Wall clock time and date at job start Tue Mar 31 2020 04:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00242 * 2 1 4 4 C 1.50696 * 109.47179 * 286.95334 * 3 2 1 5 5 O 1.21295 * 120.00100 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99970 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99767 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00174 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99906 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99642 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47304 * 60.00022 * 11 9 7 13 13 H 1.48509 * 109.47162 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47190 * 299.99747 * 11 9 7 15 15 C 1.46896 * 111.00121 * 123.95756 * 2 1 3 16 16 C 1.50708 * 109.77930 * 294.93313 * 15 2 1 17 17 C 1.38234 * 120.00483 * 6.50166 * 16 15 2 18 18 C 1.38217 * 120.01319 * 179.74796 * 17 16 15 19 19 C 1.38260 * 120.02373 * 0.53944 * 18 17 16 20 20 C 1.38189 * 120.01799 * 359.71187 * 19 18 17 21 21 C 1.38329 * 120.00786 * 186.76729 * 16 15 2 22 22 Cl 1.73593 * 120.01326 * 0.02562 * 21 16 15 23 23 C 1.53223 * 109.62829 * 55.41413 * 15 2 1 24 24 C 1.52961 * 109.40443 * 65.08718 * 23 15 2 25 25 C 1.52958 * 109.81434 * 63.60298 * 24 23 15 26 26 C 1.53234 * 109.40347 * 296.39802 * 25 24 23 27 27 C 1.51267 * 108.53244 * 54.63192 * 26 25 24 28 28 O 1.20766 * 120.84904 * 128.63369 * 27 26 25 29 29 H 1.08994 * 109.46968 * 270.76607 * 1 2 3 30 30 H 1.09001 * 109.47074 * 30.76072 * 1 2 3 31 31 H 1.08996 * 109.47170 * 150.76104 * 1 2 3 32 32 H 1.09003 * 109.46775 * 46.95131 * 3 2 1 33 33 H 1.08998 * 109.47216 * 166.95297 * 3 2 1 34 34 H 0.96992 * 119.99840 * 0.02562 * 6 4 3 35 35 H 0.97008 * 119.99919 * 179.97438 * 10 9 7 36 36 H 1.08006 * 119.99396 * 359.97438 * 17 16 15 37 37 H 1.08004 * 119.98989 * 180.29349 * 18 17 16 38 38 H 1.08004 * 119.99526 * 179.72768 * 19 18 17 39 39 H 1.08001 * 120.01471 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.48154 * 305.10953 * 23 15 2 41 41 H 1.09005 * 109.49665 * 185.07580 * 23 15 2 42 42 H 1.09000 * 109.40944 * 183.70499 * 24 23 15 43 43 H 1.09000 * 109.41062 * 303.49175 * 24 23 15 44 44 H 1.08998 * 109.48770 * 56.38336 * 25 24 23 45 45 H 1.09000 * 109.48120 * 176.42481 * 25 24 23 46 46 H 1.08998 * 109.62605 * 294.91687 * 26 25 24 47 47 H 1.08996 * 109.62693 * 174.34449 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7888 1.9889 -1.3590 5 8 1.2557 1.3492 -2.2411 6 7 2.1962 3.2519 -1.5944 7 6 2.0086 3.8134 -2.8310 8 1 1.5340 3.2439 -3.6163 9 6 2.4291 5.1153 -3.0739 10 7 3.0070 5.8081 -2.1184 11 14 2.1728 5.8806 -4.7585 12 1 0.7222 5.9074 -5.0746 13 1 2.7057 7.2668 -4.7587 14 1 2.8877 5.0760 -5.7816 15 6 1.9954 -0.7660 1.1375 16 6 1.6201 -0.0850 2.4285 17 6 0.7737 1.0078 2.4129 18 6 0.4251 1.6293 3.5972 19 6 0.9317 1.1654 4.7971 20 6 1.7821 0.0762 4.8135 21 6 2.1269 -0.5499 3.6287 22 17 3.1959 -1.9175 3.6483 23 6 1.4151 -2.1839 1.1159 24 6 1.9150 -2.9187 -0.1290 25 6 3.4350 -3.0759 -0.0630 26 6 4.0915 -1.6915 -0.0858 27 6 3.5015 -0.8612 1.0326 28 8 4.2146 -0.2892 1.8217 29 1 -0.3633 0.0137 1.0275 30 1 -0.3633 0.8831 -0.5256 31 1 -0.3633 -0.8967 -0.5019 32 1 1.4708 1.9620 0.7510 33 1 3.0603 1.3518 0.2320 34 1 2.6228 3.7632 -0.8892 35 1 3.3010 6.7169 -2.2881 36 1 0.3816 1.3738 1.4753 37 1 -0.2400 2.4802 3.5850 38 1 0.6626 1.6541 5.7218 39 1 2.1774 -0.2864 5.7509 40 1 0.3265 -2.1309 1.0942 41 1 1.7351 -2.7217 2.0085 42 1 1.4507 -3.9036 -0.1792 43 1 1.6480 -2.3478 -1.0183 44 1 3.7075 -3.5924 0.8574 45 1 3.7782 -3.6551 -0.9203 46 1 3.8948 -1.2088 -1.0431 47 1 5.1665 -1.7936 0.0620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071912089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:56 Heat of formation + Delta-G solvation = -26.058896 kcal Electronic energy + Delta-G solvation = -32581.207585 eV Core-core repulsion = 28369.706022 eV Total energy + Delta-G solvation = -4211.501563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.134 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.63787 -40.12183 -39.80132 -38.29259 -37.48444 -36.46596 -35.80830 -33.29786 -32.90776 -31.71676 -30.95579 -29.38362 -29.29544 -26.88551 -25.35661 -23.99669 -23.76856 -22.78914 -22.04025 -21.11664 -19.96061 -19.66794 -18.47711 -17.91612 -17.33893 -16.98294 -16.77299 -16.47767 -16.27564 -16.16245 -15.70300 -15.58005 -15.41080 -15.23841 -15.08816 -14.72940 -14.34788 -14.23257 -13.99418 -13.85961 -13.78872 -13.47517 -13.34675 -13.11671 -12.89942 -12.74296 -12.70463 -12.61318 -12.41808 -12.28227 -12.12729 -12.06424 -12.02948 -11.80736 -11.55417 -11.46565 -11.31092 -10.47672 -10.35779 -10.00657 -9.84617 -9.67221 -9.29266 -8.45235 -5.94422 0.11413 0.17180 0.85439 1.10972 1.40216 1.42182 1.53159 2.02734 2.26640 2.51866 2.59122 2.99613 3.20468 3.23223 3.47963 3.71178 3.77322 3.87259 4.00064 4.03499 4.08985 4.12351 4.24785 4.32465 4.35116 4.39809 4.43220 4.47473 4.49706 4.59307 4.63973 4.77367 4.80903 4.88601 5.02562 5.05566 5.08598 5.15250 5.20569 5.25517 5.27102 5.39261 5.41615 5.55422 5.71845 5.77524 5.92312 6.02302 6.45602 6.59205 7.12659 7.54907 8.09513 8.72060 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003432 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.697763 B = 8156.540091 C = 9134.537354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.490 5.490 3 C 0.038 3.962 4 C 0.448 3.552 5 O -0.602 6.602 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.084 0.916 9 C -0.013 4.013 10 N -0.923 5.923 11 Si 0.993 3.007 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.272 1.272 15 C 0.110 3.890 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.116 4.116 21 C -0.025 4.025 22 Cl -0.067 7.067 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.103 4.103 26 C -0.163 4.163 27 C 0.379 3.621 28 O -0.469 6.469 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.392 0.608 35 H 0.277 0.723 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -15.582 14.728 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.215 5.215 3 C -0.093 4.093 4 C 0.235 3.765 5 O -0.487 6.487 6 N -0.213 5.213 7 C -0.459 4.459 8 H 0.102 0.898 9 C -0.213 4.213 10 N -0.564 5.564 11 Si 0.817 3.183 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.197 1.197 15 C 0.019 3.981 16 C -0.112 4.112 17 C -0.157 4.157 18 C -0.134 4.134 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.052 4.052 22 Cl -0.038 7.038 23 C -0.143 4.143 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.201 4.201 27 C 0.254 3.746 28 O -0.342 6.342 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.225 0.775 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.588 -15.879 14.120 21.550 hybrid contribution 0.273 1.395 0.129 1.427 sum -3.315 -14.484 14.250 20.587 Atomic orbital electron populations 1.22721 0.85362 1.03502 1.01113 1.61772 1.09705 1.11174 1.38838 1.22198 1.01040 0.91077 0.94968 1.20392 0.83455 0.82225 0.90468 1.90491 1.48155 1.62417 1.47634 1.41938 1.53851 1.12340 1.13158 1.19643 1.38573 0.97393 0.90304 0.89835 1.26055 0.95996 0.96325 1.02928 1.69690 1.40393 1.11814 1.34501 0.84984 0.78826 0.77242 0.77269 1.19407 1.19764 1.19719 1.20909 0.94530 0.96682 0.86004 1.20247 0.99004 0.97573 0.94343 1.21803 0.98289 0.95116 1.00468 1.21560 0.99834 1.00103 0.91894 1.21498 0.95728 0.95250 0.99417 1.21343 0.98749 0.96467 0.96940 1.20821 0.96434 0.92977 0.95015 1.98334 1.64248 1.42650 1.98553 1.21866 1.01679 0.90156 1.00560 1.21509 0.95147 1.01131 0.97686 1.21482 0.95448 0.93600 1.03509 1.22252 1.01312 0.98123 0.98424 1.24839 0.90137 0.76543 0.83055 1.90407 1.64204 1.39292 1.40264 0.91924 0.92763 0.89833 0.89762 0.90656 0.77491 0.91391 0.83931 0.83212 0.81901 0.83128 0.89604 0.89809 0.89000 0.91230 0.91234 0.88998 0.88717 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 6.71 127.69 0.86 1.41 16 2 N -0.49 -15.47 3.58 -884.23 -3.17 -18.63 16 3 C 0.04 1.41 4.51 85.56 0.39 1.80 16 4 C 0.45 21.32 7.26 87.66 0.64 21.96 16 5 O -0.60 -31.99 14.90 -3.08 -0.05 -32.04 16 6 N -0.58 -29.98 5.29 -306.98 -1.62 -31.60 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 10 N -0.92 -50.56 13.05 21.66 0.28 -50.27 16 11 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 C 0.11 2.98 0.08 2.29 0.00 2.99 16 16 C -0.11 -2.91 3.91 -19.84 -0.08 -2.99 16 17 C -0.14 -3.54 6.07 22.26 0.14 -3.41 16 18 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 19 C -0.10 -1.80 10.04 22.26 0.22 -1.58 16 20 C -0.12 -2.38 9.83 22.29 0.22 -2.17 16 21 C -0.03 -0.64 5.49 22.32 0.12 -0.51 16 22 Cl -0.07 -1.62 22.78 -2.72 -0.06 -1.68 16 23 C -0.11 -2.26 4.30 30.66 0.13 -2.13 16 24 C -0.12 -2.30 5.74 30.57 0.18 -2.13 16 25 C -0.10 -1.99 5.94 30.66 0.18 -1.80 16 26 C -0.16 -4.23 6.16 30.11 0.19 -4.04 16 27 C 0.38 11.37 3.07 29.46 0.09 11.46 16 28 O -0.47 -16.39 14.42 -1.47 -0.02 -16.41 16 29 H 0.06 1.51 4.85 -2.39 -0.01 1.50 16 30 H 0.05 1.83 6.66 -2.39 -0.02 1.82 16 31 H 0.08 2.17 7.69 -2.39 -0.02 2.15 16 32 H 0.09 2.91 4.54 -2.39 -0.01 2.90 16 33 H 0.08 2.95 6.57 -2.39 -0.02 2.93 16 34 H 0.39 19.99 7.90 -92.71 -0.73 19.26 16 35 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.14 3.88 3.16 -2.91 -0.01 3.87 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.09 1.69 6.60 -2.38 -0.02 1.68 16 41 H 0.08 1.71 5.64 -2.38 -0.01 1.70 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 47 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -68.31 370.86 2.46 -65.85 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 0.30 Total: 41.25 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 4.77 Total: -1.41 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.51 Total: -100.51 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.07 Total: -48.45 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.06 Total: -1.68 kcal Total: -68.31 2.46 -65.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.787 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds