Wall clock time and date at job start Tue Mar 31 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52999 * 109.47403 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47610 * 180.02562 * 4 3 2 6 6 C 1.35703 * 117.00230 * 179.97438 * 5 4 3 7 7 C 1.38999 * 119.91187 * 0.23099 * 6 5 4 8 8 C 1.37701 * 120.09020 * 180.23190 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.51091 * 8 7 6 10 10 C 1.47599 * 120.08645 * 180.27459 * 9 8 7 11 11 O 1.21577 * 120.00304 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99607 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99997 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46848 * 325.00016 * 13 12 10 15 15 C 1.50693 * 109.47422 * 204.99707 * 13 12 10 16 16 O 1.21212 * 119.99931 * 0.02562 * 15 13 12 17 17 O 1.34311 * 120.00302 * 179.97438 * 15 13 12 18 18 C 1.34924 * 117.00192 * 180.02562 * 17 15 13 19 19 H 1.08000 * 119.99770 * 359.97438 * 18 17 15 20 20 C 1.38751 * 119.99908 * 180.02562 * 18 17 15 21 21 N 1.31444 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99771 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 59.99758 * 22 20 18 24 24 H 1.48503 * 109.46859 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47067 * 299.99887 * 22 20 18 26 26 C 1.53008 * 109.46851 * 84.99920 * 13 12 10 27 27 H 1.08994 * 109.46555 * 185.00289 * 26 13 12 28 28 C 1.53004 * 109.47069 * 305.00216 * 26 13 12 29 29 O 1.42901 * 109.46985 * 65.00276 * 26 13 12 30 30 C 1.39733 * 119.82382 * 0.26122 * 9 8 7 31 31 C 1.37708 * 119.90814 * 359.97438 * 30 9 8 32 32 H 1.09006 * 109.46984 * 300.00172 * 1 2 3 33 33 H 1.09000 * 109.47113 * 59.99969 * 1 2 3 34 34 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46758 * 240.00217 * 2 1 3 36 36 H 1.09000 * 109.47113 * 120.00031 * 2 1 3 37 37 H 1.09006 * 109.47341 * 60.00046 * 3 2 1 38 38 H 1.09005 * 109.47365 * 300.00401 * 3 2 1 39 39 H 1.08997 * 109.46982 * 59.99455 * 4 3 2 40 40 H 1.09000 * 109.46513 * 300.00413 * 4 3 2 41 41 H 1.08004 * 119.95764 * 0.02562 * 7 6 5 42 42 H 1.08002 * 120.04909 * 179.79641 * 8 7 6 43 43 H 0.97003 * 120.00676 * 359.97438 * 12 10 9 44 44 H 0.96994 * 120.00240 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47136 * 60.00075 * 28 26 13 46 46 H 1.08994 * 109.46783 * 180.02562 * 28 26 13 47 47 H 1.09003 * 109.46561 * 300.00073 * 28 26 13 48 48 H 0.96703 * 113.99572 * 299.99686 * 29 26 13 49 49 H 1.08003 * 120.04711 * 180.02562 * 30 9 8 50 50 H 1.07999 * 119.95155 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.3917 2.9676 0.0000 7 6 6.2368 1.8640 -0.0053 8 6 7.6025 2.0401 -0.0004 9 6 8.1386 3.3306 -0.0004 10 6 9.6019 3.5239 -0.0013 11 8 10.3425 2.5597 -0.0025 12 7 10.1170 4.7694 -0.0008 13 6 11.5694 4.9613 -0.0022 14 1 12.0405 4.1739 0.5860 15 6 11.8994 6.3032 0.5989 16 8 11.0096 7.0273 0.9903 17 8 13.1795 6.6964 0.7020 18 6 13.4058 7.9084 1.2501 19 1 12.5757 8.5144 1.5820 20 6 14.7048 8.3766 1.3862 21 7 15.7150 7.6393 0.9817 22 14 15.0180 10.0549 2.1443 23 1 14.4803 10.0811 3.5283 24 1 16.4790 10.3187 2.1763 25 1 14.3436 11.0989 1.3315 26 6 12.0898 4.9048 -1.4400 27 1 13.1784 4.9585 -1.4346 28 6 11.6471 3.5930 -2.0914 29 8 11.5621 6.0067 -2.1812 30 6 7.2857 4.4374 0.0002 31 6 5.9211 4.2528 0.0002 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6767 1.9564 -0.8900 39 1 3.9330 0.9288 -0.8908 40 1 3.9337 0.9285 0.8891 41 1 5.8217 0.8669 -0.0099 42 1 8.2584 1.1821 -0.0013 43 1 9.5261 5.5387 -0.0002 44 1 16.6231 7.9665 1.0772 45 1 10.5585 3.5393 -2.0967 46 1 12.0182 3.5526 -3.1154 47 1 12.0497 2.7526 -1.5259 48 1 10.5963 6.0228 -2.2278 49 1 7.6962 5.4364 -0.0003 50 1 5.2612 5.1077 0.0002 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:29 Heat of formation + Delta-G solvation = -210.141124 kcal Electronic energy + Delta-G solvation = -32490.513456 eV Core-core repulsion = 27868.434757 eV Total energy + Delta-G solvation = -4622.078699 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.01446 -41.24160 -40.50710 -38.80564 -38.06731 -37.33706 -35.98822 -35.39127 -34.33128 -32.60802 -32.19658 -31.17636 -30.03705 -29.20418 -27.16467 -25.41189 -24.46692 -23.33332 -23.23582 -22.07597 -21.93108 -21.40801 -19.93683 -19.65670 -19.06662 -18.44801 -17.88798 -17.57978 -17.37330 -16.97627 -16.67691 -16.39171 -16.22232 -16.17870 -15.86457 -15.68567 -15.55343 -15.02367 -14.80721 -14.57118 -14.54325 -14.31412 -13.96028 -13.86926 -13.64630 -13.56549 -13.28371 -13.16207 -13.13944 -12.92992 -12.80414 -12.43834 -12.25179 -12.18101 -12.17644 -12.03740 -12.01360 -11.86941 -11.74972 -11.56083 -11.44886 -11.13959 -11.09836 -10.70776 -10.25890 -10.15216 -9.32986 -8.54735 -6.34777 -0.19486 0.27711 1.24510 1.32765 1.48709 1.56904 1.64495 1.77687 2.07622 2.17029 2.63097 2.77547 2.96555 3.36637 3.54200 3.63261 3.68458 3.76987 3.92111 3.95368 4.04933 4.10179 4.12459 4.16339 4.28176 4.30255 4.34725 4.41645 4.50926 4.55865 4.62976 4.81957 4.86053 4.91010 4.91266 4.94721 4.99474 5.09316 5.11681 5.16053 5.20034 5.23401 5.25854 5.29230 5.32304 5.43761 5.57410 5.79680 6.31320 6.34143 6.54170 6.63690 6.89154 7.02279 7.67831 8.65222 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.001684 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.061509 B =16623.675107 C =17413.604031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.048 3.952 5 O -0.321 6.321 6 C 0.157 3.843 7 C -0.215 4.215 8 C -0.020 4.020 9 C -0.190 4.190 10 C 0.568 3.432 11 O -0.559 6.559 12 N -0.703 5.703 13 C 0.143 3.857 14 H 0.119 0.881 15 C 0.404 3.596 16 O -0.569 6.569 17 O -0.233 6.233 18 C -0.420 4.420 19 H 0.085 0.915 20 C -0.002 4.002 21 N -0.899 5.899 22 Si 1.018 2.982 23 H -0.261 1.261 24 H -0.261 1.261 25 H -0.261 1.261 26 C 0.107 3.893 27 H 0.102 0.898 28 C -0.158 4.158 29 O -0.565 6.565 30 C -0.041 4.041 31 C -0.164 4.164 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.414 0.586 44 H 0.279 0.721 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.380 0.620 49 H 0.144 0.856 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.773 -15.158 -4.471 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.026 4.026 5 O -0.235 6.235 6 C 0.110 3.890 7 C -0.233 4.233 8 C -0.039 4.039 9 C -0.193 4.193 10 C 0.359 3.641 11 O -0.439 6.439 12 N -0.358 5.358 13 C 0.036 3.964 14 H 0.136 0.864 15 C 0.251 3.749 16 O -0.467 6.467 17 O -0.139 6.139 18 C -0.496 4.496 19 H 0.103 0.897 20 C -0.203 4.203 21 N -0.536 5.536 22 Si 0.836 3.164 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.186 1.186 26 C 0.047 3.953 27 H 0.120 0.880 28 C -0.215 4.215 29 O -0.371 6.371 30 C -0.060 4.060 31 C -0.183 4.183 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.177 0.823 42 H 0.159 0.841 43 H 0.253 0.747 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.229 0.771 49 H 0.162 0.838 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.747 -15.369 -4.451 30.314 hybrid contribution -0.263 0.828 0.603 1.058 sum -26.010 -14.540 -3.848 30.046 Atomic orbital electron populations 1.21767 0.95050 1.02253 1.02057 1.21429 0.96543 0.94704 1.03017 1.21582 0.91611 0.98648 1.03563 1.23189 0.96178 0.80458 1.02819 1.86026 1.18443 1.31536 1.87464 1.19406 0.82819 0.94327 0.92464 1.21410 0.93104 0.99451 1.09337 1.21134 0.94993 0.96083 0.91656 1.19654 0.90912 0.95581 1.13160 1.18416 0.88811 0.81879 0.75005 1.90757 1.61541 1.40453 1.51164 1.45610 1.05480 1.09321 1.75386 1.20859 0.83672 0.92522 0.99348 0.86353 1.23611 0.82278 0.89492 0.79559 1.90496 1.48485 1.56731 1.50997 1.83852 1.26431 1.35708 1.67941 1.21415 0.94327 0.92269 1.41586 0.89682 1.26543 0.93198 1.04021 0.96504 1.70070 0.99873 1.39335 1.44274 0.84687 0.78346 0.74622 0.78722 1.18529 1.18451 1.18567 1.22238 0.99072 0.87565 0.86462 0.88005 1.22393 1.01916 0.95783 1.01394 1.86661 1.26615 1.48848 1.75021 1.21296 0.92652 0.98533 0.93533 1.20555 0.94836 0.95834 1.07064 0.92665 0.92587 0.91938 0.91030 0.91150 0.91150 0.91011 0.90506 0.90729 0.82340 0.84139 0.74738 0.91138 0.92144 0.90763 0.90677 0.77125 0.83838 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 71.98 0.71 -0.19 16 2 C -0.12 -0.69 5.93 30.60 0.18 -0.51 16 3 C -0.12 -0.96 5.58 30.59 0.17 -0.78 16 4 C 0.05 0.47 4.73 71.98 0.34 0.81 16 5 O -0.32 -5.17 10.12 -90.23 -0.91 -6.08 16 6 C 0.16 2.76 6.70 22.63 0.15 2.91 16 7 C -0.21 -3.50 9.01 22.33 0.20 -3.30 16 8 C -0.02 -0.40 9.58 22.51 0.22 -0.19 16 9 C -0.19 -4.48 5.87 -20.08 -0.12 -4.60 16 10 C 0.57 16.63 5.95 86.71 0.52 17.14 16 11 O -0.56 -18.80 13.47 -3.96 -0.05 -18.85 16 12 N -0.70 -21.78 4.30 -449.20 -1.93 -23.71 16 13 C 0.14 5.47 2.67 44.24 0.12 5.59 16 14 H 0.12 4.61 7.58 -2.39 -0.02 4.60 16 15 C 0.40 20.06 6.79 71.23 0.48 20.54 16 16 O -0.57 -29.50 15.07 20.77 0.31 -29.19 16 17 O -0.23 -13.70 9.67 14.83 0.14 -13.56 16 18 C -0.42 -25.48 9.65 67.94 0.66 -24.83 16 19 H 0.09 5.17 6.86 -2.91 -0.02 5.15 16 20 C 0.00 -0.10 5.49 84.87 0.47 0.36 16 21 N -0.90 -53.32 13.67 21.62 0.30 -53.03 16 22 Si 1.02 43.49 29.55 68.60 2.03 45.52 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 C 0.11 3.78 3.44 30.60 0.11 3.89 16 27 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 28 C -0.16 -4.52 8.02 71.98 0.58 -3.95 16 29 O -0.57 -20.41 12.82 -148.98 -1.91 -22.32 16 30 C -0.04 -0.84 9.53 22.51 0.21 -0.62 16 31 C -0.16 -2.99 9.97 22.33 0.22 -2.77 16 32 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.08 0.59 7.64 -2.39 -0.02 0.57 16 40 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 41 H 0.16 1.69 6.28 -2.91 -0.02 1.67 16 42 H 0.14 2.82 7.64 -2.91 -0.02 2.80 16 43 H 0.41 11.99 5.81 -92.71 -0.54 11.45 16 44 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.06 1.65 5.92 -2.39 -0.01 1.63 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.25 7.18 -2.39 -0.02 2.23 16 48 H 0.38 10.76 8.66 -74.06 -0.64 10.12 16 49 H 0.14 2.62 6.40 -2.91 -0.02 2.60 16 50 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.64 416.11 3.00 -72.64 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.19 Total: 39.06 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.22 Total: 9.52 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.63 Total: -76.74 kcal Atomic # 8 Polarization: -87.58 SS G_CDS: -2.42 Total: -90.00 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.64 3.00 -72.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.499 kcal (2) G-P(sol) polarization free energy of solvation -75.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds