Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86799 * 119.99521 * 2 1 4 4 H 1.48501 * 109.47050 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47138 * 120.00457 * 3 2 1 7 7 C 1.39864 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 197.41928 * 7 2 1 9 9 C 1.41137 * 120.00009 * 17.41532 * 7 2 1 10 10 C 1.40879 * 120.15958 * 204.87122 * 9 7 2 11 11 C 1.36337 * 119.83936 * 180.02562 * 10 9 7 12 12 C 1.39560 * 120.16344 * 359.97438 * 11 10 9 13 13 N 1.38858 * 119.84729 * 179.97438 * 12 11 10 14 14 S 1.65604 * 120.00057 * 74.52371 * 13 12 11 15 15 O 1.42099 * 104.27618 * 179.25902 * 14 13 12 16 16 O 1.42103 * 104.27653 * 307.11725 * 14 13 12 17 17 C 1.81398 * 104.44796 * 63.18750 * 14 13 12 18 18 C 1.53000 * 109.47418 * 183.14067 * 17 14 13 19 19 O 1.42891 * 109.47308 * 180.02562 * 18 17 14 20 20 C 1.35946 * 117.00152 * 179.97438 * 19 18 17 21 21 C 1.38707 * 120.02679 * 359.72149 * 20 19 18 22 22 C 1.38152 * 119.97020 * 179.79258 * 21 20 19 23 23 C 1.38459 * 120.02650 * 0.48138 * 22 21 20 24 24 F 1.35106 * 119.96732 * 179.72880 * 23 22 21 25 25 C 1.38451 * 120.06296 * 359.74494 * 23 22 21 26 26 C 1.38146 * 120.02895 * 0.02737 * 25 23 22 27 27 C 1.39569 * 120.31155 * 0.25667 * 12 11 10 28 28 C 1.36335 * 120.16445 * 359.48308 * 27 12 11 29 29 H 0.96996 * 120.00548 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.08091 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.91643 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00240 * 254.53065 * 13 12 11 33 33 H 1.09006 * 109.47395 * 303.13975 * 17 14 13 34 34 H 1.09000 * 109.47364 * 63.13527 * 17 14 13 35 35 H 1.09003 * 109.46255 * 300.00272 * 18 17 14 36 36 H 1.08996 * 109.46813 * 59.99392 * 18 17 14 37 37 H 1.08004 * 120.01748 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.98698 * 180.20797 * 22 21 20 39 39 H 1.07996 * 119.98449 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.01706 * 179.97438 * 26 25 23 41 41 H 1.08005 * 119.91633 * 179.72282 * 27 12 11 42 42 H 1.07997 * 120.08774 * 180.23507 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0967 1.6965 1.2124 7 6 2.0084 -1.2112 -0.0005 8 1 3.0513 -1.2327 0.2794 9 6 1.3514 -2.4054 -0.3669 10 6 1.8242 -3.6463 0.1033 11 6 1.1848 -4.7959 -0.2551 12 6 0.0641 -4.7454 -1.0853 13 7 -0.5818 -5.9203 -1.4466 14 16 -1.5318 -6.7148 -0.3472 15 8 -2.0305 -7.8374 -1.0615 16 8 -0.6911 -6.8820 0.7862 17 6 -2.8712 -5.5480 0.0204 18 6 -3.7843 -6.1416 1.0950 19 8 -4.8397 -5.2228 1.3841 20 6 -5.7462 -5.6000 2.3243 21 6 -5.6249 -6.8316 2.9507 22 6 -6.5444 -7.2120 3.9091 23 6 -7.5923 -6.3686 4.2372 24 9 -8.4939 -6.7442 5.1706 25 6 -7.7173 -5.1410 3.6093 26 6 -6.7966 -4.7561 2.6540 27 6 -0.4071 -3.5199 -1.5587 28 6 0.2191 -2.3619 -1.2043 29 1 -0.4851 0.8400 -0.0004 30 1 2.6912 -3.6870 0.7461 31 1 1.5465 -5.7479 0.1043 32 1 -0.4765 -6.2757 -2.3430 33 1 -2.4477 -4.6104 0.3809 34 1 -3.4491 -5.3612 -0.8848 35 1 -4.2077 -7.0791 0.7344 36 1 -3.2064 -6.3284 2.0001 37 1 -4.8099 -7.4914 2.6920 38 1 -6.4483 -8.1695 4.3993 39 1 -8.5354 -4.4843 3.8660 40 1 -6.8944 -3.7986 2.1641 41 1 -1.2723 -3.4886 -2.2044 42 1 -0.1489 -1.4141 -1.5683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071914690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = -126.704907 kcal Electronic energy + Delta-G solvation = -29094.350825 eV Core-core repulsion = 24659.349663 eV Total energy + Delta-G solvation = -4435.001162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.86060 -41.21247 -39.77587 -38.43162 -38.17749 -37.09742 -36.48789 -34.56554 -33.44555 -32.21610 -31.41295 -30.53685 -30.16269 -26.56037 -25.71031 -23.83650 -23.01496 -22.96848 -22.54227 -20.37377 -19.69699 -19.27033 -18.77857 -18.47963 -18.18780 -17.71542 -17.52158 -17.11308 -17.04745 -16.57348 -16.23509 -15.77803 -15.71931 -15.48941 -15.39843 -14.65337 -14.60857 -14.52147 -14.09605 -14.06699 -13.88658 -13.84126 -13.35036 -13.28076 -13.21344 -13.10102 -13.05447 -13.02637 -12.85334 -12.54277 -12.39518 -12.17578 -11.89712 -11.86358 -11.66413 -11.53865 -11.02940 -10.55559 -10.25238 -9.48879 -9.21402 -9.21047 -8.69396 -6.36245 -0.86934 0.09083 0.12417 0.83388 1.18394 1.41430 1.50419 1.53859 1.67365 2.02923 2.20365 2.49301 2.66202 2.75819 3.21330 3.24317 3.32279 3.64753 3.67348 3.68853 3.73895 3.91033 4.09978 4.24562 4.30903 4.46034 4.48297 4.53286 4.65452 4.72981 4.84792 5.05045 5.07877 5.08302 5.13352 5.15099 5.28922 5.38956 5.62363 5.67182 5.81026 6.06884 6.12988 6.19826 6.28037 6.40505 6.65672 6.88816 7.00748 8.25852 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.002427 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.897711 B =11536.320794 C =13825.493284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.080 0.920 9 C 0.090 3.910 10 C -0.241 4.241 11 C -0.070 4.070 12 C -0.025 4.025 13 N -1.026 6.026 14 S 2.630 3.370 15 O -0.980 6.980 16 O -0.979 6.979 17 C -0.627 4.627 18 C 0.063 3.937 19 O -0.313 6.313 20 C 0.101 3.899 21 C -0.190 4.190 22 C -0.111 4.111 23 C 0.043 3.957 24 F -0.147 7.147 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.083 4.083 28 C -0.186 4.186 29 H 0.292 0.708 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.421 0.579 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 -7.773 2.087 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.261 4.261 11 C -0.091 4.091 12 C -0.121 4.121 13 N -0.782 5.782 14 S 2.724 3.276 15 O -0.970 6.970 16 O -0.969 6.969 17 C -0.756 4.756 18 C -0.013 4.013 19 O -0.227 6.227 20 C 0.055 3.945 21 C -0.208 4.208 22 C -0.130 4.130 23 C 0.023 3.977 24 F -0.126 7.126 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.104 4.104 28 C -0.206 4.206 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.260 0.740 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.141 0.859 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.067 -8.332 2.521 15.701 hybrid contribution 0.178 1.077 -0.142 1.101 sum -12.889 -7.255 2.379 14.981 Atomic orbital electron populations 1.69861 1.08844 1.31056 1.33709 1.26748 0.95532 1.04462 0.91165 0.85257 0.78857 0.75641 0.80083 1.18402 1.19144 1.18567 1.19888 0.98460 0.92407 1.40518 0.90236 1.18078 0.91739 0.92839 0.88615 1.20817 1.04763 0.92861 1.07678 1.20842 0.93962 0.97432 0.96879 1.16564 0.99745 0.84577 1.11211 1.52084 1.61356 1.36306 1.28419 1.04587 0.75173 0.74118 0.73732 1.93552 1.82040 1.48900 1.72498 1.93568 1.64364 1.85308 1.53692 1.30699 1.16391 1.19155 1.09315 1.22542 0.87978 0.92821 0.97972 1.86142 1.36694 1.44983 1.54853 1.19387 0.90625 0.94206 0.90255 1.21411 1.02699 0.96776 0.99946 1.21190 0.93110 1.00898 0.97781 1.17807 0.90980 0.96058 0.92811 1.91480 1.66069 1.91662 1.63371 1.21197 1.00419 0.95364 0.95751 1.20537 0.93384 1.01064 0.99842 1.20891 0.99006 0.91560 0.98931 1.20985 1.00076 0.97393 1.02194 0.89712 0.88241 0.87257 0.73968 0.84199 0.81816 0.88295 0.89637 0.82869 0.82347 0.81816 0.82948 0.85863 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.87 10.95 21.82 0.24 -38.64 16 2 C 0.04 1.77 5.14 85.22 0.44 2.21 16 3 Si 0.98 35.41 29.59 68.60 2.03 37.44 16 4 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 5 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.48 -24.30 9.03 23.38 0.21 -24.09 16 8 H 0.08 3.86 7.90 -2.91 -0.02 3.83 16 9 C 0.09 4.53 5.57 -21.27 -0.12 4.41 16 10 C -0.24 -11.29 9.74 22.47 0.22 -11.07 16 11 C -0.07 -2.98 9.13 22.15 0.20 -2.78 16 12 C -0.02 -0.94 5.70 38.67 0.22 -0.72 16 13 N -1.03 -30.59 5.55 -51.07 -0.28 -30.87 16 14 S 2.63 74.51 5.43 -56.49 -0.31 74.20 16 15 O -0.98 -29.50 18.08 -127.65 -2.31 -31.81 16 16 O -0.98 -34.86 16.85 -127.65 -2.15 -37.01 16 17 C -0.63 -15.11 6.34 71.98 0.46 -14.66 16 18 C 0.06 1.41 4.75 71.98 0.34 1.75 16 19 O -0.31 -7.76 10.14 -92.94 -0.94 -8.70 16 20 C 0.10 2.23 6.69 22.49 0.15 2.38 16 21 C -0.19 -3.61 9.04 22.36 0.20 -3.40 16 22 C -0.11 -1.95 10.02 22.30 0.22 -1.72 16 23 C 0.04 0.81 7.30 22.37 0.16 0.97 16 24 F -0.15 -2.95 17.27 44.97 0.78 -2.17 16 25 C -0.11 -1.86 10.02 22.30 0.22 -1.64 16 26 C -0.13 -2.51 9.98 22.36 0.22 -2.29 16 27 C -0.08 -3.28 9.90 22.15 0.22 -3.06 16 28 C -0.19 -8.77 8.63 22.48 0.19 -8.58 16 29 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 30 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.11 4.41 7.73 -2.91 -0.02 4.39 16 32 H 0.42 10.41 8.91 -96.75 -0.86 9.55 16 33 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.10 1.70 7.65 -2.39 -0.02 1.68 16 36 H 0.09 1.78 7.67 -2.39 -0.02 1.77 16 37 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 41 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.11 5.37 6.16 -2.91 -0.02 5.36 16 Total: -1.00 -63.38 379.36 0.84 -62.55 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.21 Total: 37.30 kcal Atomic # 6 Polarization: -65.85 SS G_CDS: 3.57 Total: -62.28 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.04 Total: -69.51 kcal Atomic # 8 Polarization: -72.12 SS G_CDS: -5.40 Total: -77.52 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Atomic # 16 Polarization: 74.51 SS G_CDS: -0.31 Total: 74.20 kcal Total: -63.38 0.84 -62.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.159 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds