Wall clock time and date at job start Tue Mar 31 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52999 * 109.47403 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47610 * 180.02562 * 4 3 2 6 6 C 1.35703 * 117.00230 * 179.97438 * 5 4 3 7 7 C 1.38999 * 119.91187 * 0.23099 * 6 5 4 8 8 C 1.37701 * 120.09020 * 180.23190 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.51091 * 8 7 6 10 10 C 1.47599 * 120.08645 * 180.27459 * 9 8 7 11 11 O 1.21577 * 120.00304 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99607 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99997 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46848 * 325.00016 * 13 12 10 15 15 C 1.50693 * 109.47422 * 204.99707 * 13 12 10 16 16 O 1.21212 * 119.99931 * 0.02562 * 15 13 12 17 17 O 1.34311 * 120.00302 * 179.97438 * 15 13 12 18 18 C 1.34924 * 117.00192 * 180.02562 * 17 15 13 19 19 H 1.08000 * 119.99770 * 359.97438 * 18 17 15 20 20 C 1.38751 * 119.99908 * 180.02562 * 18 17 15 21 21 N 1.31444 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99771 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 59.99758 * 22 20 18 24 24 H 1.48503 * 109.46859 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47067 * 299.99887 * 22 20 18 26 26 C 1.53008 * 109.46851 * 84.99920 * 13 12 10 27 27 H 1.08994 * 109.46555 * 185.00289 * 26 13 12 28 28 C 1.53004 * 109.47069 * 305.00216 * 26 13 12 29 29 O 1.42901 * 109.46985 * 65.00276 * 26 13 12 30 30 C 1.39733 * 119.82382 * 0.26122 * 9 8 7 31 31 C 1.37708 * 119.90814 * 359.97438 * 30 9 8 32 32 H 1.09006 * 109.46984 * 300.00172 * 1 2 3 33 33 H 1.09000 * 109.47113 * 59.99969 * 1 2 3 34 34 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46758 * 240.00217 * 2 1 3 36 36 H 1.09000 * 109.47113 * 120.00031 * 2 1 3 37 37 H 1.09006 * 109.47341 * 60.00046 * 3 2 1 38 38 H 1.09005 * 109.47365 * 300.00401 * 3 2 1 39 39 H 1.08997 * 109.46982 * 59.99455 * 4 3 2 40 40 H 1.09000 * 109.46513 * 300.00413 * 4 3 2 41 41 H 1.08004 * 119.95764 * 0.02562 * 7 6 5 42 42 H 1.08002 * 120.04909 * 179.79641 * 8 7 6 43 43 H 0.97003 * 120.00676 * 359.97438 * 12 10 9 44 44 H 0.96994 * 120.00240 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47136 * 60.00075 * 28 26 13 46 46 H 1.08994 * 109.46783 * 180.02562 * 28 26 13 47 47 H 1.09003 * 109.46561 * 300.00073 * 28 26 13 48 48 H 0.96703 * 113.99572 * 299.99686 * 29 26 13 49 49 H 1.08003 * 120.04711 * 180.02562 * 30 9 8 50 50 H 1.07999 * 119.95155 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.3917 2.9676 0.0000 7 6 6.2368 1.8640 -0.0053 8 6 7.6025 2.0401 -0.0004 9 6 8.1386 3.3306 -0.0004 10 6 9.6019 3.5239 -0.0013 11 8 10.3425 2.5597 -0.0025 12 7 10.1170 4.7694 -0.0008 13 6 11.5694 4.9613 -0.0022 14 1 12.0405 4.1739 0.5860 15 6 11.8994 6.3032 0.5989 16 8 11.0096 7.0273 0.9903 17 8 13.1795 6.6964 0.7020 18 6 13.4058 7.9084 1.2501 19 1 12.5757 8.5144 1.5820 20 6 14.7048 8.3766 1.3862 21 7 15.7150 7.6393 0.9817 22 14 15.0180 10.0549 2.1443 23 1 14.4803 10.0811 3.5283 24 1 16.4790 10.3187 2.1763 25 1 14.3436 11.0989 1.3315 26 6 12.0898 4.9048 -1.4400 27 1 13.1784 4.9585 -1.4346 28 6 11.6471 3.5930 -2.0914 29 8 11.5621 6.0067 -2.1812 30 6 7.2857 4.4374 0.0002 31 6 5.9211 4.2528 0.0002 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6767 1.9564 -0.8900 39 1 3.9330 0.9288 -0.8908 40 1 3.9337 0.9285 0.8891 41 1 5.8217 0.8669 -0.0099 42 1 8.2584 1.1821 -0.0013 43 1 9.5261 5.5387 -0.0002 44 1 16.6231 7.9665 1.0772 45 1 10.5585 3.5393 -2.0967 46 1 12.0182 3.5526 -3.1154 47 1 12.0497 2.7526 -1.5259 48 1 10.5963 6.0228 -2.2278 49 1 7.6962 5.4364 -0.0003 50 1 5.2612 5.1077 0.0002 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:31 Heat of formation + Delta-G solvation = -186.895852 kcal Electronic energy + Delta-G solvation = -32489.505465 eV Core-core repulsion = 27868.434757 eV Total energy + Delta-G solvation = -4621.070709 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.82966 -40.12780 -38.93228 -37.68879 -36.87850 -35.57500 -35.36382 -33.95902 -32.19992 -31.49227 -31.38106 -30.24322 -29.38399 -27.70755 -25.17562 -24.81816 -23.50381 -22.62490 -21.76746 -21.51791 -20.63737 -20.04429 -18.69266 -18.01335 -17.76923 -16.92617 -16.87245 -16.60403 -16.12117 -15.64240 -15.32148 -15.24612 -15.18820 -14.70752 -14.46738 -14.38915 -14.34232 -14.18014 -13.83004 -13.78222 -13.49564 -13.28253 -12.91871 -12.70385 -12.69558 -12.43605 -12.23606 -11.86546 -11.71271 -11.68706 -11.64300 -11.53459 -11.39031 -11.21485 -11.09117 -11.03324 -10.93133 -10.47949 -10.43933 -10.11517 -9.95320 -9.82016 -9.37248 -9.25594 -8.83158 -8.59762 -8.50343 -6.43158 -4.11014 0.69350 1.05900 2.68817 2.75528 2.99936 3.10086 3.19638 3.24210 3.41770 3.68164 3.93391 4.26516 4.29530 4.40747 4.45480 4.51127 4.52829 4.67669 4.69676 4.75918 4.77228 4.95115 4.98053 5.00029 5.09480 5.16637 5.19247 5.21106 5.27904 5.36460 5.41730 5.55144 5.57504 5.63727 5.68503 5.72284 5.73602 5.89798 5.98526 6.02749 6.11040 6.19430 6.33902 6.38236 6.42812 6.73504 6.99905 7.35822 7.55541 7.89338 7.91128 8.23153 8.60613 9.04723 9.76465 10.74178 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.001684 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.061509 B =16623.675107 C =17413.604031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.056 3.944 5 O -0.312 6.312 6 C 0.155 3.845 7 C -0.220 4.220 8 C -0.016 4.016 9 C -0.171 4.171 10 C 0.565 3.435 11 O -0.536 6.536 12 N -0.707 5.707 13 C 0.130 3.870 14 H 0.121 0.879 15 C 0.402 3.598 16 O -0.556 6.556 17 O -0.201 6.201 18 C -0.381 4.381 19 H 0.096 0.904 20 C 0.044 3.956 21 N -0.861 5.861 22 Si 0.945 3.055 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.269 1.269 26 C 0.102 3.898 27 H 0.123 0.877 28 C -0.174 4.174 29 O -0.549 6.549 30 C -0.042 4.042 31 C -0.159 4.159 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.408 0.592 44 H 0.271 0.729 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.365 0.635 49 H 0.138 0.862 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.986 -14.713 -4.313 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.019 4.019 5 O -0.225 6.225 6 C 0.108 3.892 7 C -0.239 4.239 8 C -0.035 4.035 9 C -0.174 4.174 10 C 0.353 3.647 11 O -0.415 6.415 12 N -0.361 5.361 13 C 0.023 3.977 14 H 0.139 0.861 15 C 0.248 3.752 16 O -0.454 6.454 17 O -0.107 6.107 18 C -0.458 4.458 19 H 0.114 0.886 20 C -0.160 4.160 21 N -0.497 5.497 22 Si 0.770 3.230 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.194 1.194 26 C 0.041 3.959 27 H 0.140 0.860 28 C -0.232 4.232 29 O -0.353 6.353 30 C -0.061 4.061 31 C -0.177 4.177 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.246 0.754 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.211 0.789 49 H 0.155 0.845 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.907 -14.900 -4.284 28.494 hybrid contribution -0.608 0.794 0.570 1.151 sum -24.515 -14.106 -3.714 28.527 Atomic orbital electron populations 1.21752 0.95089 1.01961 1.02159 1.21439 0.96536 0.95486 1.02509 1.21595 0.92312 0.97923 1.03932 1.22925 0.95578 0.81640 1.01763 1.86021 1.19023 1.29627 1.87861 1.19255 0.82255 0.94201 0.93458 1.21203 0.93978 0.98268 1.10467 1.21045 0.94159 0.96632 0.91695 1.19808 0.92698 0.94366 1.10528 1.18026 0.87735 0.82825 0.76114 1.90772 1.60692 1.39962 1.50040 1.45677 1.07106 1.08523 1.74834 1.21005 0.81542 0.96155 0.98949 0.86098 1.22587 0.83505 0.88081 0.81038 1.90529 1.48423 1.55624 1.50792 1.83829 1.24312 1.35659 1.66860 1.21176 0.93697 0.91342 1.39538 0.88634 1.25339 0.94130 0.99781 0.96779 1.69979 0.99176 1.37152 1.43374 0.85722 0.77553 0.80284 0.79477 1.19495 1.20320 1.19418 1.22341 1.00128 0.86203 0.87189 0.85980 1.22555 1.01574 0.97986 1.01058 1.86701 1.25014 1.48425 1.75127 1.21238 0.92376 0.98662 0.93843 1.20363 0.95014 0.94993 1.07380 0.92492 0.92506 0.92412 0.91607 0.91596 0.90678 0.90695 0.91717 0.91717 0.84906 0.84225 0.75358 0.91910 0.92872 0.92284 0.90253 0.78920 0.84459 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.63 16 3 C -0.12 -0.60 5.58 -26.73 -0.15 -0.75 16 4 C 0.06 0.35 4.73 37.16 0.18 0.52 16 5 O -0.31 -2.86 10.12 -18.81 -0.19 -3.05 16 6 C 0.15 1.53 6.70 -39.02 -0.26 1.27 16 7 C -0.22 -2.06 9.01 -39.50 -0.36 -2.41 16 8 C -0.02 -0.18 9.58 -39.22 -0.38 -0.56 16 9 C -0.17 -2.10 5.87 -104.96 -0.62 -2.72 16 10 C 0.56 8.39 5.95 -12.44 -0.07 8.32 16 11 O -0.54 -9.11 13.47 5.30 0.07 -9.03 16 12 N -0.71 -10.98 4.30 -55.95 -0.24 -11.22 16 13 C 0.13 2.43 2.67 -69.08 -0.18 2.25 16 14 H 0.12 2.29 7.58 -51.93 -0.39 1.89 16 15 C 0.40 9.69 6.79 36.00 0.24 9.94 16 16 O -0.56 -14.09 15.07 -19.05 -0.29 -14.38 16 17 O -0.20 -5.70 9.67 -20.71 -0.20 -5.90 16 18 C -0.38 -11.22 9.65 30.92 0.30 -10.92 16 19 H 0.10 2.81 6.86 -52.49 -0.36 2.45 16 20 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 21 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 22 Si 0.95 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 26 C 0.10 1.77 3.44 -26.72 -0.09 1.68 16 27 H 0.12 2.31 8.14 -51.93 -0.42 1.89 16 28 C -0.17 -2.57 8.02 37.16 0.30 -2.27 16 29 O -0.55 -9.90 12.82 -35.23 -0.45 -10.35 16 30 C -0.04 -0.46 9.53 -39.22 -0.37 -0.83 16 31 C -0.16 -1.58 9.97 -39.50 -0.39 -1.98 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.34 7.64 -51.93 -0.40 -0.05 16 40 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 41 H 0.13 0.92 6.28 -52.48 -0.33 0.59 16 42 H 0.14 1.49 7.64 -52.49 -0.40 1.09 16 43 H 0.41 5.96 5.81 -40.82 -0.24 5.72 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.05 0.76 5.92 -51.93 -0.31 0.45 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.21 7.18 -51.93 -0.37 0.84 16 48 H 0.36 5.26 8.66 45.56 0.39 5.65 16 49 H 0.14 1.32 6.40 -52.48 -0.34 0.98 16 50 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -34.58 416.11 -7.54 -42.12 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.50 Total: 11.73 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.75 Total: 1.87 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.52 Total: -35.54 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.06 Total: -42.70 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.58 -7.54 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.773 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds