Wall clock time and date at job start Tue Mar 31 2020 07:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47455 * 2 1 4 4 C 1.35966 * 117.00312 * 180.02562 * 3 2 1 5 5 C 1.38730 * 119.98162 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.01643 * 179.97438 * 5 4 3 7 7 C 1.38862 * 119.98115 * 359.97438 * 6 5 4 8 8 N 1.40038 * 120.01703 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00137 * 188.28096 * 8 7 6 10 10 C 1.50701 * 109.46873 * 262.05932 * 9 8 7 11 11 H 1.07998 * 119.99919 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99808 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00158 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99740 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47432 * 90.00161 * 14 12 10 16 16 H 1.48499 * 109.47015 * 209.99883 * 14 12 10 17 17 H 1.48501 * 109.47138 * 329.99631 * 14 12 10 18 18 C 1.34783 * 120.00103 * 8.27248 * 8 7 6 19 19 O 1.21724 * 119.99508 * 3.81401 * 18 8 7 20 20 C 1.46499 * 120.00142 * 183.80576 * 18 8 7 21 21 S 1.76205 * 126.18032 * 352.04054 * 20 18 8 22 22 C 1.70907 * 90.39323 * 180.02562 * 21 20 18 23 23 N 1.29365 * 110.62561 * 0.02562 * 22 21 20 24 24 C 1.31044 * 117.44958 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 123.05401 * 179.97438 * 24 23 22 26 26 C 1.38865 * 119.96875 * 0.25329 * 7 6 5 27 27 C 1.38081 * 119.98142 * 359.51386 * 26 7 6 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47421 * 300.00444 * 1 2 3 30 30 H 1.09001 * 109.47293 * 60.00292 * 1 2 3 31 31 H 1.09001 * 109.47421 * 239.99556 * 2 1 3 32 32 H 1.09001 * 109.47293 * 119.99708 * 2 1 3 33 33 H 1.07995 * 119.99084 * 359.97438 * 5 4 3 34 34 H 1.07994 * 120.01140 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47062 * 22.06427 * 9 8 7 36 36 H 1.09004 * 109.47268 * 142.06492 * 9 8 7 37 37 H 0.97003 * 119.99911 * 180.02562 * 13 12 10 38 38 H 1.08004 * 124.69038 * 180.26513 * 22 21 20 39 39 H 1.07999 * 120.00626 * 179.72405 * 26 7 6 40 40 H 1.08003 * 119.99386 * 180.23156 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 3.8841 2.8075 0.0000 6 6 5.2530 2.9893 -0.0001 7 6 6.0992 1.8883 0.0000 8 7 7.4875 2.0717 -0.0006 9 6 8.3781 0.9230 -0.1833 10 6 8.8663 0.4471 1.1607 11 1 8.5450 0.9499 2.0609 12 6 9.7224 -0.6307 1.2411 13 7 10.1134 -1.2432 0.1449 14 14 10.3270 -1.2209 2.9071 15 1 9.3900 -2.2420 3.4405 16 1 11.6786 -1.8182 2.7600 17 1 10.3932 -0.0717 3.8453 18 6 8.0044 3.3052 0.1668 19 8 7.2678 4.2488 0.3877 20 6 9.4525 3.5102 0.0831 21 16 10.6768 2.2481 -0.0313 22 6 11.9096 3.4312 -0.0712 23 7 11.4030 4.6196 -0.0028 24 6 10.0988 4.7165 0.0806 25 17 9.2667 6.2369 0.1801 26 6 5.5681 0.6052 -0.0053 27 6 4.1991 0.4251 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2258 3.6637 0.0004 34 1 5.6654 3.9874 -0.0001 35 1 7.8356 0.1178 -0.6788 36 1 9.2303 1.2176 -0.7959 37 1 10.7154 -2.0017 0.2016 38 1 12.9653 3.2165 -0.1471 39 1 6.2256 -0.2515 -0.0098 40 1 3.7858 -0.5728 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071889095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:15 Heat of formation + Delta-G solvation = 6.652118 kcal Electronic energy + Delta-G solvation = -28029.701286 eV Core-core repulsion = 23963.393383 eV Total energy + Delta-G solvation = -4066.307903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.91591 -40.77565 -40.23607 -38.25464 -37.51936 -36.84281 -34.67745 -32.76680 -32.08073 -31.57223 -29.99375 -28.98196 -26.89606 -25.54783 -24.84878 -23.91568 -22.71427 -21.91612 -20.70111 -19.45457 -19.21198 -18.80733 -18.21037 -17.61863 -16.96921 -16.82446 -16.59313 -16.47543 -16.15817 -15.65531 -15.44045 -15.32598 -14.81083 -14.55870 -14.29796 -14.22542 -14.21398 -13.94338 -13.62268 -13.31308 -13.13910 -12.88948 -12.82869 -12.73047 -12.64692 -12.59200 -12.21491 -12.03118 -11.90124 -11.72289 -11.61049 -10.84653 -10.67330 -10.54274 -10.30866 -10.28237 -9.93069 -9.67661 -8.52633 -8.23309 -6.39388 -0.83010 0.11346 0.40742 0.45054 0.74495 1.22488 1.36662 1.41875 1.48697 1.54302 1.90759 2.03670 2.35340 2.38400 2.90989 3.03167 3.34682 3.73979 3.91652 3.95355 4.01693 4.10638 4.20859 4.31388 4.41573 4.49441 4.50887 4.64682 4.73960 4.81665 4.92524 4.98527 5.14052 5.16179 5.25254 5.34861 5.40982 5.55638 5.62426 5.78611 6.06618 6.27538 6.45712 6.52936 6.64471 7.01188 7.25912 8.75066 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.003900 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.738596 B = 7177.557242 C = 9824.033128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.098 3.902 5 C -0.137 4.137 6 C -0.138 4.138 7 C 0.109 3.891 8 N -0.534 5.534 9 C 0.228 3.772 10 C -0.548 4.548 11 H 0.051 0.949 12 C 0.059 3.941 13 N -0.887 5.887 14 Si 0.933 3.067 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.276 1.276 18 C 0.587 3.413 19 O -0.532 6.532 20 C -0.337 4.337 21 S 0.405 5.595 22 C -0.052 4.052 23 N -0.502 5.502 24 C 0.164 3.836 25 Cl 0.005 6.995 26 C -0.112 4.112 27 C -0.181 4.181 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.278 0.722 38 H 0.237 0.763 39 H 0.133 0.867 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 -0.444 -2.372 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.244 6.244 4 C 0.052 3.948 5 C -0.156 4.156 6 C -0.158 4.158 7 C 0.014 3.986 8 N -0.254 5.254 9 C 0.107 3.893 10 C -0.588 4.588 11 H 0.069 0.931 12 C -0.146 4.146 13 N -0.523 5.523 14 Si 0.758 3.242 15 H -0.203 1.203 16 H -0.193 1.193 17 H -0.201 1.201 18 C 0.378 3.622 19 O -0.414 6.414 20 C -0.464 4.464 21 S 0.668 5.332 22 C -0.341 4.341 23 N -0.218 5.218 24 C -0.006 4.006 25 Cl 0.033 6.967 26 C -0.133 4.133 27 C -0.200 4.200 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.151 0.849 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.148 -0.539 -2.407 6.624 hybrid contribution 0.207 0.343 0.987 1.065 sum -5.941 -0.197 -1.420 6.111 Atomic orbital electron populations 1.21789 0.91219 1.04131 1.03197 1.23060 0.97045 0.81057 1.02109 1.86042 1.18292 1.31018 1.89091 1.19024 0.82714 0.94052 0.99008 1.20518 0.94289 0.95475 1.05357 1.22304 0.92339 1.01028 1.00097 1.18107 0.82070 0.94957 1.03429 1.45635 1.05473 1.08541 1.65777 1.19782 0.88225 0.83451 0.97854 1.21344 1.29612 1.15769 0.92085 0.93085 1.25220 0.95146 0.95133 0.99151 1.69923 1.32917 1.21293 1.28184 0.85924 0.78542 0.78771 0.80966 1.20290 1.19338 1.20093 1.16886 0.85923 0.82496 0.76919 1.90467 1.58732 1.41966 1.50186 1.25648 0.99699 0.98087 1.22974 1.86541 0.90014 1.00972 1.55685 1.30004 1.10038 0.93570 1.00494 1.65807 1.09551 1.27698 1.18775 1.21047 0.88887 0.87904 1.02804 1.98370 1.74939 1.27256 1.96110 1.20888 0.95520 0.95424 1.01446 1.21179 0.92531 0.99056 1.07192 0.88194 0.91887 0.91707 0.91262 0.91574 0.83985 0.81338 0.92475 0.93677 0.91268 0.74723 0.84885 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.33 -8.98 10.14 -93.17 -0.94 -9.93 16 4 C 0.10 3.04 6.69 22.50 0.15 3.19 16 5 C -0.14 -4.55 9.98 22.35 0.22 -4.33 16 6 C -0.14 -5.26 8.98 22.38 0.20 -5.06 16 7 C 0.11 4.35 6.49 38.13 0.25 4.60 16 8 N -0.53 -22.63 2.71 -639.77 -1.73 -24.37 16 9 C 0.23 9.75 4.24 85.63 0.36 10.11 16 10 C -0.55 -24.73 7.14 25.60 0.18 -24.55 16 11 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 12 C 0.06 2.60 5.13 84.66 0.43 3.03 16 13 N -0.89 -39.52 13.29 21.45 0.28 -39.24 16 14 Si 0.93 36.33 29.54 68.60 2.03 38.35 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 18 C 0.59 25.30 7.47 86.39 0.65 25.95 16 19 O -0.53 -23.48 11.69 -4.43 -0.05 -23.53 16 20 C -0.34 -13.54 6.28 24.10 0.15 -13.39 16 21 S 0.41 14.36 16.34 -56.49 -0.92 13.43 16 22 C -0.05 -1.55 12.20 130.61 1.59 0.05 16 23 N -0.50 -17.81 10.50 -192.55 -2.02 -19.83 16 24 C 0.16 6.34 7.41 84.49 0.63 6.96 16 25 Cl 0.00 0.18 27.42 -2.72 -0.07 0.11 16 26 C -0.11 -4.08 9.15 22.38 0.20 -3.88 16 27 C -0.18 -5.54 9.03 22.35 0.20 -5.34 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 32 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 33 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.17 6.85 4.68 -49.25 -0.23 6.62 16 35 H 0.06 2.51 6.12 -2.39 -0.01 2.50 16 36 H 0.05 1.94 4.37 -21.38 -0.09 1.85 16 37 H 0.28 11.74 8.31 -92.71 -0.77 10.97 16 38 H 0.24 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.13 4.99 6.21 -2.91 -0.02 4.97 16 40 H 0.15 3.71 6.29 -2.91 -0.02 3.69 16 Total: -1.00 -54.33 358.54 3.73 -50.60 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.81 Total: 17.16 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 6.36 Total: -2.76 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.47 Total: -83.44 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.00 Total: -33.46 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 14.36 SS G_CDS: -0.92 Total: 13.43 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.07 Total: 0.11 kcal Total: -54.33 3.73 -50.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071889095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.255 kcal (2) G-P(sol) polarization free energy of solvation -54.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds