Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39868 * 126.04488 * 2 1 4 4 N 1.30831 * 108.20516 * 179.74690 * 3 2 1 5 5 N 1.40087 * 108.20625 * 0.40376 * 4 3 2 6 6 C 1.46500 * 126.03636 * 179.85697 * 5 4 3 7 7 C 1.53936 * 113.73160 * 165.92503 * 6 5 4 8 8 N 1.48191 * 86.10316 * 90.77743 * 7 6 5 9 9 C 1.46891 * 111.07046 * 137.51877 * 8 7 6 10 10 C 1.50702 * 109.47222 * 90.57129 * 9 8 7 11 11 N 1.29828 * 118.34768 * 359.72856 * 10 9 8 12 12 C 1.35631 * 121.62369 * 179.76669 * 11 10 9 13 13 C 1.39634 * 121.61632 * 180.23446 * 12 11 10 14 14 C 1.37708 * 119.69442 * 180.26594 * 13 12 11 15 15 C 1.38877 * 120.82350 * 359.97438 * 14 13 12 16 16 C 1.37793 * 120.57540 * 0.02562 * 15 14 13 17 17 C 1.39377 * 119.51568 * 359.97438 * 16 15 14 18 18 C 1.46965 * 121.91253 * 179.97438 * 17 16 15 19 19 O 1.21727 * 121.28301 * 0.04527 * 18 17 16 20 20 N 1.35340 * 117.42642 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.71756 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00489 * 138.85982 * 21 20 18 23 23 C 1.39084 * 120.00104 * 318.86102 * 21 20 18 24 24 N 1.31259 * 119.99497 * 340.40413 * 23 21 20 25 25 Si 1.86793 * 120.00168 * 160.40522 * 23 21 20 26 26 H 1.48505 * 109.47377 * 90.00076 * 25 23 21 27 27 H 1.48503 * 109.46929 * 210.00098 * 25 23 21 28 28 H 1.48502 * 109.47186 * 330.00223 * 25 23 21 29 29 C 1.47966 * 90.79418 * 24.59975 * 8 7 6 30 30 C 1.34942 * 107.92384 * 359.59297 * 5 4 3 31 31 H 1.09002 * 109.46831 * 269.99865 * 1 2 3 32 32 H 1.09004 * 109.47251 * 29.99596 * 1 2 3 33 33 H 1.09000 * 109.47315 * 149.99936 * 1 2 3 34 34 H 1.08010 * 125.89287 * 0.02562 * 3 2 1 35 35 H 1.08998 * 112.94014 * 34.35666 * 6 5 4 36 36 H 1.08998 * 113.76018 * 205.06234 * 7 6 5 37 37 H 1.09001 * 113.75464 * 336.42689 * 7 6 5 38 38 H 1.09002 * 109.47057 * 210.56931 * 9 8 7 39 39 H 1.08998 * 109.47565 * 330.56684 * 9 8 7 40 40 H 1.08005 * 120.15271 * 0.26774 * 13 12 11 41 41 H 1.07996 * 119.58873 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.71409 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.24654 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99453 * 179.97438 * 24 23 21 45 45 H 1.09004 * 113.75294 * 221.08219 * 29 8 7 46 46 H 1.08994 * 113.86057 * 89.73621 * 29 8 7 47 47 H 1.08001 * 126.12977 * 180.21903 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0055 5 7 3.5844 -0.6707 -0.0002 6 6 4.7745 -1.5250 0.0001 7 6 4.4797 -2.9981 0.3359 8 7 4.3135 -3.1922 -1.1238 9 6 4.9536 -4.4378 -1.5672 10 6 3.9569 -5.5662 -1.5004 11 7 2.7555 -5.3037 -1.0843 12 6 1.8048 -6.2675 -1.0023 13 6 0.5113 -5.9840 -0.5593 14 6 -0.4216 -6.9944 -0.4864 15 6 -0.0927 -8.2941 -0.8487 16 6 1.1769 -8.5990 -1.2889 17 6 2.1361 -7.5911 -1.3702 18 6 3.5057 -7.8574 -1.8318 19 8 3.8549 -8.9754 -2.1631 20 7 4.3635 -6.8114 -1.8746 21 6 5.6527 -7.0067 -2.2984 22 1 6.1240 -6.2818 -2.9455 23 6 6.3535 -8.1382 -1.8949 24 7 5.9618 -8.8104 -0.8378 25 14 7.8520 -8.7013 -2.8575 26 1 9.0684 -8.0545 -2.3029 27 1 7.9834 -10.1766 -2.7505 28 1 7.6957 -8.3204 -4.2843 29 6 5.1792 -2.0242 -1.3986 30 6 2.3031 -1.0942 -0.0002 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.9951 2.1578 0.0004 35 1 5.6010 -1.1018 0.5710 36 1 5.3322 -3.5319 0.7557 37 1 3.5625 -3.1432 0.9066 38 1 5.3027 -4.3217 -2.5932 39 1 5.8004 -4.6621 -0.9186 40 1 0.2436 -4.9770 -0.2752 41 1 -1.4214 -6.7733 -0.1431 42 1 -0.8385 -9.0727 -0.7849 43 1 1.4268 -9.6115 -1.5697 44 1 6.4504 -9.5998 -0.5566 45 1 4.8199 -1.3928 -2.2113 46 1 6.2372 -2.2707 -1.4878 47 1 1.9723 -2.1223 -0.0006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071879635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = 149.779951 kcal Electronic energy + Delta-G solvation = -32955.721421 eV Core-core repulsion = 28721.144493 eV Total energy + Delta-G solvation = -4234.576928 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.40591 -40.51618 -39.37998 -37.61585 -36.27582 -33.80892 -32.98224 -31.95124 -31.51705 -30.43851 -30.11278 -28.21994 -26.70132 -26.14760 -25.84894 -24.72303 -22.99988 -22.09537 -21.52159 -20.79914 -20.07173 -19.32024 -18.80466 -17.85408 -17.12967 -16.72787 -15.93934 -15.68120 -15.26019 -15.01362 -14.88069 -14.50083 -14.37979 -14.04245 -13.98548 -13.82765 -13.64515 -13.25272 -13.06279 -12.92333 -12.86819 -12.65753 -12.32238 -12.13464 -12.03832 -11.89865 -11.75304 -11.41257 -11.36644 -11.21135 -11.13489 -11.02214 -10.94135 -10.73851 -10.57444 -10.43487 -9.61521 -9.28462 -8.96396 -8.86296 -8.70511 -8.39480 -8.36713 -8.17739 -7.08952 -6.74950 -4.59410 1.46918 1.64468 2.03474 2.50526 2.91422 2.96885 3.07842 3.10964 3.20929 3.59947 3.80673 3.90679 4.15260 4.27203 4.62950 4.65375 4.83137 4.85084 5.05902 5.09795 5.16454 5.23054 5.35489 5.39716 5.41605 5.47107 5.48941 5.56387 5.59284 5.70030 5.75408 5.78364 5.82709 5.85398 5.97415 6.03836 6.09274 6.14323 6.30271 6.37002 6.42790 6.64881 6.78226 6.78703 6.93685 7.01539 7.03281 7.10853 7.20012 7.47244 7.55677 7.84393 8.06296 8.41531 8.66694 9.15025 9.46927 10.26181 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.009309 B = 0.003576 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.026696 B = 7828.619724 C =10531.745863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.260 4.260 3 C 0.046 3.954 4 N -0.306 5.306 5 N -0.349 5.349 6 C 0.131 3.869 7 C 0.009 3.991 8 N -0.446 5.446 9 C 0.089 3.911 10 C 0.364 3.636 11 N -0.542 5.542 12 C 0.167 3.833 13 C -0.130 4.130 14 C -0.090 4.090 15 C -0.176 4.176 16 C -0.039 4.039 17 C -0.209 4.209 18 C 0.519 3.481 19 O -0.503 6.503 20 N -0.352 5.352 21 C -0.387 4.387 22 H 0.106 0.894 23 C 0.080 3.920 24 N -0.798 5.798 25 Si 0.927 3.073 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.263 1.263 29 C -0.008 4.008 30 C 0.089 3.911 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.177 0.823 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.280 0.720 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 12.491 2.903 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.271 4.271 3 C -0.140 4.140 4 N -0.127 5.127 5 N -0.129 5.129 6 C 0.027 3.973 7 C -0.121 4.121 8 N -0.169 5.169 9 C -0.041 4.041 10 C 0.100 3.900 11 N -0.270 5.270 12 C 0.051 3.949 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.195 4.195 16 C -0.059 4.059 17 C -0.217 4.217 18 C 0.314 3.686 19 O -0.377 6.377 20 N -0.056 5.056 21 C -0.513 4.513 22 H 0.123 0.877 23 C -0.137 4.137 24 N -0.426 5.426 25 Si 0.751 3.249 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.187 1.187 29 C -0.137 4.137 30 C -0.057 4.057 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.194 0.806 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.190 12.466 2.765 13.439 hybrid contribution 0.871 -1.723 -0.354 1.963 sum -3.319 10.743 2.411 11.500 Atomic orbital electron populations 1.19994 0.89599 1.01949 1.01121 1.20103 0.97017 0.91927 1.18087 1.23711 0.90161 0.99566 1.00545 1.77279 1.21266 0.88932 1.25208 1.48046 1.04807 1.03882 1.56215 1.22551 0.86178 0.90022 0.98562 1.24464 1.03540 0.91216 0.92878 1.68587 1.41276 1.00835 1.06177 1.21350 0.93068 0.87000 1.02706 1.22533 0.92002 0.86210 0.89243 1.68406 0.99848 1.32070 1.26629 1.18826 0.93639 0.88162 0.94256 1.20577 0.91437 0.99229 1.03721 1.20974 0.98591 0.92877 0.98562 1.20837 0.96445 0.96661 1.05562 1.20884 0.92002 0.98348 0.94636 1.20864 0.95673 0.95452 1.09722 1.18202 0.83999 0.85251 0.81173 1.90667 1.77779 1.21399 1.47822 1.42255 1.11509 1.06259 1.45594 1.19537 0.87781 1.11539 1.32489 0.87668 1.25393 0.98871 0.95555 0.93923 1.69802 1.38155 1.15638 1.19005 0.85966 0.79747 0.78672 0.80510 1.19863 1.20165 1.18743 1.24456 0.97921 0.93908 0.97460 1.22504 0.83642 1.00578 0.98974 0.92579 0.92354 0.92049 0.80607 0.87300 0.89053 0.88052 0.88502 0.90222 0.85782 0.86524 0.86665 0.85979 0.90929 0.88685 0.89434 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.37 36.00 0.37 -0.28 16 2 C -0.26 -3.15 6.10 -105.05 -0.64 -3.79 16 3 C 0.05 0.56 11.96 -17.37 -0.21 0.35 16 4 N -0.31 -4.28 12.58 30.63 0.39 -3.90 16 5 N -0.35 -4.61 3.81 -56.00 -0.21 -4.82 16 6 C 0.13 1.48 5.25 -69.62 -0.37 1.11 16 7 C 0.01 0.11 7.09 -2.63 -0.02 0.09 16 8 N -0.45 -6.18 5.24 -239.66 -1.26 -7.43 16 9 C 0.09 1.43 3.92 -4.98 -0.02 1.41 16 10 C 0.36 7.58 7.51 -154.87 -1.16 6.41 16 11 N -0.54 -11.02 9.39 -8.10 -0.08 -11.09 16 12 C 0.17 3.50 6.63 -84.50 -0.56 2.94 16 13 C -0.13 -2.25 10.03 -39.25 -0.39 -2.64 16 14 C -0.09 -1.40 10.00 -39.54 -0.40 -1.79 16 15 C -0.18 -2.92 10.02 -39.51 -0.40 -3.31 16 16 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 17 C -0.21 -4.82 5.89 -104.77 -0.62 -5.44 16 18 C 0.52 13.63 6.93 -12.47 -0.09 13.54 16 19 O -0.50 -14.55 14.28 5.17 0.07 -14.47 16 20 N -0.35 -8.59 2.68 -59.56 -0.16 -8.75 16 21 C -0.39 -9.37 8.24 -14.88 -0.12 -9.49 16 22 H 0.11 2.29 7.07 -52.49 -0.37 1.92 16 23 C 0.08 1.99 4.36 -17.48 -0.08 1.91 16 24 N -0.80 -21.47 11.54 55.50 0.64 -20.83 16 25 Si 0.93 19.13 29.59 -169.99 -5.03 14.10 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 29 C -0.01 -0.08 7.75 -2.76 -0.02 -0.11 16 30 C 0.09 1.17 10.22 -17.22 -0.18 0.99 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.18 1.57 8.06 -52.48 -0.42 1.14 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.03 7.49 -51.93 -0.39 0.64 16 37 H 0.10 1.32 6.97 -51.93 -0.36 0.96 16 38 H 0.10 1.50 7.52 -51.93 -0.39 1.11 16 39 H 0.08 1.25 7.29 -51.93 -0.38 0.87 16 40 H 0.12 1.88 8.06 -52.48 -0.42 1.45 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.12 2.47 7.83 -52.49 -0.41 2.06 16 44 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 47 H 0.18 2.37 7.22 -52.49 -0.38 1.99 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -31.78 392.93 -11.01 -42.80 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.03 Total: 7.76 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -5.27 Total: 0.73 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.68 Total: -56.83 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.47 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.78 -11.01 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071879635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.575 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds