Wall clock time and date at job start Tue Mar 31 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39868 * 126.04488 * 2 1 4 4 N 1.30831 * 108.20516 * 179.74690 * 3 2 1 5 5 N 1.40087 * 108.20625 * 0.40376 * 4 3 2 6 6 C 1.46500 * 126.03636 * 179.85697 * 5 4 3 7 7 C 1.53936 * 113.73160 * 165.92503 * 6 5 4 8 8 N 1.48191 * 86.10316 * 90.77743 * 7 6 5 9 9 C 1.46891 * 111.07046 * 137.51877 * 8 7 6 10 10 C 1.50702 * 109.47222 * 90.57129 * 9 8 7 11 11 N 1.29828 * 118.34768 * 359.72856 * 10 9 8 12 12 C 1.35631 * 121.62369 * 179.76669 * 11 10 9 13 13 C 1.39634 * 121.61632 * 180.23446 * 12 11 10 14 14 C 1.37708 * 119.69442 * 180.26594 * 13 12 11 15 15 C 1.38877 * 120.82350 * 359.97438 * 14 13 12 16 16 C 1.37793 * 120.57540 * 0.02562 * 15 14 13 17 17 C 1.39377 * 119.51568 * 359.97438 * 16 15 14 18 18 C 1.46965 * 121.91253 * 179.97438 * 17 16 15 19 19 O 1.21727 * 121.28301 * 0.04527 * 18 17 16 20 20 N 1.35340 * 117.42642 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.71756 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00489 * 138.85982 * 21 20 18 23 23 C 1.39084 * 120.00104 * 318.86102 * 21 20 18 24 24 N 1.31259 * 119.99497 * 340.40413 * 23 21 20 25 25 Si 1.86793 * 120.00168 * 160.40522 * 23 21 20 26 26 H 1.48505 * 109.47377 * 90.00076 * 25 23 21 27 27 H 1.48503 * 109.46929 * 210.00098 * 25 23 21 28 28 H 1.48502 * 109.47186 * 330.00223 * 25 23 21 29 29 C 1.47966 * 90.79418 * 24.59975 * 8 7 6 30 30 C 1.34942 * 107.92384 * 359.59297 * 5 4 3 31 31 H 1.09002 * 109.46831 * 269.99865 * 1 2 3 32 32 H 1.09004 * 109.47251 * 29.99596 * 1 2 3 33 33 H 1.09000 * 109.47315 * 149.99936 * 1 2 3 34 34 H 1.08010 * 125.89287 * 0.02562 * 3 2 1 35 35 H 1.08998 * 112.94014 * 34.35666 * 6 5 4 36 36 H 1.08998 * 113.76018 * 205.06234 * 7 6 5 37 37 H 1.09001 * 113.75464 * 336.42689 * 7 6 5 38 38 H 1.09002 * 109.47057 * 210.56931 * 9 8 7 39 39 H 1.08998 * 109.47565 * 330.56684 * 9 8 7 40 40 H 1.08005 * 120.15271 * 0.26774 * 13 12 11 41 41 H 1.07996 * 119.58873 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.71409 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.24654 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99453 * 179.97438 * 24 23 21 45 45 H 1.09004 * 113.75294 * 221.08219 * 29 8 7 46 46 H 1.08994 * 113.86057 * 89.73621 * 29 8 7 47 47 H 1.08001 * 126.12977 * 180.21903 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0055 5 7 3.5844 -0.6707 -0.0002 6 6 4.7745 -1.5250 0.0001 7 6 4.4797 -2.9981 0.3359 8 7 4.3135 -3.1922 -1.1238 9 6 4.9536 -4.4378 -1.5672 10 6 3.9569 -5.5662 -1.5004 11 7 2.7555 -5.3037 -1.0843 12 6 1.8048 -6.2675 -1.0023 13 6 0.5113 -5.9840 -0.5593 14 6 -0.4216 -6.9944 -0.4864 15 6 -0.0927 -8.2941 -0.8487 16 6 1.1769 -8.5990 -1.2889 17 6 2.1361 -7.5911 -1.3702 18 6 3.5057 -7.8574 -1.8318 19 8 3.8549 -8.9754 -2.1631 20 7 4.3635 -6.8114 -1.8746 21 6 5.6527 -7.0067 -2.2984 22 1 6.1240 -6.2818 -2.9455 23 6 6.3535 -8.1382 -1.8949 24 7 5.9618 -8.8104 -0.8378 25 14 7.8520 -8.7013 -2.8575 26 1 9.0684 -8.0545 -2.3029 27 1 7.9834 -10.1766 -2.7505 28 1 7.6957 -8.3204 -4.2843 29 6 5.1792 -2.0242 -1.3986 30 6 2.3031 -1.0942 -0.0002 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.9951 2.1578 0.0004 35 1 5.6010 -1.1018 0.5710 36 1 5.3322 -3.5319 0.7557 37 1 3.5625 -3.1432 0.9066 38 1 5.3027 -4.3217 -2.5932 39 1 5.8004 -4.6621 -0.9186 40 1 0.2436 -4.9770 -0.2752 41 1 -1.4214 -6.7733 -0.1431 42 1 -0.8385 -9.0727 -0.7849 43 1 1.4268 -9.6115 -1.5697 44 1 6.4504 -9.5998 -0.5566 45 1 4.8199 -1.3928 -2.2113 46 1 6.2372 -2.2707 -1.4878 47 1 1.9723 -2.1223 -0.0006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071879635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:37 Heat of formation + Delta-G solvation = 130.255796 kcal Electronic energy + Delta-G solvation = -32956.568052 eV Core-core repulsion = 28721.144493 eV Total energy + Delta-G solvation = -4235.423559 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.42980 -42.08803 -40.44043 -39.18832 -38.01736 -35.52847 -34.01577 -33.68137 -32.52746 -31.93365 -31.37651 -29.52904 -27.73104 -27.57085 -27.12958 -25.88586 -24.62924 -23.34814 -22.75813 -22.26701 -21.01636 -20.50406 -20.27975 -19.46995 -18.66287 -17.69866 -17.53106 -16.94609 -16.70813 -16.45809 -16.19197 -15.87676 -15.56637 -15.51815 -15.40142 -15.15225 -14.91156 -14.62520 -14.10068 -14.04024 -13.93859 -13.80730 -13.70123 -13.63462 -13.32862 -13.20367 -12.96497 -12.81530 -12.59611 -12.56930 -12.47593 -12.34252 -12.23202 -12.12175 -11.97785 -11.37633 -11.30434 -10.78948 -10.53966 -10.25580 -10.20166 -9.90282 -9.72799 -9.09729 -8.78590 -8.52626 -6.47624 -0.07742 0.10470 1.07078 1.32417 1.40512 1.49652 1.56986 1.60020 2.00200 2.01426 2.26797 2.42569 2.86111 2.94942 3.19875 3.32200 3.41170 3.63537 3.84548 3.91484 3.98141 4.13645 4.17445 4.22088 4.26558 4.40557 4.41037 4.48317 4.54274 4.61007 4.62513 4.65680 4.70801 4.77714 4.89376 4.98939 5.06008 5.10881 5.14932 5.21029 5.30975 5.35435 5.38816 5.44912 5.56150 5.58136 5.78588 5.85199 5.93441 6.03828 6.26508 6.30956 6.63831 6.86489 6.89964 7.44627 7.65413 8.45524 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.009309 B = 0.003576 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.026696 B = 7828.619724 C =10531.745863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.264 4.264 3 C 0.044 3.956 4 N -0.332 5.332 5 N -0.356 5.356 6 C 0.136 3.864 7 C 0.012 3.988 8 N -0.461 5.461 9 C 0.098 3.902 10 C 0.353 3.647 11 N -0.527 5.527 12 C 0.138 3.862 13 C -0.124 4.124 14 C -0.073 4.073 15 C -0.151 4.151 16 C -0.070 4.070 17 C -0.239 4.239 18 C 0.493 3.507 19 O -0.555 6.555 20 N -0.371 5.371 21 C -0.402 4.402 22 H 0.124 0.876 23 C 0.033 3.967 24 N -0.848 5.848 25 Si 0.989 3.011 26 H -0.248 1.248 27 H -0.291 1.291 28 H -0.259 1.259 29 C 0.002 3.998 30 C 0.073 3.927 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.205 0.795 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.155 0.845 43 H 0.107 0.893 44 H 0.275 0.725 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 15.087 3.419 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.275 4.275 3 C -0.142 4.142 4 N -0.153 5.153 5 N -0.137 5.137 6 C 0.032 3.968 7 C -0.118 4.118 8 N -0.184 5.184 9 C -0.032 4.032 10 C 0.089 3.911 11 N -0.253 5.253 12 C 0.023 3.977 13 C -0.143 4.143 14 C -0.092 4.092 15 C -0.170 4.170 16 C -0.089 4.089 17 C -0.247 4.247 18 C 0.289 3.711 19 O -0.434 6.434 20 N -0.075 5.075 21 C -0.528 4.528 22 H 0.141 0.859 23 C -0.178 4.178 24 N -0.478 5.478 25 Si 0.811 3.189 26 H -0.172 1.172 27 H -0.217 1.217 28 H -0.183 1.183 29 C -0.128 4.128 30 C -0.073 4.073 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.222 0.778 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.169 0.831 41 H 0.188 0.812 42 H 0.173 0.827 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.130 0.870 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.120 15.141 3.295 16.660 hybrid contribution 1.116 -2.408 -0.435 2.690 sum -5.003 12.732 2.861 13.976 Atomic orbital electron populations 1.20040 0.87841 1.02611 1.01927 1.20478 0.98332 0.91593 1.17098 1.24232 0.89603 1.00928 0.99436 1.77235 1.22444 0.89329 1.26282 1.48195 1.05176 1.03877 1.56499 1.22575 0.86242 0.89328 0.98622 1.24439 1.03420 0.92100 0.91798 1.68558 1.42155 1.00322 1.07338 1.21339 0.91890 0.86625 1.03309 1.23412 0.92998 0.86135 0.88508 1.68499 0.99635 1.31699 1.25419 1.19318 0.95403 0.87464 0.95486 1.21005 0.89953 1.01242 1.02106 1.21567 1.00350 0.91421 0.95902 1.21334 0.95159 0.98493 1.01984 1.21004 0.93617 0.97420 0.96890 1.21025 0.94853 0.97381 1.11403 1.18877 0.85525 0.85288 0.81379 1.90590 1.78963 1.23154 1.50679 1.42362 1.11482 1.07022 1.46676 1.19959 0.87914 1.12156 1.32806 0.85906 1.26348 1.01588 0.95587 0.94306 1.69924 1.40158 1.16442 1.21285 0.85036 0.77335 0.77241 0.79310 1.17179 1.21749 1.18263 1.24484 0.98859 0.92231 0.97187 1.22584 0.84093 1.00723 0.99906 0.91632 0.90892 0.92189 0.77842 0.85439 0.88128 0.89140 0.87818 0.89876 0.83057 0.81176 0.82703 0.87468 0.91580 0.89494 0.86952 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.37 71.23 0.74 -0.35 16 2 C -0.26 -5.89 6.10 -20.14 -0.12 -6.02 16 3 C 0.04 0.96 11.96 85.24 1.02 1.98 16 4 N -0.33 -8.75 12.58 -57.02 -0.72 -9.47 16 5 N -0.36 -8.94 3.81 -331.08 -1.26 -10.20 16 6 C 0.14 2.86 5.25 46.55 0.24 3.10 16 7 C 0.01 0.28 7.09 86.37 0.61 0.90 16 8 N -0.46 -12.34 5.24 -912.15 -4.78 -17.13 16 9 C 0.10 3.15 3.92 85.56 0.34 3.49 16 10 C 0.35 15.06 7.51 137.94 1.04 16.09 16 11 N -0.53 -21.47 9.39 -179.53 -1.69 -23.15 16 12 C 0.14 5.74 6.63 39.65 0.26 6.01 16 13 C -0.12 -3.92 10.03 22.48 0.23 -3.69 16 14 C -0.07 -1.92 10.00 22.30 0.22 -1.70 16 15 C -0.15 -4.56 10.02 22.32 0.22 -4.34 16 16 C -0.07 -2.87 9.68 22.44 0.22 -2.65 16 17 C -0.24 -11.43 5.89 -19.96 -0.12 -11.54 16 18 C 0.49 27.51 6.93 86.44 0.60 28.11 16 19 O -0.56 -34.63 14.28 -4.43 -0.06 -34.70 16 20 N -0.37 -18.91 2.68 -460.23 -1.23 -20.14 16 21 C -0.40 -20.24 8.24 84.07 0.69 -19.54 16 22 H 0.12 5.46 7.07 -2.91 -0.02 5.43 16 23 C 0.03 1.73 4.36 84.98 0.37 2.10 16 24 N -0.85 -48.52 11.54 21.68 0.25 -48.27 16 25 Si 0.99 40.56 29.59 68.60 2.03 42.59 16 26 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 27 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 29 C 0.00 0.04 7.75 86.41 0.67 0.71 16 30 C 0.07 1.83 10.22 83.54 0.85 2.68 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.17 7.49 -2.39 -0.02 2.15 16 37 H 0.09 2.31 6.97 -2.39 -0.02 2.29 16 38 H 0.10 3.16 7.52 -2.39 -0.02 3.14 16 39 H 0.08 2.60 7.29 -2.39 -0.02 2.58 16 40 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.11 4.63 7.83 -2.91 -0.02 4.60 16 44 H 0.27 14.98 8.30 -92.71 -0.77 14.21 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.11 1.81 7.93 -2.39 -0.02 1.80 16 47 H 0.18 4.46 7.22 -2.91 -0.02 4.44 16 Total: -1.00 -75.51 392.93 1.63 -73.88 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 1.01 Total: 31.25 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 8.08 Total: 15.33 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -9.43 Total: -128.36 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.06 Total: -34.70 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.51 1.63 -73.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071879635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.140 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds