Wall clock time and date at job start Tue Mar 31 2020 07:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47319 * 2 1 4 4 N 1.46905 * 109.47003 * 119.99593 * 2 1 3 5 5 C 1.46848 * 110.99882 * 304.37345 * 4 2 1 6 6 C 1.53036 * 109.51946 * 185.83881 * 5 4 2 7 7 C 1.53113 * 109.28037 * 300.81540 * 6 5 4 8 8 C 1.53120 * 109.15850 * 57.65569 * 7 6 5 9 9 C 1.46848 * 110.99806 * 68.58079 * 4 2 1 10 10 H 1.09004 * 109.45906 * 294.16847 * 9 4 2 11 11 C 1.50698 * 109.46258 * 54.14211 * 9 4 2 12 12 O 1.20831 * 119.99913 * 30.50307 * 11 9 4 13 13 O 1.34234 * 120.00223 * 210.77679 * 11 9 4 14 14 C 1.45192 * 117.00215 * 179.72945 * 13 11 9 15 15 C 1.50695 * 109.47238 * 180.02562 * 14 13 11 16 16 O 1.21278 * 119.99838 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00031 * 179.97438 * 15 14 13 18 18 C 1.46508 * 119.99658 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47230 * 90.00082 * 18 17 15 20 20 H 1.07999 * 120.00074 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00207 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99515 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46543 * 90.00442 * 23 21 19 25 25 H 1.48499 * 109.47143 * 209.99994 * 23 21 19 26 26 H 1.48489 * 109.47142 * 330.00827 * 23 21 19 27 27 C 1.46494 * 120.00138 * 359.97438 * 17 15 14 28 28 C 1.52997 * 109.47208 * 90.00232 * 27 17 15 29 29 C 1.47206 * 109.47259 * 180.02562 * 28 27 17 30 30 N 8.94901 * 122.06606 * 223.39600 * 2 1 3 31 31 H 1.09002 * 109.47206 * 300.00701 * 1 2 3 32 32 H 1.09005 * 109.46938 * 59.99811 * 1 2 3 33 33 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47348 * 239.99754 * 2 1 3 35 35 H 1.08996 * 109.47697 * 173.93808 * 3 2 1 36 36 H 1.09009 * 109.47003 * 293.94143 * 3 2 1 37 37 H 1.09003 * 109.47330 * 53.93386 * 3 2 1 38 38 H 1.08998 * 109.45932 * 305.84806 * 5 4 2 39 39 H 1.08998 * 109.46802 * 65.81896 * 5 4 2 40 40 H 1.09002 * 109.50525 * 60.75890 * 6 5 4 41 41 H 1.08996 * 109.50346 * 180.87701 * 6 5 4 42 42 H 1.08998 * 109.52830 * 177.56144 * 7 6 5 43 43 H 1.08993 * 109.52512 * 297.75602 * 7 6 5 44 44 H 1.09001 * 109.50561 * 182.40204 * 8 7 6 45 45 H 1.09007 * 109.50342 * 62.28953 * 8 7 6 46 46 H 1.09006 * 109.46803 * 299.99779 * 14 13 11 47 47 H 1.08991 * 109.47427 * 59.99523 * 14 13 11 48 48 H 1.09004 * 109.46531 * 209.99673 * 18 17 15 49 49 H 1.08998 * 109.47022 * 329.99702 * 18 17 15 50 50 H 0.97005 * 119.99442 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.47315 * 210.00017 * 27 17 15 52 52 H 1.09005 * 109.47206 * 329.99843 * 27 17 15 53 53 H 1.09007 * 109.46915 * 299.99511 * 28 27 17 54 54 H 1.08995 * 109.47320 * 59.99722 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4653 -0.0895 2.4184 6 6 2.1067 -0.7382 3.6471 7 6 1.8277 -2.2436 3.6277 8 6 2.3720 -2.8388 2.3262 9 6 1.7231 -2.1292 1.1357 10 1 0.6439 -2.2790 1.1680 11 6 2.2707 -2.6984 -0.1477 12 8 3.2593 -2.2172 -0.6487 13 8 1.6570 -3.7366 -0.7373 14 6 2.2365 -4.2291 -1.9741 15 6 1.4187 -5.3867 -2.4860 16 8 0.4438 -5.7602 -1.8689 17 7 1.7708 -6.0070 -3.6296 18 6 0.9760 -7.1328 -4.1269 19 6 -0.1099 -6.6182 -5.0363 20 1 -0.1989 -5.5586 -5.2253 21 6 -0.9892 -7.5002 -5.6278 22 7 -0.8805 -8.7906 -5.3980 23 14 -2.3357 -6.8623 -6.7545 24 1 -1.8318 -6.8152 -8.1507 25 1 -3.5111 -7.7670 -6.6828 26 1 -2.7344 -5.4976 -6.3260 27 6 2.9481 -5.5554 -4.3753 28 6 4.1838 -6.3126 -3.8849 29 6 5.3669 -5.8585 -4.6338 30 7 6.2811 -5.5105 -5.2103 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 3.1246 1.4445 0.1085 36 1 1.7680 1.9241 -0.9393 37 1 1.5908 1.9868 0.8307 38 1 1.6744 0.9803 2.4217 39 1 0.3874 -0.2488 2.4446 40 1 3.1831 -0.5674 3.6287 41 1 1.6838 -0.3014 4.5517 42 1 2.3192 -2.7162 4.4780 43 1 0.7529 -2.4156 3.6852 44 1 2.1387 -3.9028 2.2870 45 1 3.4527 -2.7010 2.2870 46 1 2.2403 -3.4310 -2.7166 47 1 3.2589 -4.5591 -1.7903 48 1 1.6203 -7.8157 -4.6806 49 1 0.5260 -7.6596 -3.2854 50 1 -1.4993 -9.4111 -5.8139 51 1 2.8014 -5.7491 -5.4379 52 1 3.0904 -4.4864 -4.2171 53 1 4.3305 -6.1189 -2.8222 54 1 4.0414 -7.3816 -4.0431 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921328.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:24 Heat of formation + Delta-G solvation = -109.492691 kcal Electronic energy + Delta-G solvation = -34208.993786 eV Core-core repulsion = 29759.405376 eV Total energy + Delta-G solvation = -4449.588410 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.215 amu Computer time = 4.71 seconds Orbital eigenvalues (eV) -42.14917 -40.88968 -39.89404 -38.07556 -37.45015 -36.72654 -36.13397 -34.89435 -32.64755 -32.23839 -31.25810 -30.72192 -28.51321 -28.17142 -26.02674 -25.38868 -25.06090 -24.42368 -22.18727 -21.60775 -20.43212 -20.07344 -19.04880 -18.88235 -18.40235 -18.01056 -17.73299 -17.47898 -17.17911 -16.63714 -16.22598 -16.06011 -15.81031 -15.71590 -15.39830 -15.13270 -14.89583 -14.67447 -14.60757 -14.41977 -14.31017 -14.04329 -13.84295 -13.71215 -13.61125 -13.56282 -13.42836 -13.17869 -12.98900 -12.96753 -12.75720 -12.72334 -12.52656 -12.47071 -12.21831 -12.16922 -12.13157 -12.03403 -11.79854 -11.69939 -11.66006 -11.57693 -11.21926 -11.15372 -10.71264 -10.58681 -9.59601 -9.34670 -8.19256 -6.31019 1.01670 1.17901 1.39953 1.42343 1.51266 1.56696 1.77330 1.82022 2.26654 2.43697 2.76729 3.02275 3.13529 3.52261 3.54888 3.72811 3.82723 3.87299 3.96267 3.97479 4.03762 4.07035 4.10185 4.10629 4.25322 4.26797 4.30693 4.50504 4.56138 4.65685 4.70961 4.74701 4.77468 4.78073 4.91767 4.95979 4.99784 5.01326 5.02567 5.09982 5.16653 5.20684 5.24269 5.25373 5.31863 5.36210 5.48331 5.55202 5.82308 5.90417 6.07224 6.10316 6.52375 6.58598 6.66989 6.77787 7.23575 7.41240 8.87799 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.002534 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.007827 B =11048.667220 C =12361.827705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 C -0.132 4.132 4 N -0.519 5.519 5 C 0.050 3.950 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.107 4.107 9 C 0.098 3.902 10 H 0.076 0.924 11 C 0.466 3.534 12 O -0.507 6.507 13 O -0.349 6.349 14 C 0.054 3.946 15 C 0.507 3.493 16 O -0.567 6.567 17 N -0.589 5.589 18 C 0.260 3.740 19 C -0.543 4.543 20 H 0.054 0.946 21 C 0.014 3.986 22 N -0.924 5.924 23 Si 0.957 3.043 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.275 1.275 27 C 0.107 3.893 28 C -0.040 4.040 29 C 0.245 3.755 30 N -0.487 5.487 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.128 0.872 48 H 0.043 0.957 49 H 0.009 0.991 50 H 0.266 0.734 51 H 0.094 0.906 52 H 0.102 0.898 53 H 0.133 0.867 54 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 17.321 17.227 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 C -0.189 4.189 4 N -0.245 5.245 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.145 4.145 9 C -0.012 4.012 10 H 0.093 0.907 11 C 0.308 3.692 12 O -0.394 6.394 13 O -0.264 6.264 14 C -0.023 4.023 15 C 0.294 3.706 16 O -0.445 6.445 17 N -0.321 5.321 18 C 0.140 3.860 19 C -0.582 4.582 20 H 0.072 0.928 21 C -0.186 4.186 22 N -0.564 5.564 23 Si 0.782 3.218 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.017 4.017 28 C -0.080 4.080 29 C -0.073 4.073 30 N -0.165 5.165 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.146 0.854 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.075 0.925 51 H 0.113 0.887 52 H 0.120 0.880 53 H 0.151 0.849 54 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.629 17.633 16.471 25.626 hybrid contribution -2.006 -0.549 -1.071 2.339 sum 6.623 17.084 15.400 23.935 Atomic orbital electron populations 1.22491 0.96644 1.01690 1.03694 1.21870 0.93229 0.96886 0.92567 1.21737 1.01534 0.93142 1.02537 1.62079 1.59861 0.99135 1.03454 1.22340 0.97293 0.99953 0.88092 1.21642 1.01727 0.94846 0.97157 1.21577 1.01527 0.96143 0.96013 1.21614 1.01009 0.99356 0.92489 1.21312 0.99857 0.90457 0.89564 0.90653 1.24072 0.81839 0.76969 0.86290 1.90647 1.25637 1.58819 1.64253 1.86586 1.55231 1.47039 1.37552 1.22929 0.97940 0.96107 0.85334 1.20412 0.85040 0.83924 0.81194 1.90711 1.29222 1.66207 1.58398 1.47993 1.27926 1.33908 1.22252 1.18913 0.90027 0.83782 0.93286 1.21735 1.14970 0.93559 1.27899 0.92811 1.25689 0.99671 0.95005 0.98228 1.70017 1.38877 1.02537 1.44924 0.85573 0.78799 0.78038 0.79365 1.19250 1.20968 1.19959 1.21629 0.82393 0.99494 0.98171 1.19845 0.84698 1.03575 0.99932 1.29086 0.93796 0.91914 0.92490 1.81229 1.13172 1.10819 1.11261 0.90372 0.91396 0.93947 0.92174 0.92412 0.91676 0.91037 0.88642 0.93655 0.91331 0.89160 0.89585 0.91352 0.90375 0.90781 0.86906 0.85419 0.93898 0.97317 0.92499 0.88747 0.88024 0.84927 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 8.47 71.98 0.61 -2.63 16 2 C 0.06 1.21 2.57 44.92 0.12 1.33 16 3 C -0.13 -2.01 8.92 71.98 0.64 -1.37 16 4 N -0.52 -9.69 4.22 -850.39 -3.59 -13.28 16 5 C 0.05 0.64 4.57 86.33 0.39 1.03 16 6 C -0.12 -1.23 6.09 30.64 0.19 -1.04 16 7 C -0.12 -1.36 6.00 30.67 0.18 -1.18 16 8 C -0.11 -1.82 5.36 30.65 0.16 -1.66 16 9 C 0.10 2.05 1.98 44.19 0.09 2.14 16 10 H 0.08 1.60 6.83 -2.39 -0.02 1.59 16 11 C 0.47 12.37 5.88 71.24 0.42 12.79 16 12 O -0.51 -14.81 15.12 21.95 0.33 -14.48 16 13 O -0.35 -10.56 9.75 -45.11 -0.44 -11.00 16 14 C 0.05 1.46 4.50 71.23 0.32 1.78 16 15 C 0.51 18.74 7.75 87.66 0.68 19.42 16 16 O -0.57 -27.31 16.08 15.78 0.25 -27.06 16 17 N -0.59 -20.83 2.46 -826.16 -2.03 -22.86 16 18 C 0.26 12.24 5.16 85.63 0.44 12.68 16 19 C -0.54 -28.80 9.39 25.60 0.24 -28.56 16 20 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 21 C 0.01 0.74 5.46 84.65 0.46 1.20 16 22 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 23 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.11 2.60 5.17 86.38 0.45 3.05 16 28 C -0.04 -0.72 6.03 28.79 0.17 -0.54 16 29 C 0.24 5.47 15.43 89.45 1.38 6.85 16 30 N -0.49 -13.89 18.53 20.00 0.37 -13.52 16 31 H 0.08 1.08 6.47 -2.39 -0.02 1.06 16 32 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.04 0.87 6.76 -2.39 -0.02 0.85 16 34 H 0.06 1.50 5.82 -2.39 -0.01 1.48 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 0.83 6.69 -2.39 -0.02 0.81 16 38 H 0.10 1.02 6.28 -2.39 -0.02 1.01 16 39 H 0.05 0.56 6.58 -2.39 -0.02 0.55 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.11 2.72 7.39 -2.38 -0.02 2.70 16 47 H 0.13 2.63 7.18 -2.39 -0.02 2.62 16 48 H 0.04 1.97 8.07 -2.38 -0.02 1.95 16 49 H 0.01 0.48 7.42 -2.39 -0.02 0.46 16 50 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 51 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 52 H 0.10 1.96 6.44 -2.38 -0.02 1.94 16 53 H 0.13 1.78 7.22 -2.38 -0.02 1.77 16 54 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -75.05 433.82 5.06 -69.98 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.90 Total: 14.18 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 6.95 Total: 25.29 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.96 Total: -102.05 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: 0.15 Total: -52.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.05 5.06 -69.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921328.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.508 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.72 seconds