Wall clock time and date at job start Tue Mar 31 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 N 1.46899 * 109.47238 * 120.00293 * 2 1 3 5 5 C 1.46849 * 110.99085 * 294.85675 * 4 2 1 6 6 C 1.53031 * 109.51559 * 174.15139 * 5 4 2 7 7 C 1.53128 * 109.27812 * 59.18287 * 6 5 4 8 8 C 1.53117 * 109.16238 * 302.34869 * 7 6 5 9 9 C 1.46853 * 110.99678 * 170.65542 * 4 2 1 10 10 H 1.08999 * 109.46313 * 65.83231 * 9 4 2 11 11 C 1.50700 * 109.46357 * 305.85087 * 9 4 2 12 12 O 1.20819 * 119.99869 * 330.78287 * 11 9 4 13 13 O 1.34230 * 119.99896 * 150.78180 * 11 9 4 14 14 C 1.45196 * 117.00012 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.46988 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00144 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99745 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99735 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47484 * 269.99774 * 18 17 15 20 20 H 1.08005 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00174 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99592 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99708 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47401 * 90.00081 * 23 21 19 25 25 H 1.48505 * 109.46766 * 209.99925 * 23 21 19 26 26 H 1.48501 * 109.47370 * 329.99454 * 23 21 19 27 27 C 1.46499 * 120.00162 * 0.02562 * 17 15 14 28 28 C 1.53000 * 109.47549 * 90.00098 * 27 17 15 29 29 C 1.47197 * 109.47254 * 180.02562 * 28 27 17 30 30 N 8.26709 * 106.76838 * 237.99240 * 2 1 3 31 31 H 1.08995 * 109.47588 * 59.99795 * 1 2 3 32 32 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46928 * 299.99649 * 1 2 3 34 34 H 1.09008 * 109.46928 * 240.00351 * 2 1 3 35 35 H 1.09003 * 109.46891 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47181 * 299.99981 * 3 2 1 37 37 H 1.08994 * 109.46943 * 60.00278 * 3 2 1 38 38 H 1.09000 * 109.46314 * 54.13745 * 5 4 2 39 39 H 1.09003 * 109.46146 * 294.16474 * 5 4 2 40 40 H 1.08996 * 109.50435 * 299.24620 * 6 5 4 41 41 H 1.08999 * 109.50828 * 179.12609 * 6 5 4 42 42 H 1.09004 * 109.52170 * 182.43804 * 7 6 5 43 43 H 1.09001 * 109.56982 * 62.28242 * 7 6 5 44 44 H 1.09006 * 109.50105 * 297.71088 * 8 7 6 45 45 H 1.08995 * 109.50241 * 177.59451 * 8 7 6 46 46 H 1.09001 * 109.47284 * 60.00132 * 14 13 11 47 47 H 1.08993 * 109.47117 * 299.99771 * 14 13 11 48 48 H 1.08998 * 109.47243 * 30.00461 * 18 17 15 49 49 H 1.09008 * 109.46680 * 150.00076 * 18 17 15 50 50 H 0.97003 * 119.99538 * 179.97438 * 22 21 19 51 51 H 1.09002 * 109.47012 * 329.99786 * 27 17 15 52 52 H 1.09011 * 109.47099 * 210.00113 * 27 17 15 53 53 H 1.09002 * 109.47218 * 59.99814 * 28 27 17 54 54 H 1.09006 * 109.46503 * 299.99942 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6517 0.0407 2.4173 6 6 2.0481 -0.7792 3.6471 7 6 3.5576 -1.0348 3.6192 8 6 3.9213 -1.7562 2.3185 9 6 3.4705 -0.9079 1.1272 10 1 3.9822 0.0542 1.1521 11 6 3.8087 -1.6234 -0.1553 12 8 3.0048 -2.3709 -0.6601 13 8 5.0030 -1.4303 -0.7367 14 6 5.2600 -2.1518 -1.9703 15 6 6.6394 -1.8117 -2.4731 16 8 7.3373 -1.0379 -1.8526 17 7 7.0978 -2.3683 -3.6117 18 6 8.4385 -2.0373 -4.1007 19 6 8.3589 -0.8417 -5.0146 20 1 7.4050 -0.3747 -5.2111 21 6 9.5039 -0.3432 -5.5990 22 7 9.4344 0.7006 -6.3961 23 14 11.1537 -1.1504 -5.2585 24 1 11.4014 -2.2141 -6.2645 25 1 12.2301 -0.1306 -5.3411 26 1 11.1413 -1.7478 -3.8990 27 6 6.2549 -3.3035 -4.3609 28 6 5.4150 -2.5298 -5.3791 29 6 4.5677 -3.4694 -6.1315 30 7 3.9150 -4.1955 -6.7122 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 0.5753 0.2123 2.4267 39 1 2.1721 0.9983 2.4360 40 1 1.5176 -1.7313 3.6362 41 1 1.7890 -0.2280 4.5511 42 1 3.8378 -1.6552 4.4705 43 1 4.0898 -0.0848 3.6699 44 1 3.4202 -2.7237 2.2867 45 1 5.0004 -1.9029 2.2732 46 1 4.5205 -1.8669 -2.7187 47 1 5.1947 -3.2238 -1.7845 48 1 9.0867 -1.8061 -3.2555 49 1 8.8453 -2.8871 -4.6489 50 1 10.2400 1.0515 -6.8070 51 1 5.5954 -3.8306 -3.6714 52 1 6.8858 -4.0235 -4.8824 53 1 6.0745 -2.0027 -6.0686 54 1 4.7842 -1.8099 -4.8576 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921329.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:37 Heat of formation + Delta-G solvation = -104.882519 kcal Electronic energy + Delta-G solvation = -34367.907928 eV Core-core repulsion = 29918.519430 eV Total energy + Delta-G solvation = -4449.388498 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.215 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -42.15719 -40.93749 -39.90907 -38.08454 -37.45836 -36.76046 -36.13076 -34.76111 -32.67239 -32.36553 -31.25760 -30.95983 -28.89007 -28.16572 -26.02225 -25.24043 -25.02945 -24.15127 -22.18340 -21.60141 -20.43899 -20.10524 -19.29013 -19.00655 -18.35274 -18.08914 -17.67656 -17.54888 -17.19146 -16.55528 -16.28104 -16.06341 -15.81648 -15.60683 -15.37135 -15.16543 -14.97751 -14.68559 -14.62571 -14.44750 -14.23848 -14.14650 -13.96468 -13.75865 -13.66030 -13.60621 -13.50937 -13.31710 -12.98783 -12.95349 -12.82993 -12.71601 -12.47202 -12.39246 -12.16723 -12.13243 -12.02148 -11.98861 -11.81037 -11.66594 -11.58955 -11.56775 -11.21329 -11.14834 -10.76742 -10.72517 -9.60047 -9.34249 -8.24478 -6.27918 1.01751 1.15189 1.39384 1.44789 1.52135 1.52891 1.78553 1.80237 2.23354 2.38847 2.76460 3.00672 3.11321 3.48670 3.54198 3.72376 3.82839 3.87245 3.96393 3.97626 4.03963 4.08214 4.10617 4.11644 4.25401 4.26710 4.31364 4.48165 4.55770 4.65357 4.72558 4.74190 4.76331 4.77976 4.82398 4.91561 4.96567 5.01561 5.01846 5.07231 5.09606 5.15957 5.19718 5.24340 5.25536 5.36767 5.48174 5.49795 5.57773 5.90792 6.07406 6.29866 6.45809 6.56635 6.65077 6.75859 7.18877 7.37505 8.91061 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002511 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.742361 B =11146.967429 C =12266.201543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 C -0.187 4.187 4 N -0.519 5.519 5 C 0.049 3.951 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.106 4.106 9 C 0.098 3.902 10 H 0.076 0.924 11 C 0.466 3.534 12 O -0.506 6.506 13 O -0.349 6.349 14 C 0.052 3.948 15 C 0.510 3.490 16 O -0.564 6.564 17 N -0.587 5.587 18 C 0.220 3.780 19 C -0.528 4.528 20 H 0.049 0.951 21 C 0.015 3.985 22 N -0.944 5.944 23 Si 0.934 3.066 24 H -0.256 1.256 25 H -0.292 1.292 26 H -0.252 1.252 27 C 0.112 3.888 28 C -0.045 4.045 29 C 0.246 3.754 30 N -0.484 5.484 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.127 0.873 48 H 0.025 0.975 49 H 0.060 0.940 50 H 0.265 0.735 51 H 0.113 0.887 52 H 0.110 0.890 53 H 0.116 0.884 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 -4.608 19.861 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 C -0.245 4.245 4 N -0.245 5.245 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.144 4.144 9 C -0.012 4.012 10 H 0.094 0.906 11 C 0.308 3.692 12 O -0.393 6.393 13 O -0.264 6.264 14 C -0.025 4.025 15 C 0.297 3.703 16 O -0.442 6.442 17 N -0.318 5.318 18 C 0.099 3.901 19 C -0.566 4.566 20 H 0.068 0.932 21 C -0.183 4.183 22 N -0.584 5.584 23 Si 0.758 3.242 24 H -0.181 1.181 25 H -0.218 1.218 26 H -0.175 1.175 27 C -0.012 4.012 28 C -0.086 4.086 29 C -0.071 4.071 30 N -0.163 5.163 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.134 0.866 47 H 0.145 0.855 48 H 0.043 0.957 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.131 0.869 52 H 0.128 0.872 53 H 0.134 0.866 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.633 -5.888 19.051 25.967 hybrid contribution 1.670 1.269 -0.753 2.229 sum -14.963 -4.619 18.299 24.084 Atomic orbital electron populations 1.21736 0.92341 1.02272 1.02610 1.21875 0.97628 0.92463 0.92620 1.22489 1.00729 0.97618 1.03684 1.62060 1.09100 1.49910 1.03447 1.22349 1.02047 0.95217 0.88119 1.21641 0.95598 1.00982 0.97137 1.21580 0.96733 1.00923 0.96025 1.21610 1.01474 0.98856 0.92493 1.21312 0.91227 0.99069 0.89590 0.90608 1.24059 0.78641 0.80198 0.86262 1.90646 1.49113 1.35629 1.63915 1.86580 1.36912 1.64957 1.37952 1.22937 0.94830 0.99009 0.85678 1.20391 0.88089 0.80547 0.81243 1.90712 1.59491 1.35747 1.58217 1.47771 1.17129 1.44653 1.22293 1.19537 0.80417 0.95912 0.94260 1.21588 0.94977 1.13521 1.26563 0.93230 1.25693 1.02839 0.95243 0.94501 1.70033 1.30141 1.25504 1.32723 0.85911 0.79262 0.78844 0.80172 1.18050 1.21843 1.17540 1.21728 0.94187 0.90858 0.94400 1.19869 0.96248 0.94521 0.97989 1.29092 0.92506 0.92989 0.92548 1.81231 1.11995 1.11739 1.11293 0.91621 0.92622 0.91011 0.92058 0.93892 0.91427 0.90391 0.88643 0.93641 0.91331 0.89168 0.89597 0.91344 0.90808 0.90384 0.86635 0.85501 0.95687 0.92234 0.92609 0.86922 0.87215 0.86607 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.11 71.98 0.66 -1.39 16 2 C 0.06 1.21 2.56 44.92 0.11 1.32 16 3 C -0.19 -3.25 8.46 71.98 0.61 -2.65 16 4 N -0.52 -9.65 4.21 -850.37 -3.58 -13.23 16 5 C 0.05 0.63 4.56 86.32 0.39 1.02 16 6 C -0.12 -1.21 6.09 30.65 0.19 -1.03 16 7 C -0.12 -1.34 6.00 30.68 0.18 -1.16 16 8 C -0.11 -1.79 5.36 30.65 0.16 -1.62 16 9 C 0.10 2.03 2.00 44.19 0.09 2.12 16 10 H 0.08 1.59 6.85 -2.39 -0.02 1.58 16 11 C 0.47 12.20 5.92 71.24 0.42 12.62 16 12 O -0.51 -14.63 15.04 21.98 0.33 -14.30 16 13 O -0.35 -10.33 9.75 -45.06 -0.44 -10.77 16 14 C 0.05 1.38 4.50 71.24 0.32 1.70 16 15 C 0.51 17.97 7.75 87.66 0.68 18.65 16 16 O -0.56 -25.93 16.08 15.77 0.25 -25.68 16 17 N -0.59 -19.31 2.46 -826.14 -2.03 -21.34 16 18 C 0.22 9.13 4.27 85.63 0.37 9.50 16 19 C -0.53 -27.05 9.47 25.60 0.24 -26.81 16 20 H 0.05 2.77 7.66 -2.91 -0.02 2.75 16 21 C 0.02 0.84 5.47 84.66 0.46 1.30 16 22 N -0.94 -55.87 13.96 21.45 0.30 -55.58 16 23 Si 0.93 41.14 27.47 68.60 1.88 43.03 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 27 C 0.11 2.50 5.21 86.38 0.45 2.95 16 28 C -0.05 -1.05 6.03 28.79 0.17 -0.88 16 29 C 0.25 6.22 15.43 89.44 1.38 7.60 16 30 N -0.48 -14.71 18.54 20.00 0.37 -14.34 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.86 6.41 -2.38 -0.02 0.84 16 34 H 0.06 1.52 5.77 -2.38 -0.01 1.51 16 35 H 0.04 0.87 6.79 -2.39 -0.02 0.86 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.08 6.47 -2.39 -0.02 1.07 16 38 H 0.10 1.03 6.18 -2.39 -0.01 1.01 16 39 H 0.05 0.56 6.58 -2.39 -0.02 0.55 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.12 2.62 7.18 -2.39 -0.02 2.61 16 47 H 0.13 2.59 7.39 -2.39 -0.02 2.57 16 48 H 0.03 1.16 6.48 -2.39 -0.02 1.14 16 49 H 0.06 2.17 7.32 -2.38 -0.02 2.16 16 50 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 51 H 0.11 1.75 6.44 -2.39 -0.02 1.74 16 52 H 0.11 2.15 7.90 -2.38 -0.02 2.13 16 53 H 0.12 3.33 7.26 -2.39 -0.02 3.32 16 54 H 0.12 2.46 7.22 -2.38 -0.02 2.45 16 Total: -1.00 -75.02 427.92 4.84 -70.18 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.85 Total: 18.77 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 6.89 Total: 23.25 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.94 Total: -104.47 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: 0.14 Total: -50.75 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.03 kcal Total: -75.02 4.84 -70.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921329.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.699 kcal (2) G-P(sol) polarization free energy of solvation -75.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds