Wall clock time and date at job start Tue Mar 31 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86799 * 119.99521 * 2 1 4 4 H 1.48501 * 109.47050 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47138 * 120.00457 * 3 2 1 7 7 C 1.39864 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 197.41928 * 7 2 1 9 9 C 1.41137 * 120.00009 * 17.41532 * 7 2 1 10 10 C 1.40879 * 120.15958 * 204.87122 * 9 7 2 11 11 C 1.36337 * 119.83936 * 180.02562 * 10 9 7 12 12 C 1.39560 * 120.16344 * 359.97438 * 11 10 9 13 13 N 1.38858 * 119.84729 * 179.97438 * 12 11 10 14 14 S 1.65604 * 120.00057 * 74.52371 * 13 12 11 15 15 O 1.42099 * 104.27618 * 179.25902 * 14 13 12 16 16 O 1.42103 * 104.27653 * 307.11725 * 14 13 12 17 17 C 1.81398 * 104.44796 * 63.18750 * 14 13 12 18 18 C 1.53000 * 109.47418 * 183.14067 * 17 14 13 19 19 O 1.42891 * 109.47308 * 180.02562 * 18 17 14 20 20 C 1.35946 * 117.00152 * 179.97438 * 19 18 17 21 21 C 1.38707 * 120.02679 * 359.72149 * 20 19 18 22 22 C 1.38152 * 119.97020 * 179.79258 * 21 20 19 23 23 C 1.38459 * 120.02650 * 0.48138 * 22 21 20 24 24 F 1.35106 * 119.96732 * 179.72880 * 23 22 21 25 25 C 1.38451 * 120.06296 * 359.74494 * 23 22 21 26 26 C 1.38146 * 120.02895 * 0.02737 * 25 23 22 27 27 C 1.39569 * 120.31155 * 0.25667 * 12 11 10 28 28 C 1.36335 * 120.16445 * 359.48308 * 27 12 11 29 29 H 0.96996 * 120.00548 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.08091 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.91643 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00240 * 254.53065 * 13 12 11 33 33 H 1.09006 * 109.47395 * 303.13975 * 17 14 13 34 34 H 1.09000 * 109.47364 * 63.13527 * 17 14 13 35 35 H 1.09003 * 109.46255 * 300.00272 * 18 17 14 36 36 H 1.08996 * 109.46813 * 59.99392 * 18 17 14 37 37 H 1.08004 * 120.01748 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.98698 * 180.20797 * 22 21 20 39 39 H 1.07996 * 119.98449 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.01706 * 179.97438 * 26 25 23 41 41 H 1.08005 * 119.91633 * 179.72282 * 27 12 11 42 42 H 1.07997 * 120.08774 * 180.23507 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0967 1.6965 1.2124 7 6 2.0084 -1.2112 -0.0005 8 1 3.0513 -1.2327 0.2794 9 6 1.3514 -2.4054 -0.3669 10 6 1.8242 -3.6463 0.1033 11 6 1.1848 -4.7959 -0.2551 12 6 0.0641 -4.7454 -1.0853 13 7 -0.5818 -5.9203 -1.4466 14 16 -1.5318 -6.7148 -0.3472 15 8 -2.0305 -7.8374 -1.0615 16 8 -0.6911 -6.8820 0.7862 17 6 -2.8712 -5.5480 0.0204 18 6 -3.7843 -6.1416 1.0950 19 8 -4.8397 -5.2228 1.3841 20 6 -5.7462 -5.6000 2.3243 21 6 -5.6249 -6.8316 2.9507 22 6 -6.5444 -7.2120 3.9091 23 6 -7.5923 -6.3686 4.2372 24 9 -8.4939 -6.7442 5.1706 25 6 -7.7173 -5.1410 3.6093 26 6 -6.7966 -4.7561 2.6540 27 6 -0.4071 -3.5199 -1.5587 28 6 0.2191 -2.3619 -1.2043 29 1 -0.4851 0.8400 -0.0004 30 1 2.6912 -3.6870 0.7461 31 1 1.5465 -5.7479 0.1043 32 1 -0.4765 -6.2757 -2.3430 33 1 -2.4477 -4.6104 0.3809 34 1 -3.4491 -5.3612 -0.8848 35 1 -4.2077 -7.0791 0.7344 36 1 -3.2064 -6.3284 2.0001 37 1 -4.8099 -7.4914 2.6920 38 1 -6.4483 -8.1695 4.3993 39 1 -8.5354 -4.4843 3.8660 40 1 -6.8944 -3.7986 2.1641 41 1 -1.2723 -3.4886 -2.2044 42 1 -0.1489 -1.4141 -1.5683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071914690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:54 Heat of formation + Delta-G solvation = -109.726886 kcal Electronic energy + Delta-G solvation = -29093.614602 eV Core-core repulsion = 24659.349663 eV Total energy + Delta-G solvation = -4434.264940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.05482 -40.36955 -38.11291 -37.59748 -36.81251 -35.72694 -34.89300 -32.94780 -32.45812 -31.44571 -29.70916 -29.33307 -28.85730 -24.89099 -24.75649 -23.02869 -22.15212 -21.26880 -20.89641 -19.11062 -18.74464 -17.77576 -17.53619 -17.34024 -16.89942 -16.75853 -16.51348 -15.85711 -15.73399 -15.47516 -15.01903 -14.87226 -14.59523 -14.11429 -13.93477 -13.78811 -13.54790 -13.30443 -13.01461 -12.92647 -12.51850 -12.22644 -12.15810 -12.15131 -11.88759 -11.79826 -11.72729 -11.44674 -11.29191 -11.17749 -11.02700 -10.94429 -10.91323 -10.79299 -10.02982 -9.89998 -9.50863 -9.36078 -9.02023 -8.38621 -7.76896 -7.48862 -7.01544 -4.57733 0.39487 0.84069 0.92370 2.48373 2.79112 2.93516 2.95336 2.96231 3.02090 3.14442 3.27054 3.75234 3.93883 4.03247 4.26914 4.34343 4.38429 4.45416 4.49332 4.69477 4.75388 4.86139 5.00228 5.24764 5.34955 5.43526 5.55668 5.71844 5.80688 5.84309 5.93225 6.08175 6.18844 6.27499 6.39168 6.79104 6.84287 6.97503 7.05244 7.11000 7.26717 7.40826 7.81237 7.85664 7.91242 8.06472 8.38977 8.63573 8.74128 9.91102 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.002427 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.897711 B =11536.320794 C =13825.493284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.083 0.917 9 C 0.119 3.881 10 C -0.225 4.225 11 C -0.058 4.058 12 C -0.048 4.048 13 N -1.024 6.024 14 S 2.602 3.398 15 O -0.975 6.975 16 O -0.947 6.947 17 C -0.640 4.640 18 C 0.075 3.925 19 O -0.297 6.297 20 C 0.123 3.877 21 C -0.184 4.184 22 C -0.110 4.110 23 C 0.055 3.945 24 F -0.143 7.143 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.087 4.087 28 C -0.166 4.166 29 H 0.286 0.714 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.408 0.592 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 -7.116 2.371 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.245 4.245 11 C -0.079 4.079 12 C -0.144 4.144 13 N -0.779 5.779 14 S 2.695 3.305 15 O -0.965 6.965 16 O -0.936 6.936 17 C -0.765 4.765 18 C -0.001 4.001 19 O -0.211 6.211 20 C 0.077 3.923 21 C -0.203 4.203 22 C -0.129 4.129 23 C 0.035 3.965 24 F -0.121 7.121 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.109 4.109 28 C -0.187 4.187 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.245 0.755 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.606 -7.663 2.823 14.191 hybrid contribution -0.106 1.116 -0.239 1.146 sum -11.713 -6.547 2.585 13.665 Atomic orbital electron populations 1.69828 1.07699 1.29972 1.32772 1.26020 0.94836 1.01757 0.92043 0.86273 0.80164 0.79633 0.80251 1.18584 1.20143 1.18748 1.19692 0.98236 0.91202 1.38116 0.89871 1.17770 0.90756 0.92187 0.87717 1.20684 1.04239 0.92506 1.07118 1.20643 0.93355 0.97625 0.96306 1.16630 1.00843 0.83612 1.13344 1.52145 1.60775 1.37585 1.27410 1.05770 0.75303 0.74479 0.74922 1.93549 1.82000 1.48614 1.72370 1.93597 1.62687 1.84640 1.52720 1.30904 1.17038 1.21029 1.07523 1.22371 0.87792 0.92043 0.97916 1.86198 1.36293 1.44451 1.54116 1.19108 0.90250 0.93176 0.89748 1.21212 1.02142 0.96952 0.99987 1.20945 0.93665 1.00162 0.98134 1.17577 0.90747 0.95489 0.92649 1.91489 1.65894 1.91586 1.63177 1.20962 1.00215 0.95356 0.96557 1.20333 0.93494 1.00704 0.99570 1.20650 0.98651 0.92333 0.99256 1.20982 0.99532 0.96784 1.01386 0.90327 0.88317 0.88042 0.75502 0.83029 0.84251 0.90726 0.90183 0.84269 0.84310 0.83979 0.83856 0.88900 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.28 10.95 55.54 0.61 -17.67 16 2 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 3 Si 0.91 17.06 29.59 -169.99 -5.03 12.03 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.71 9.03 -37.87 -0.34 -11.05 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.12 2.89 5.57 -106.79 -0.60 2.30 16 10 C -0.22 -5.13 9.74 -39.27 -0.38 -5.51 16 11 C -0.06 -1.24 9.13 -39.77 -0.36 -1.60 16 12 C -0.05 -0.93 5.70 -83.69 -0.48 -1.41 16 13 N -1.02 -16.38 5.55 32.51 0.18 -16.20 16 14 S 2.60 39.73 5.43 -107.50 -0.58 39.15 16 15 O -0.98 -16.06 18.08 -57.54 -1.04 -17.10 16 16 O -0.95 -17.49 16.85 -57.54 -0.97 -18.46 16 17 C -0.64 -8.47 6.34 37.16 0.24 -8.23 16 18 C 0.08 0.92 4.75 37.16 0.18 1.10 16 19 O -0.30 -3.93 10.14 -19.57 -0.20 -4.13 16 20 C 0.12 1.46 6.69 -39.23 -0.26 1.19 16 21 C -0.18 -1.92 9.04 -39.44 -0.36 -2.28 16 22 C -0.11 -1.07 10.02 -39.53 -0.40 -1.46 16 23 C 0.05 0.56 7.30 -39.42 -0.29 0.28 16 24 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 25 C -0.11 -1.06 10.02 -39.54 -0.40 -1.45 16 26 C -0.12 -1.27 9.98 -39.44 -0.39 -1.66 16 27 C -0.09 -1.78 9.90 -39.77 -0.39 -2.17 16 28 C -0.17 -3.86 8.63 -39.26 -0.34 -4.20 16 29 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.10 2.06 7.73 -52.49 -0.41 1.66 16 32 H 0.41 5.57 8.91 -34.47 -0.31 5.27 16 33 H 0.15 2.22 8.14 -51.92 -0.42 1.79 16 34 H 0.14 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 36 H 0.08 0.90 7.67 -51.93 -0.40 0.51 16 37 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.12 2.90 6.16 -52.49 -0.32 2.57 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -29.26 379.36 -10.61 -39.87 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.67 Total: 12.86 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: -4.66 Total: -34.57 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.79 Total: -33.87 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -2.21 Total: -39.69 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 39.73 SS G_CDS: -0.58 Total: 39.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.26 -10.61 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.860 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds