Wall clock time and date at job start Tue Mar 31 2020 04:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99267 * 2 1 4 4 C 1.50705 * 109.47155 * 298.08199 * 3 2 1 5 5 O 1.21289 * 120.00176 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99730 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99475 * 180.02562 * 6 4 3 8 8 H 1.07996 * 120.00612 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99836 * 179.97438 * 7 6 4 10 10 N 1.31405 * 120.00258 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99761 * 359.72570 * 9 7 6 12 12 H 1.48502 * 109.47382 * 90.00223 * 11 9 7 13 13 H 1.48506 * 109.47076 * 210.00175 * 11 9 7 14 14 H 1.48500 * 109.47211 * 329.99541 * 11 9 7 15 15 C 1.46895 * 111.00067 * 123.94976 * 2 1 3 16 16 C 1.50700 * 109.62669 * 297.92694 * 15 2 1 17 17 C 1.38237 * 120.00674 * 1.27392 * 16 15 2 18 18 C 1.38223 * 120.01400 * 179.76692 * 17 16 15 19 19 C 1.38264 * 120.02557 * 0.51428 * 18 17 16 20 20 C 1.38193 * 120.00949 * 359.74082 * 19 18 17 21 21 C 1.38324 * 120.00959 * 181.55511 * 16 15 2 22 22 Cl 1.73602 * 120.01009 * 359.95293 * 21 16 15 23 23 C 1.53227 * 109.62507 * 177.54443 * 15 2 1 24 24 C 1.52958 * 109.40727 * 294.91707 * 23 15 2 25 25 C 1.52962 * 109.81413 * 296.40068 * 24 23 15 26 26 C 1.53229 * 109.40210 * 63.59507 * 25 24 23 27 27 C 1.51267 * 109.62739 * 58.30805 * 15 2 1 28 28 O 1.20759 * 120.84985 * 248.34839 * 27 15 2 29 29 H 1.08996 * 109.47800 * 34.90337 * 1 2 3 30 30 H 1.09001 * 109.46680 * 154.90367 * 1 2 3 31 31 H 1.09001 * 109.47526 * 274.90024 * 1 2 3 32 32 H 1.09005 * 109.46757 * 178.08581 * 3 2 1 33 33 H 1.09001 * 109.47748 * 58.08556 * 3 2 1 34 34 H 0.96997 * 119.99967 * 0.02562 * 6 4 3 35 35 H 0.97007 * 120.00406 * 180.02562 * 10 9 7 36 36 H 1.08007 * 119.99105 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.98307 * 180.23057 * 18 17 16 38 38 H 1.07993 * 119.99409 * 179.76551 * 19 18 17 39 39 H 1.08002 * 119.99946 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.48129 * 54.89871 * 23 15 2 41 41 H 1.09005 * 109.48279 * 174.91788 * 23 15 2 42 42 H 1.08998 * 109.41455 * 56.50513 * 24 23 15 43 43 H 1.08997 * 109.41665 * 176.36911 * 24 23 15 44 44 H 1.09001 * 109.48285 * 183.57798 * 25 24 23 45 45 H 1.08999 * 109.48089 * 303.60616 * 25 24 23 46 46 H 1.09004 * 109.62661 * 65.09232 * 26 25 24 47 47 H 1.09007 * 109.62294 * 185.65536 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.5508 2.0801 -1.2536 5 8 0.8629 1.4999 -2.0668 6 7 1.9177 3.3587 -1.4711 7 6 1.5129 4.0034 -2.6112 8 1 0.9004 3.4868 -3.3353 9 6 1.8907 5.3217 -2.8352 10 7 1.5024 5.9399 -3.9278 11 14 2.9438 6.2177 -1.5792 12 1 4.3792 6.0128 -1.9002 13 1 2.6308 7.6690 -1.6158 14 1 2.6586 5.6840 -0.2231 15 6 1.9955 -0.7659 1.1376 16 6 1.5562 -0.1225 2.4276 17 6 0.7530 1.0023 2.4008 18 6 0.3461 1.5897 3.5840 19 6 0.7508 1.0590 4.7949 20 6 1.5581 -0.0623 4.8229 21 6 1.9614 -0.6538 3.6388 22 17 2.9751 -2.0627 3.6732 23 6 3.5260 -0.7969 1.0729 24 6 3.9666 -1.5707 -0.1707 25 6 3.5099 -3.0267 -0.0643 26 6 1.9787 -3.0795 -0.0424 27 6 1.4788 -2.1862 1.0766 28 8 0.6939 -2.5955 1.8980 29 1 -0.3634 0.8427 -0.5880 30 1 -0.3633 -0.9307 -0.4359 31 1 -0.3634 0.0878 1.0239 32 1 3.0844 1.3427 0.0343 33 1 1.6183 1.9054 0.8723 34 1 2.4682 3.8225 -0.8209 35 1 1.7664 6.8601 -4.0844 36 1 0.4400 1.4197 1.4551 37 1 -0.2844 2.4662 3.5625 38 1 0.4357 1.5206 5.7189 39 1 1.8738 -0.4769 5.7688 40 1 3.9084 0.2226 1.0213 41 1 3.9177 -1.2872 1.9642 42 1 3.5233 -1.1157 -1.0565 43 1 5.0531 -1.5380 -0.2518 44 1 3.8809 -3.5876 -0.9221 45 1 3.9021 -3.4645 0.8536 46 1 1.5865 -2.7254 -0.9958 47 1 1.6502 -4.1038 0.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071912088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:51 Heat of formation + Delta-G solvation = -16.558735 kcal Electronic energy + Delta-G solvation = -32614.433567 eV Core-core repulsion = 28403.343963 eV Total energy + Delta-G solvation = -4211.089605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.134 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -42.68444 -40.33245 -39.80513 -38.22638 -37.60342 -36.49481 -35.82879 -33.73925 -32.93341 -31.74025 -30.99466 -29.93738 -28.87221 -26.75628 -25.27049 -24.01167 -23.80505 -23.01015 -22.01591 -21.22029 -20.20663 -19.73022 -18.49845 -18.00356 -17.26437 -16.93220 -16.67629 -16.58949 -16.47478 -16.08170 -15.81180 -15.51762 -15.39050 -15.18390 -15.02138 -14.83931 -14.45852 -14.36122 -14.27795 -14.03350 -13.85934 -13.68945 -13.31783 -13.14748 -12.96522 -12.85882 -12.67285 -12.54677 -12.39384 -12.37338 -12.19827 -12.00084 -11.95494 -11.83030 -11.54166 -11.44750 -11.08828 -10.52918 -10.30925 -10.20483 -9.84363 -9.67941 -9.33333 -8.38748 -5.99029 0.09841 0.15437 0.83385 1.05959 1.31530 1.36538 1.45087 1.95357 2.24381 2.46843 2.51951 3.00097 3.11388 3.17391 3.35803 3.66162 3.79213 3.86360 3.96975 4.03799 4.09727 4.16183 4.21720 4.30129 4.32568 4.36928 4.40322 4.46101 4.51898 4.56348 4.58819 4.75652 4.83199 4.90910 4.99078 5.03514 5.08622 5.14020 5.21581 5.23910 5.27507 5.38427 5.52083 5.56269 5.75178 5.76069 5.86149 5.99755 6.44240 6.60951 6.90537 7.41404 7.97134 8.78591 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003659 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.695906 B = 7650.122662 C = 8694.888350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.490 5.490 3 C 0.026 3.974 4 C 0.457 3.543 5 O -0.598 6.598 6 N -0.590 5.590 7 C -0.323 4.323 8 H 0.059 0.941 9 C -0.012 4.012 10 N -0.934 5.934 11 Si 0.957 3.043 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.231 1.231 15 C 0.108 3.892 16 C -0.105 4.105 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.028 4.028 22 Cl -0.062 7.062 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.104 4.104 26 C -0.161 4.161 27 C 0.387 3.613 28 O -0.470 6.470 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.388 0.612 35 H 0.278 0.722 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -13.195 21.120 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.214 5.214 3 C -0.104 4.104 4 C 0.245 3.755 5 O -0.482 6.482 6 N -0.231 5.231 7 C -0.452 4.452 8 H 0.077 0.923 9 C -0.210 4.210 10 N -0.575 5.575 11 Si 0.778 3.222 12 H -0.181 1.181 13 H -0.202 1.202 14 H -0.155 1.155 15 C 0.017 3.983 16 C -0.108 4.108 17 C -0.159 4.159 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.132 4.132 21 C -0.055 4.055 22 Cl -0.033 7.033 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.141 4.141 26 C -0.199 4.199 27 C 0.262 3.738 28 O -0.342 6.342 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.171 0.829 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.324 -14.010 20.442 25.576 hybrid contribution -0.112 1.183 0.428 1.263 sum 6.211 -12.827 20.870 25.272 Atomic orbital electron populations 1.22860 0.87278 1.03430 1.00682 1.61815 1.08167 1.12558 1.38869 1.22491 1.03239 0.89219 0.95445 1.20517 0.83696 0.81894 0.89413 1.90546 1.42079 1.66483 1.49094 1.41993 1.48737 1.11965 1.20423 1.18977 1.31613 0.96229 0.98394 0.92332 1.26026 0.99033 0.96760 0.99216 1.69796 1.46572 1.13284 1.27806 0.85470 0.79037 0.78316 0.79400 1.18139 1.20218 1.15468 1.20924 0.98534 0.92927 0.85949 1.20205 0.99266 0.96931 0.94377 1.21779 0.97966 0.95686 1.00506 1.21560 0.99360 1.00501 0.91879 1.21498 0.96166 0.94959 0.99239 1.21357 0.98300 0.96500 0.97021 1.20799 0.98683 0.91144 0.94867 1.98319 1.66652 1.40179 1.98153 1.22204 0.89369 1.03129 1.01457 1.21505 1.01806 0.94790 0.97566 1.21478 0.91721 0.97391 1.03528 1.22326 0.99304 0.99703 0.98522 1.24840 0.76460 0.89035 0.83432 1.90377 1.28092 1.76897 1.38860 0.90953 0.92402 0.93074 0.85886 0.88893 0.77676 0.91223 0.84085 0.83344 0.81880 0.82921 0.89962 0.88645 0.91520 0.89413 0.88951 0.91261 0.88034 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.16 7.35 127.69 0.94 1.09 16 2 N -0.49 -14.61 3.79 -884.21 -3.35 -17.96 16 3 C 0.03 0.79 4.63 85.56 0.40 1.18 16 4 C 0.46 19.56 7.24 87.66 0.63 20.20 16 5 O -0.60 -31.13 13.85 -3.06 -0.04 -31.17 16 6 N -0.59 -26.59 5.09 -306.98 -1.56 -28.15 16 7 C -0.32 -18.26 10.16 84.04 0.85 -17.40 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.93 16 9 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 10 N -0.93 -55.20 13.96 21.66 0.30 -54.90 16 11 Si 0.96 37.64 27.73 68.60 1.90 39.55 16 12 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 13 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.23 -7.60 6.53 99.48 0.65 -6.95 16 15 C 0.11 2.72 0.09 2.29 0.00 2.72 16 16 C -0.11 -2.61 3.82 -19.84 -0.08 -2.68 16 17 C -0.14 -3.43 5.82 22.27 0.13 -3.30 16 18 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 19 C -0.10 -1.62 10.05 22.27 0.22 -1.39 16 20 C -0.11 -2.06 9.83 22.29 0.22 -1.84 16 21 C -0.03 -0.63 5.58 22.32 0.12 -0.51 16 22 Cl -0.06 -1.31 23.15 -2.72 -0.06 -1.38 16 23 C -0.12 -2.60 4.25 30.66 0.13 -2.47 16 24 C -0.12 -2.30 5.74 30.57 0.18 -2.12 16 25 C -0.10 -1.79 5.94 30.66 0.18 -1.61 16 26 C -0.16 -3.51 6.17 30.23 0.19 -3.32 16 27 C 0.39 10.25 3.71 29.59 0.11 10.36 16 28 O -0.47 -14.64 15.61 -1.45 -0.02 -14.66 16 29 H 0.07 2.79 5.54 -2.39 -0.01 2.78 16 30 H 0.06 1.91 7.88 -2.39 -0.02 1.89 16 31 H 0.05 1.55 4.71 -2.39 -0.01 1.54 16 32 H 0.12 3.16 5.88 -2.38 -0.01 3.14 16 33 H 0.09 2.52 4.28 -2.39 -0.01 2.51 16 34 H 0.39 14.56 5.77 -92.71 -0.53 14.03 16 35 H 0.28 15.08 8.31 -92.70 -0.77 14.31 16 36 H 0.14 3.78 3.28 -2.91 -0.01 3.77 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.08 1.63 6.01 -2.39 -0.01 1.62 16 41 H 0.10 1.86 4.67 -2.38 -0.01 1.84 16 42 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -73.91 366.09 2.53 -71.38 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: 0.45 Total: 40.55 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 4.92 Total: -3.25 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.61 Total: -101.01 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -0.06 Total: -45.84 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.55 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.06 Total: -1.38 kcal Total: -73.91 2.53 -71.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.821 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds