Wall clock time and date at job start Tue Mar 31 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48503 * 109.46862 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47408 * 119.99813 * 3 2 1 7 7 C 1.39935 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 197.72955 * 7 2 1 9 9 C 1.41442 * 120.00172 * 17.73268 * 7 2 1 10 10 C 1.40782 * 120.17646 * 204.35808 * 9 7 2 11 11 C 1.37717 * 120.04077 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.40950 * 0.02562 * 11 10 9 13 13 C 1.39883 * 120.35612 * 359.97239 * 12 11 10 14 14 C 1.47887 * 120.02135 * 180.02562 * 13 12 11 15 15 O 1.21546 * 119.99789 * 179.97438 * 14 13 12 16 16 N 1.34776 * 120.00259 * 0.02562 * 14 13 12 17 17 C 1.46494 * 120.00336 * 180.27209 * 16 14 13 18 18 H 1.09004 * 110.85753 * 328.51891 * 17 16 14 19 19 C 1.54629 * 110.97198 * 92.34494 * 17 16 14 20 20 C 1.51278 * 104.19883 * 142.91633 * 19 17 16 21 21 O 1.21278 * 124.94575 * 163.70985 * 20 19 17 22 22 N 1.34423 * 110.11398 * 343.75416 * 20 19 17 23 23 C 1.46501 * 124.34670 * 179.57091 * 22 20 19 24 24 C 1.50704 * 109.47065 * 270.01922 * 23 22 20 25 25 C 1.38233 * 119.99946 * 269.73167 * 24 23 22 26 26 C 1.38241 * 119.99961 * 179.78949 * 25 24 23 27 27 C 1.38240 * 119.99595 * 0.43544 * 26 25 24 28 28 C 1.38237 * 119.99983 * 359.81536 * 27 26 25 29 29 C 1.38231 * 120.00202 * 359.97438 * 28 27 26 30 30 C 1.46759 * 111.30252 * 359.58718 * 22 20 19 31 31 C 1.39027 * 119.95226 * 0.28313 * 13 12 11 32 32 H 0.96993 * 119.99741 * 0.02562 * 1 2 3 33 33 H 1.08001 * 119.97944 * 0.02562 * 10 9 7 34 34 H 1.07998 * 119.79380 * 179.97438 * 11 10 9 35 35 H 1.07991 * 119.82072 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99736 * 0.02562 * 16 14 13 37 37 H 1.08997 * 110.48838 * 261.60208 * 19 17 16 38 38 H 1.09004 * 110.48064 * 24.24257 * 19 17 16 39 39 H 1.08999 * 109.47180 * 30.02025 * 23 22 20 40 40 H 1.09005 * 109.46899 * 150.02261 * 23 22 20 41 41 H 1.07998 * 120.00282 * 359.97438 * 25 24 23 42 42 H 1.07991 * 120.00265 * 180.27344 * 26 25 24 43 43 H 1.07997 * 119.99825 * 179.83654 * 27 26 25 44 44 H 1.08006 * 119.99725 * 180.02562 * 28 27 26 45 45 H 1.08002 * 120.00226 * 179.97438 * 29 28 27 46 46 H 1.08998 * 110.24776 * 258.01952 * 30 22 20 47 47 H 1.08998 * 110.24616 * 136.01550 * 30 22 20 48 48 H 1.07996 * 120.20222 * 179.70467 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2854 9 6 1.3512 -2.4079 -0.3720 10 6 1.8275 -3.6499 0.0889 11 6 1.1861 -4.8127 -0.2760 12 6 0.0724 -4.7706 -1.0962 13 6 -0.4153 -3.5458 -1.5638 14 6 -1.6065 -3.5093 -2.4395 15 8 -2.0301 -2.4448 -2.8451 16 7 -2.2229 -4.6564 -2.7869 17 6 -3.3993 -4.6208 -3.6592 18 1 -3.9701 -3.7053 -3.5037 19 6 -2.9928 -4.7751 -5.1431 20 6 -4.0977 -5.6149 -5.7451 21 8 -4.3118 -5.7331 -6.9329 22 7 -4.8082 -6.2105 -4.7717 23 6 -5.9573 -7.0884 -5.0063 24 6 -7.2201 -6.2664 -5.0342 25 6 -7.9272 -6.0459 -3.8671 26 6 -9.0832 -5.2882 -3.8920 27 6 -9.5369 -4.7586 -5.0857 28 6 -8.8324 -4.9835 -6.2536 29 6 -7.6742 -5.7375 -6.2280 30 6 -4.2852 -5.8679 -3.4440 31 6 0.2238 -2.3632 -1.2090 32 1 -0.4849 0.8400 -0.0004 33 1 2.6964 -3.6909 0.7289 34 1 1.5551 -5.7634 0.0795 35 1 -0.4230 -5.6883 -1.3767 36 1 -1.8854 -5.5059 -2.4622 37 1 -2.9463 -3.8006 -5.6292 38 1 -2.0352 -5.2893 -5.2247 39 1 -5.8352 -7.5995 -5.9613 40 1 -6.0211 -7.8252 -4.2054 41 1 -7.5750 -6.4630 -2.9353 42 1 -9.6333 -5.1122 -2.9795 43 1 -10.4414 -4.1688 -5.1056 44 1 -9.1867 -4.5693 -7.1861 45 1 -7.1241 -5.9136 -7.1406 46 1 -3.6888 -6.6907 -3.0497 47 1 -5.1049 -5.6355 -2.7641 48 1 -0.1465 -1.4156 -1.5716 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071847738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:46 Heat of formation + Delta-G solvation = -39.806852 kcal Electronic energy + Delta-G solvation = -31041.356172 eV Core-core repulsion = 26831.691303 eV Total energy + Delta-G solvation = -4209.664869 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -41.86784 -40.71263 -39.90492 -38.82883 -37.67966 -35.82519 -35.51408 -33.67477 -32.05503 -31.80819 -31.26111 -30.79009 -28.57374 -27.27900 -26.90402 -24.62140 -23.50964 -22.87594 -22.54480 -22.35680 -21.39917 -20.50150 -19.53070 -18.24184 -17.99608 -17.75191 -17.41707 -16.88988 -16.75920 -16.43801 -16.22285 -15.95800 -15.78251 -15.73404 -15.18536 -15.03173 -14.83146 -14.49607 -14.45319 -14.33363 -14.28110 -14.22405 -13.70751 -13.47923 -13.46463 -13.03892 -12.99732 -12.85528 -12.78352 -12.51969 -12.40875 -12.19644 -12.11970 -11.88465 -11.87399 -11.48096 -11.22932 -11.04974 -10.78193 -10.19756 -9.91244 -9.84481 -9.69618 -9.44669 -9.34978 -8.65186 -6.35823 0.30528 0.40269 0.47597 1.04385 1.36969 1.43133 1.48253 1.51041 1.85033 2.10003 2.19941 2.20683 2.80017 2.92280 3.26806 3.43340 3.71104 3.75375 3.80458 3.90375 3.96082 4.07722 4.12920 4.25532 4.28332 4.45823 4.47533 4.55710 4.56443 4.64157 4.68762 4.71137 4.76949 4.82644 4.95760 5.06724 5.11343 5.12847 5.22822 5.33777 5.41474 5.41858 5.53347 5.55103 5.59810 5.61137 5.89245 5.95751 5.97215 6.08467 6.08502 6.32228 6.51817 6.69692 6.90466 6.97381 7.01559 7.30907 8.31219 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001961 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.331659 B =14273.951787 C =15044.031392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.499 4.499 8 H 0.082 0.918 9 C 0.065 3.935 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.192 4.192 13 C -0.137 4.137 14 C 0.568 3.432 15 O -0.584 6.584 16 N -0.698 5.698 17 C 0.139 3.861 18 H 0.090 0.910 19 C -0.167 4.167 20 C 0.523 3.477 21 O -0.569 6.569 22 N -0.603 5.603 23 C 0.165 3.835 24 C -0.122 4.122 25 C -0.106 4.106 26 C -0.131 4.131 27 C -0.124 4.124 28 C -0.137 4.137 29 C -0.119 4.119 30 C 0.106 3.894 31 C -0.132 4.132 32 H 0.286 0.714 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.419 0.581 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 -15.945 -4.709 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.528 4.528 8 H 0.100 0.900 9 C 0.063 3.937 10 C -0.237 4.237 11 C -0.115 4.115 12 C -0.211 4.211 13 C -0.140 4.140 14 C 0.358 3.642 15 O -0.464 6.464 16 N -0.352 5.352 17 C 0.033 3.967 18 H 0.108 0.892 19 C -0.209 4.209 20 C 0.311 3.689 21 O -0.448 6.448 22 N -0.336 5.336 23 C 0.045 3.955 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.149 4.149 27 C -0.142 4.142 28 C -0.155 4.155 29 C -0.138 4.138 30 C -0.016 4.016 31 C -0.153 4.153 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.259 0.741 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.126 0.874 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.074 -15.196 -5.586 22.815 hybrid contribution 0.491 1.125 -0.157 1.237 sum -15.584 -14.072 -5.742 21.768 Atomic orbital electron populations 1.69875 1.09087 1.30565 1.35446 1.26797 0.95415 1.04777 0.91448 0.85295 0.78770 0.75764 0.80210 1.18657 1.19735 1.17672 1.19826 0.98491 0.92286 1.42205 0.90001 1.17941 0.91954 0.93858 0.89968 1.21417 1.03796 0.92905 1.05551 1.20947 0.95493 0.97571 0.97465 1.20901 1.00213 0.95223 1.04788 1.19721 0.96869 0.95449 1.02006 1.18681 0.83031 0.83475 0.79010 1.90705 1.66927 1.31961 1.56817 1.45516 1.29798 1.09102 1.50810 1.21609 0.86974 1.00208 0.87897 0.89209 1.22811 0.99515 1.01504 0.97049 1.20914 0.83074 0.79427 0.85515 1.90682 1.72334 1.64872 1.16948 1.48329 1.30110 1.48068 1.07083 1.20460 0.80043 0.90400 1.04637 1.20364 0.97380 1.00732 0.93799 1.21365 0.94961 0.98169 0.97946 1.21515 0.96979 0.97622 0.98739 1.21501 1.00429 0.99578 0.92727 1.21388 0.95650 0.99075 0.99397 1.21246 0.96565 0.97847 0.98121 1.22444 0.98672 0.96269 0.84253 1.21451 0.98239 0.96631 0.98964 0.90365 0.87647 0.84306 0.83772 0.74097 0.89420 0.86204 0.89878 0.85557 0.83463 0.83911 0.84371 0.85301 0.87300 0.86695 0.87388 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.25 10.96 21.83 0.24 -45.01 16 2 C 0.03 1.58 5.14 85.25 0.44 2.02 16 3 Si 0.98 39.33 29.59 68.60 2.03 41.36 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.72 9.05 23.47 0.21 -26.51 16 8 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.06 3.43 5.57 -21.32 -0.12 3.31 16 10 C -0.22 -9.70 9.78 22.77 0.22 -9.47 16 11 C -0.10 -3.53 10.01 22.18 0.22 -3.31 16 12 C -0.19 -6.68 9.55 22.70 0.22 -6.46 16 13 C -0.14 -5.96 5.87 -20.13 -0.12 -6.08 16 14 C 0.57 22.28 7.77 86.80 0.67 22.95 16 15 O -0.58 -28.21 15.98 -3.86 -0.06 -28.27 16 16 N -0.70 -17.62 5.10 -440.36 -2.25 -19.87 16 17 C 0.14 3.10 3.53 46.05 0.16 3.26 16 18 H 0.09 2.47 7.54 -2.38 -0.02 2.46 16 19 C -0.17 -4.03 6.59 30.59 0.20 -3.83 16 20 C 0.52 13.02 8.02 87.90 0.71 13.73 16 21 O -0.57 -18.51 17.59 -3.02 -0.05 -18.57 16 22 N -0.60 -10.42 2.92 -822.32 -2.40 -12.82 16 23 C 0.17 2.33 6.06 85.63 0.52 2.85 16 24 C -0.12 -2.06 5.46 -19.86 -0.11 -2.17 16 25 C -0.11 -1.47 9.70 22.27 0.22 -1.26 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 27 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 28 C -0.14 -2.52 10.05 22.27 0.22 -2.30 16 29 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 30 C 0.11 1.40 7.08 86.83 0.61 2.01 16 31 C -0.13 -7.05 8.24 23.01 0.19 -6.86 16 32 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.14 3.41 6.38 -2.92 -0.02 3.39 16 36 H 0.42 7.51 6.44 -92.71 -0.60 6.91 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.12 2.63 8.08 -2.39 -0.02 2.61 16 39 H 0.08 1.36 7.87 -2.39 -0.02 1.34 16 40 H 0.13 0.86 8.08 -2.38 -0.02 0.84 16 41 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.39 8.06 -2.92 -0.02 1.37 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.11 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.12 0.83 7.80 -2.39 -0.02 0.81 16 47 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.10 5.86 5.75 -2.91 -0.02 5.84 16 Total: -1.00 -75.93 407.55 3.05 -72.88 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.40 Total: 34.03 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.14 Total: -23.73 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -4.40 Total: -77.70 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.11 Total: -46.84 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -75.93 3.05 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071847738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.076 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds