14.44598 -14.36074 -14.27502 -14.16306 -13.70596 -13.49588 -13.45510 -13.03577 -12.99642 -12.84105 -12.81642 -12.53963 -12.41210 -12.22533 -12.10924 -11.95289 -11.87136 -11.37742 -11.23195 -11.05388 -10.84240 -10.20890 -9.90453 -9.83234 -9.68603 -9.46356 -9.37174 -8.67032 -6.37773 0.31704 0.39737 0.48859 0.95962 1.38840 1.43682 1.46413 1.53581 1.84993 2.10743 2.18651 2.23274 2.76598 2.93515 3.25890 3.43522 3.70193 3.73750 3.81346 3.91345 3.96933 4.05011 4.14190 4.26585 4.29469 4.44116 4.47557 4.55058 4.56996 4.57700 4.69955 4.72149 4.78242 4.84310 5.01082 5.07884 5.07925 5.14126 5.19963 5.28798 5.40273 5.43001 5.51565 5.54613 5.61150 5.62398 5.82681 5.97968 6.00039 6.03386 6.09736 6.25093 6.58901 6.63707 6.89281 6.94053 7.02203 7.26921 8.30978 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.001684 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.645416 B =16627.764206 C =16847.385149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.069 0.931 9 C 0.070 3.930 10 C -0.162 4.162 11 C -0.111 4.111 12 C -0.183 4.183 13 C -0.123 4.123 14 C 0.571 3.429 15 O -0.583 6.583 16 N -0.698 5.698 17 C 0.142 3.858 18 H 0.094 0.906 19 C -0.169 4.169 20 C 0.522 3.478 21 O -0.570 6.570 22 N -0.603 5.603 23 C 0.165 3.835 24 C -0.121 4.121 25 C -0.105 4.105 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.138 4.138 29 C -0.120 4.120 30 C 0.106 3.894 31 C -0.187 4.187 32 H 0.290 0.710 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.419 0.581 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -23.692 8.333 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.532 4.532 8 H 0.087 0.913 9 C 0.067 3.933 10 C -0.181 4.181 11 C -0.129 4.129 12 C -0.202 4.202 13 C -0.126 4.126 14 C 0.361 3.639 15 O -0.464 6.464 16 N -0.352 5.352 17 C 0.036 3.964 18 H 0.112 0.888 19 C -0.210 4.210 20 C 0.310 3.690 21 O -0.449 6.449 22 N -0.336 5.336 23 C 0.044 3.956 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.156 4.156 29 C -0.139 4.139 30 C -0.016 4.016 31 C -0.207 4.207 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.259 0.741 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.475 -24.043 7.361 25.149 hybrid contribution 0.282 1.048 -0.646 1.263 sum -0.193 -22.995 6.715 23.957 Atomic orbital electron populations 1.69827 1.08702 1.30696 1.35603 1.26659 0.95555 1.04215 0.91226 0.85240 0.79248 0.76233 0.79306 1.19093 1.18462 1.18559 1.19786 0.98229 0.92669 1.42540 0.91318 1.17884 0.92699 0.92336 0.90338 1.21537 0.98767 0.98093 0.99736 1.21032 0.99541 0.92330 1.00003 1.20919 0.97999 0.98092 1.03208 1.19550 0.99145 0.91419 1.02509 1.18573 0.81728 0.84852 0.78777 1.90695 1.28974 1.87945 1.38736 1.45554 1.33617 1.03885 1.52187 1.21681 0.99761 0.82840 0.92158 0.88770 1.22813 1.04423 0.93323 1.00442 1.20934 0.74853 0.90209 0.83003 1.90687 1.51476 1.62931 1.39856 1.48318 1.70492 1.08143 1.06651 1.20450 0.93239 0.78372 1.03492 1.20349 0.98109 0.99422 0.94334 1.21364 0.94364 0.98652 0.97932 1.21515 0.96576 0.97590 0.99072 1.21500 1.00321 0.99318 0.93069 1.21382 0.94831 1.00145 0.99199 1.21242 0.96749 0.97883 0.97982 1.22490 1.03737 0.83727 0.91668 1.21175 1.02702 0.92560 1.04288 0.89912 0.87460 0.85128 0.83536 0.74055 0.89404 0.86697 0.90109 0.85491 0.83313 0.83810 0.84384 0.85416 0.87471 0.86775 0.86891 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.66 10.97 21.83 0.24 -41.42 16 2 C 0.04 1.92 5.13 85.25 0.44 2.36 16 3 Si 0.98 37.97 29.60 68.60 2.03 40.00 16 4 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.31 9.05 23.47 0.21 -27.10 16 8 H 0.07 3.71 7.91 -2.91 -0.02 3.69 16 9 C 0.07 3.70 5.57 -21.32 -0.12 3.59 16 10 C -0.16 -7.86 8.69 22.77 0.20 -7.66 16 11 C -0.11 -4.34 10.01 22.18 0.22 -4.12 16 12 C -0.18 -6.35 9.55 22.70 0.22 -6.13 16 13 C -0.12 -5.08 5.87 -20.13 -0.12 -5.20 16 14 C 0.57 20.61 7.77 86.80 0.67 21.29 16 15 O -0.58 -25.66 16.08 -3.88 -0.06 -25.72 16 16 N -0.70 -16.10 5.13 -440.04 -2.26 -18.36 16 17 C 0.14 2.84 3.44 46.11 0.16 3.00 16 18 H 0.09 2.26 7.72 -2.38 -0.02 2.24 16 19 C -0.17 -3.96 6.59 30.59 0.20 -3.76 16 20 C 0.52 12.68 8.02 87.90 0.70 13.39 16 21 O -0.57 -18.40 17.59 -3.05 -0.05 -18.46 16 22 N -0.60 -9.76 2.91 -821.98 -2.40 -12.15 16 23 C 0.16 2.17 6.06 85.64 0.52 2.69 16 24 C -0.12 -1.91 5.46 -19.87 -0.11 -2.02 16 25 C -0.10 -1.29 9.70 22.27 0.22 -1.07 16 26 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 27 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 28 C -0.14 -2.40 10.05 22.27 0.22 -2.17 16 29 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 30 C 0.11 1.19 7.06 86.90 0.61 1.81 16 31 C -0.19 -9.42 9.34 23.01 0.21 -9.21 16 32 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 33 H 0.11 5.45 6.17 -2.91 -0.02 5.43 16 34 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.15 3.41 6.38 -2.91 -0.02 3.40 16 36 H 0.42 6.80 6.38 -92.71 -0.59 6.21 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.11 2.58 8.08 -2.39 -0.02 2.56 16 39 H 0.08 1.28 7.87 -2.39 -0.02 1.27 16 40 H 0.13 0.74 8.09 -2.39 -0.02 0.72 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.11 2.41 8.06 -2.91 -0.02 2.38 16 46 H 0.11 0.65 7.77 -2.39 -0.02 0.63 16 47 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 4.51 7.64 -2.91 -0.02 4.48 16 Total: -1.00 -73.96 407.68 3.04 -70.93 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.40 Total: 30.63 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 5.13 Total: -25.45 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -4.42 Total: -71.93 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.12 Total: -44.18 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -73.96 3.04 -70.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.296 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds