Wall clock time and date at job start Tue Mar 31 2020 07:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47455 * 2 1 4 4 C 1.35966 * 117.00312 * 180.02562 * 3 2 1 5 5 C 1.38730 * 119.98162 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.01643 * 179.97438 * 5 4 3 7 7 C 1.38862 * 119.98115 * 359.97438 * 6 5 4 8 8 N 1.40038 * 120.01703 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00137 * 188.28096 * 8 7 6 10 10 C 1.50701 * 109.46873 * 262.05932 * 9 8 7 11 11 H 1.07998 * 119.99919 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99808 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00158 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99740 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47432 * 90.00161 * 14 12 10 16 16 H 1.48499 * 109.47015 * 209.99883 * 14 12 10 17 17 H 1.48501 * 109.47138 * 329.99631 * 14 12 10 18 18 C 1.34783 * 120.00103 * 8.27248 * 8 7 6 19 19 O 1.21724 * 119.99508 * 3.81401 * 18 8 7 20 20 C 1.46499 * 120.00142 * 183.80576 * 18 8 7 21 21 S 1.76205 * 126.18032 * 352.04054 * 20 18 8 22 22 C 1.70907 * 90.39323 * 180.02562 * 21 20 18 23 23 N 1.29365 * 110.62561 * 0.02562 * 22 21 20 24 24 C 1.31044 * 117.44958 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 123.05401 * 179.97438 * 24 23 22 26 26 C 1.38865 * 119.96875 * 0.25329 * 7 6 5 27 27 C 1.38081 * 119.98142 * 359.51386 * 26 7 6 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47421 * 300.00444 * 1 2 3 30 30 H 1.09001 * 109.47293 * 60.00292 * 1 2 3 31 31 H 1.09001 * 109.47421 * 239.99556 * 2 1 3 32 32 H 1.09001 * 109.47293 * 119.99708 * 2 1 3 33 33 H 1.07995 * 119.99084 * 359.97438 * 5 4 3 34 34 H 1.07994 * 120.01140 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47062 * 22.06427 * 9 8 7 36 36 H 1.09004 * 109.47268 * 142.06492 * 9 8 7 37 37 H 0.97003 * 119.99911 * 180.02562 * 13 12 10 38 38 H 1.08004 * 124.69038 * 180.26513 * 22 21 20 39 39 H 1.07999 * 120.00626 * 179.72405 * 26 7 6 40 40 H 1.08003 * 119.99386 * 180.23156 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 3.8841 2.8075 0.0000 6 6 5.2530 2.9893 -0.0001 7 6 6.0992 1.8883 0.0000 8 7 7.4875 2.0717 -0.0006 9 6 8.3781 0.9230 -0.1833 10 6 8.8663 0.4471 1.1607 11 1 8.5450 0.9499 2.0609 12 6 9.7224 -0.6307 1.2411 13 7 10.1134 -1.2432 0.1449 14 14 10.3270 -1.2209 2.9071 15 1 9.3900 -2.2420 3.4405 16 1 11.6786 -1.8182 2.7600 17 1 10.3932 -0.0717 3.8453 18 6 8.0044 3.3052 0.1668 19 8 7.2678 4.2488 0.3877 20 6 9.4525 3.5102 0.0831 21 16 10.6768 2.2481 -0.0313 22 6 11.9096 3.4312 -0.0712 23 7 11.4030 4.6196 -0.0028 24 6 10.0988 4.7165 0.0806 25 17 9.2667 6.2369 0.1801 26 6 5.5681 0.6052 -0.0053 27 6 4.1991 0.4251 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2258 3.6637 0.0004 34 1 5.6654 3.9874 -0.0001 35 1 7.8356 0.1178 -0.6788 36 1 9.2303 1.2176 -0.7959 37 1 10.7154 -2.0017 0.2016 38 1 12.9653 3.2165 -0.1471 39 1 6.2256 -0.2515 -0.0098 40 1 3.7858 -0.5728 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071889095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:17 Heat of formation + Delta-G solvation = 19.130022 kcal Electronic energy + Delta-G solvation = -28029.160203 eV Core-core repulsion = 23963.393383 eV Total energy + Delta-G solvation = -4065.766821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.44963 -39.45539 -38.84486 -36.88902 -36.05337 -35.31683 -33.03411 -31.80299 -30.68659 -30.24472 -28.50725 -27.46689 -25.47308 -24.17549 -23.53061 -22.53888 -21.48433 -20.51710 -19.24349 -18.02058 -17.97658 -17.12231 -16.67896 -16.16490 -15.99492 -15.38750 -15.17351 -14.98862 -14.61658 -14.24689 -14.02170 -13.91815 -13.46366 -13.24014 -13.15684 -12.95908 -12.70539 -12.61189 -12.39376 -12.08026 -11.90002 -11.66100 -11.35809 -11.31000 -11.24846 -11.04352 -10.84178 -10.62899 -10.45359 -10.39660 -10.18944 -9.27709 -9.16513 -9.04189 -8.83838 -8.74592 -8.56439 -8.22045 -7.06857 -6.57927 -4.65441 0.61474 1.58070 1.77695 1.83413 2.15039 2.69525 2.82335 3.02356 3.11186 3.14883 3.35265 3.47329 3.57092 4.02465 4.31398 4.73976 4.80039 4.86279 4.92259 5.11111 5.15592 5.26068 5.35245 5.41037 5.44348 5.68764 5.71651 5.83817 5.92872 5.97365 6.06646 6.16743 6.43355 6.48828 6.60650 6.75787 6.80434 6.96785 7.34907 7.46032 7.48730 7.74888 7.81506 7.91692 8.36916 8.58631 8.97114 10.44021 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.003900 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.738596 B = 7177.557242 C = 9824.033128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.322 6.322 4 C 0.091 3.909 5 C -0.134 4.134 6 C -0.130 4.130 7 C 0.138 3.862 8 N -0.532 5.532 9 C 0.220 3.780 10 C -0.542 4.542 11 H 0.073 0.927 12 C 0.078 3.922 13 N -0.872 5.872 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.596 3.404 19 O -0.518 6.518 20 C -0.315 4.315 21 S 0.418 5.582 22 C -0.083 4.083 23 N -0.488 5.488 24 C 0.169 3.831 25 Cl 0.000 7.000 26 C -0.106 4.106 27 C -0.187 4.187 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.182 0.818 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.274 0.726 38 H 0.192 0.808 39 H 0.141 0.859 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 0.415 -2.370 6.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.237 6.237 4 C 0.046 3.954 5 C -0.153 4.153 6 C -0.149 4.149 7 C 0.043 3.957 8 N -0.252 5.252 9 C 0.099 3.901 10 C -0.583 4.583 11 H 0.091 0.909 12 C -0.129 4.129 13 N -0.508 5.508 14 Si 0.720 3.280 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.192 1.192 18 C 0.386 3.614 19 O -0.398 6.398 20 C -0.443 4.443 21 S 0.682 5.318 22 C -0.373 4.373 23 N -0.204 5.204 24 C -0.002 4.002 25 Cl 0.028 6.972 26 C -0.127 4.127 27 C -0.207 4.207 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.199 0.801 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.209 0.791 39 H 0.159 0.841 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.939 0.342 -2.404 6.416 hybrid contribution 0.216 0.045 1.011 1.035 sum -5.723 0.387 -1.392 5.903 Atomic orbital electron populations 1.21759 0.93234 1.02505 1.03279 1.22681 0.95388 0.82729 1.01278 1.86027 1.19609 1.28489 1.89553 1.18980 0.81721 0.94357 1.00388 1.20352 0.94837 0.94254 1.05878 1.22420 0.91504 1.01784 0.99206 1.17831 0.82315 0.93984 1.01591 1.45635 1.04973 1.08813 1.65763 1.19941 0.88165 0.83546 0.98481 1.21491 1.29034 1.15384 0.92420 0.90905 1.24908 0.95236 0.95264 0.97507 1.69895 1.32504 1.20968 1.27408 0.86508 0.78552 0.79649 0.83334 1.19901 1.20409 1.19167 1.16661 0.85378 0.82450 0.76889 1.90480 1.58256 1.41700 1.49372 1.25635 0.99743 0.97236 1.21653 1.86591 0.89689 1.00682 1.54871 1.29388 1.08647 0.95168 1.04062 1.65700 1.10147 1.26900 1.17661 1.20814 0.88352 0.87711 1.03324 1.98375 1.74874 1.27707 1.96215 1.20871 0.94589 0.96293 1.00938 1.20935 0.93526 0.97631 1.08565 0.90686 0.91701 0.91709 0.92298 0.92272 0.85634 0.80134 0.91586 0.93985 0.91600 0.79099 0.84146 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.60 5.46 37.15 0.20 0.80 16 3 O -0.32 -4.69 10.14 -19.63 -0.20 -4.89 16 4 C 0.09 1.46 6.69 -39.22 -0.26 1.20 16 5 C -0.13 -2.24 9.98 -39.45 -0.39 -2.63 16 6 C -0.13 -2.41 8.98 -39.41 -0.35 -2.76 16 7 C 0.14 2.69 6.49 -83.65 -0.54 2.15 16 8 N -0.53 -10.91 2.71 -116.21 -0.32 -11.22 16 9 C 0.22 4.59 4.24 -5.19 -0.02 4.57 16 10 C -0.54 -12.06 7.14 -34.44 -0.25 -12.31 16 11 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.08 1.72 5.13 -17.82 -0.09 1.63 16 13 N -0.87 -19.65 13.29 55.43 0.74 -18.91 16 14 Si 0.89 17.98 29.54 -169.99 -5.02 12.96 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C 0.60 12.47 7.47 -12.93 -0.10 12.37 16 19 O -0.52 -11.05 11.69 5.17 0.06 -10.99 16 20 C -0.32 -6.28 6.28 -36.76 -0.23 -6.51 16 21 S 0.42 7.54 16.34 -107.50 -1.76 5.78 16 22 C -0.08 -1.35 12.20 51.72 0.63 -0.72 16 23 N -0.49 -9.03 10.50 -12.21 -0.13 -9.16 16 24 C 0.17 3.28 7.41 -18.39 -0.14 3.14 16 25 Cl 0.00 0.00 27.42 -51.86 -1.42 -1.42 16 26 C -0.11 -1.92 9.15 -39.41 -0.36 -2.28 16 27 C -0.19 -2.98 9.03 -39.46 -0.36 -3.33 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.06 0.61 7.66 -51.93 -0.40 0.22 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.18 3.53 4.68 -55.42 -0.26 3.27 16 35 H 0.07 1.41 6.12 -51.93 -0.32 1.09 16 36 H 0.04 0.89 4.37 -22.05 -0.10 0.80 16 37 H 0.27 5.92 8.31 -40.82 -0.34 5.58 16 38 H 0.19 2.34 8.06 -52.48 -0.42 1.92 16 39 H 0.14 2.57 6.21 -52.49 -0.33 2.25 16 40 H 0.12 1.65 6.29 -52.48 -0.33 1.32 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -25.41 358.54 -8.30 -33.71 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.78 Total: 4.30 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.88 Total: -5.55 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.29 Total: -39.30 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.14 Total: -15.88 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.96 kcal Atomic # 16 Polarization: 7.54 SS G_CDS: -1.76 Total: 5.78 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.42 Total: -1.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -25.41 -8.30 -33.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071889095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.837 kcal (2) G-P(sol) polarization free energy of solvation -25.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds