Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48503 * 109.46862 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47408 * 119.99813 * 3 2 1 7 7 C 1.39935 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 197.72955 * 7 2 1 9 9 C 1.41442 * 120.00172 * 17.73268 * 7 2 1 10 10 C 1.40782 * 120.17646 * 204.35808 * 9 7 2 11 11 C 1.37717 * 120.04077 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.40950 * 0.02562 * 11 10 9 13 13 C 1.39883 * 120.35612 * 359.97239 * 12 11 10 14 14 C 1.47887 * 120.02135 * 180.02562 * 13 12 11 15 15 O 1.21546 * 119.99789 * 179.97438 * 14 13 12 16 16 N 1.34776 * 120.00259 * 0.02562 * 14 13 12 17 17 C 1.46494 * 120.00336 * 180.27209 * 16 14 13 18 18 H 1.09004 * 110.85753 * 328.51891 * 17 16 14 19 19 C 1.54629 * 110.97198 * 92.34494 * 17 16 14 20 20 C 1.51278 * 104.19883 * 142.91633 * 19 17 16 21 21 O 1.21278 * 124.94575 * 163.70985 * 20 19 17 22 22 N 1.34423 * 110.11398 * 343.75416 * 20 19 17 23 23 C 1.46501 * 124.34670 * 179.57091 * 22 20 19 24 24 C 1.50704 * 109.47065 * 270.01922 * 23 22 20 25 25 C 1.38233 * 119.99946 * 269.73167 * 24 23 22 26 26 C 1.38241 * 119.99961 * 179.78949 * 25 24 23 27 27 C 1.38240 * 119.99595 * 0.43544 * 26 25 24 28 28 C 1.38237 * 119.99983 * 359.81536 * 27 26 25 29 29 C 1.38231 * 120.00202 * 359.97438 * 28 27 26 30 30 C 1.46759 * 111.30252 * 359.58718 * 22 20 19 31 31 C 1.39027 * 119.95226 * 0.28313 * 13 12 11 32 32 H 0.96993 * 119.99741 * 0.02562 * 1 2 3 33 33 H 1.08001 * 119.97944 * 0.02562 * 10 9 7 34 34 H 1.07998 * 119.79380 * 179.97438 * 11 10 9 35 35 H 1.07991 * 119.82072 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99736 * 0.02562 * 16 14 13 37 37 H 1.08997 * 110.48838 * 261.60208 * 19 17 16 38 38 H 1.09004 * 110.48064 * 24.24257 * 19 17 16 39 39 H 1.08999 * 109.47180 * 30.02025 * 23 22 20 40 40 H 1.09005 * 109.46899 * 150.02261 * 23 22 20 41 41 H 1.07998 * 120.00282 * 359.97438 * 25 24 23 42 42 H 1.07991 * 120.00265 * 180.27344 * 26 25 24 43 43 H 1.07997 * 119.99825 * 179.83654 * 27 26 25 44 44 H 1.08006 * 119.99725 * 180.02562 * 28 27 26 45 45 H 1.08002 * 120.00226 * 179.97438 * 29 28 27 46 46 H 1.08998 * 110.24776 * 258.01952 * 30 22 20 47 47 H 1.08998 * 110.24616 * 136.01550 * 30 22 20 48 48 H 1.07996 * 120.20222 * 179.70467 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2854 9 6 1.3512 -2.4079 -0.3720 10 6 1.8275 -3.6499 0.0889 11 6 1.1861 -4.8127 -0.2760 12 6 0.0724 -4.7706 -1.0962 13 6 -0.4153 -3.5458 -1.5638 14 6 -1.6065 -3.5093 -2.4395 15 8 -2.0301 -2.4448 -2.8451 16 7 -2.2229 -4.6564 -2.7869 17 6 -3.3993 -4.6208 -3.6592 18 1 -3.9701 -3.7053 -3.5037 19 6 -2.9928 -4.7751 -5.1431 20 6 -4.0977 -5.6149 -5.7451 21 8 -4.3118 -5.7331 -6.9329 22 7 -4.8082 -6.2105 -4.7717 23 6 -5.9573 -7.0884 -5.0063 24 6 -7.2201 -6.2664 -5.0342 25 6 -7.9272 -6.0459 -3.8671 26 6 -9.0832 -5.2882 -3.8920 27 6 -9.5369 -4.7586 -5.0857 28 6 -8.8324 -4.9835 -6.2536 29 6 -7.6742 -5.7375 -6.2280 30 6 -4.2852 -5.8679 -3.4440 31 6 0.2238 -2.3632 -1.2090 32 1 -0.4849 0.8400 -0.0004 33 1 2.6964 -3.6909 0.7289 34 1 1.5551 -5.7634 0.0795 35 1 -0.4230 -5.6883 -1.3767 36 1 -1.8854 -5.5059 -2.4622 37 1 -2.9463 -3.8006 -5.6292 38 1 -2.0352 -5.2893 -5.2247 39 1 -5.8352 -7.5995 -5.9613 40 1 -6.0211 -7.8252 -4.2054 41 1 -7.5750 -6.4630 -2.9353 42 1 -9.6333 -5.1122 -2.9795 43 1 -10.4414 -4.1688 -5.1056 44 1 -9.1867 -4.5693 -7.1861 45 1 -7.1241 -5.9136 -7.1406 46 1 -3.6888 -6.6907 -3.0497 47 1 -5.1049 -5.6355 -2.7641 48 1 -0.1465 -1.4156 -1.5716 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071847738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = -22.435100 kcal Electronic energy + Delta-G solvation = -31040.602877 eV Core-core repulsion = 26831.691303 eV Total energy + Delta-G solvation = -4208.911573 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.87969 -39.43802 -38.98850 -37.20346 -36.50319 -34.68302 -33.80225 -32.61313 -31.15913 -30.66429 -29.66975 -29.44882 -27.64688 -26.24669 -25.33654 -23.23880 -22.77790 -21.84095 -21.41987 -20.90105 -20.00977 -19.44131 -17.88814 -17.33223 -16.93450 -16.61990 -16.23153 -15.73518 -15.57407 -15.17867 -15.07443 -14.77779 -14.54966 -14.45244 -13.89606 -13.74766 -13.71065 -13.58323 -13.46029 -13.18448 -12.89786 -12.80218 -12.69564 -12.55743 -12.36226 -11.94052 -11.68785 -11.56424 -11.33651 -11.24163 -11.19221 -11.11490 -10.80199 -10.55205 -10.15447 -10.08814 -9.75694 -9.25684 -9.18178 -9.17553 -9.13487 -8.96672 -8.85711 -7.70493 -7.58246 -6.85202 -4.46540 0.98152 1.14662 2.11261 2.43544 2.72059 2.77192 3.04983 3.06476 3.13010 3.40237 3.60753 3.73340 3.88253 4.19598 4.32027 4.45615 4.54835 4.61532 4.73191 4.77101 4.81540 4.89309 4.92969 5.16905 5.22480 5.28093 5.36705 5.38887 5.51108 5.54997 5.69614 5.77230 5.79583 5.89993 6.02017 6.18045 6.19628 6.20413 6.25366 6.30835 6.64374 6.66097 6.72392 6.85379 6.92481 6.95014 7.15529 7.31575 7.61973 7.67409 7.84859 7.96531 7.98469 8.12224 8.44493 8.74147 8.77105 8.81243 10.09481 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001961 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.331659 B =14273.951787 C =15044.031392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.568 3.432 15 O -0.540 6.540 16 N -0.728 5.728 17 C 0.140 3.860 18 H 0.111 0.889 19 C -0.170 4.170 20 C 0.525 3.475 21 O -0.530 6.530 22 N -0.614 5.614 23 C 0.166 3.834 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.096 4.096 30 C 0.098 3.902 31 C -0.092 4.092 32 H 0.286 0.714 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.402 0.598 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -12.608 -6.214 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.239 4.239 13 C -0.131 4.131 14 C 0.359 3.641 15 O -0.417 6.417 16 N -0.382 5.382 17 C 0.033 3.967 18 H 0.129 0.871 19 C -0.211 4.211 20 C 0.313 3.687 21 O -0.406 6.406 22 N -0.349 5.349 23 C 0.045 3.955 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.115 4.115 30 C -0.026 4.026 31 C -0.112 4.112 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.238 0.762 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.435 -11.779 -7.123 20.682 hybrid contribution 0.389 0.327 0.355 0.620 sum -15.046 -11.452 -6.768 20.083 Atomic orbital electron populations 1.69775 1.07576 1.29962 1.33348 1.25972 0.94792 1.01589 0.92265 0.86316 0.80127 0.80037 0.80022 1.18680 1.20194 1.18938 1.19572 0.98183 0.91028 1.39960 0.90065 1.17601 0.91208 0.92470 0.89127 1.21108 1.03442 0.92761 1.05806 1.20437 0.96000 0.96737 0.98347 1.20313 1.01379 0.94509 1.07737 1.19404 0.96389 0.95378 1.01972 1.18890 0.83286 0.82633 0.79246 1.90716 1.65881 1.29855 1.55208 1.45884 1.30149 1.10237 1.51965 1.21588 0.87548 0.98876 0.88639 0.87074 1.22889 0.98850 1.02301 0.97059 1.20919 0.82770 0.79303 0.85669 1.90699 1.71245 1.63406 1.15254 1.48297 1.30364 1.48892 1.07299 1.20262 0.81304 0.90412 1.03524 1.20228 0.96795 1.00498 0.93794 1.21058 0.95227 0.98589 0.97440 1.21154 0.96794 0.98114 0.98086 1.21208 0.99871 0.99509 0.92844 1.21188 0.95591 0.98885 0.98416 1.21185 0.95851 0.96518 0.97951 1.22338 0.98289 0.97227 0.84764 1.21644 0.96413 0.96460 0.96660 0.90325 0.88602 0.88883 0.89234 0.76169 0.87380 0.87165 0.88995 0.89286 0.86061 0.85975 0.86115 0.86036 0.85666 0.90255 0.89527 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.19 10.96 55.55 0.61 -19.59 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.72 9.05 -37.73 -0.34 -12.07 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.10 2.52 5.57 -106.87 -0.60 1.92 16 10 C -0.21 -4.82 9.78 -38.81 -0.38 -5.20 16 11 C -0.10 -1.96 10.01 -39.72 -0.40 -2.35 16 12 C -0.22 -4.27 9.55 -38.92 -0.37 -4.64 16 13 C -0.13 -2.83 5.87 -105.04 -0.62 -3.45 16 14 C 0.57 11.32 7.77 -12.31 -0.10 11.22 16 15 O -0.54 -12.58 15.98 5.33 0.09 -12.49 16 16 N -0.73 -10.27 5.10 -53.15 -0.27 -10.54 16 17 C 0.14 1.70 3.53 -66.30 -0.23 1.47 16 18 H 0.11 1.56 7.54 -51.93 -0.39 1.17 16 19 C -0.17 -2.11 6.59 -26.74 -0.18 -2.28 16 20 C 0.53 6.77 8.02 -10.86 -0.09 6.68 16 21 O -0.53 -8.49 17.59 5.56 0.10 -8.39 16 22 N -0.61 -6.15 2.92 -173.78 -0.51 -6.66 16 23 C 0.17 1.40 6.06 -5.19 -0.03 1.37 16 24 C -0.11 -1.05 5.46 -104.62 -0.57 -1.62 16 25 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 28 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 29 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 30 C 0.10 0.86 7.08 -3.12 -0.02 0.83 16 31 C -0.09 -2.34 8.24 -38.44 -0.32 -2.66 16 32 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.09 1.38 6.38 -52.49 -0.33 1.04 16 36 H 0.40 4.69 6.44 -40.82 -0.26 4.43 16 37 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 39 H 0.09 0.81 7.87 -51.93 -0.41 0.41 16 40 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.08 0.55 7.80 -51.93 -0.40 0.15 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.13 3.72 5.75 -52.49 -0.30 3.42 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -31.32 407.55 -11.46 -42.78 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.30 Total: 11.41 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -6.29 Total: -16.04 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.17 Total: -36.78 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.18 Total: -20.88 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.32 -11.46 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.344 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds