Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46811 * 34.99484 * 13 12 10 15 15 C 1.50695 * 109.47248 * 155.00091 * 13 12 10 16 16 O 1.21210 * 120.00114 * 359.97438 * 15 13 12 17 17 O 1.34313 * 119.99914 * 180.02562 * 15 13 12 18 18 C 1.34921 * 116.99743 * 179.97438 * 17 15 13 19 19 H 1.07997 * 119.99951 * 359.97438 * 18 17 15 20 20 C 1.38757 * 119.99757 * 180.02562 * 18 17 15 21 21 N 1.31437 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99849 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.46833 * 119.99914 * 22 20 18 25 25 H 1.48500 * 109.47421 * 239.99679 * 22 20 18 26 26 C 1.52997 * 109.46852 * 274.99883 * 13 12 10 27 27 H 1.09005 * 109.47379 * 300.00112 * 26 13 12 28 28 C 1.53004 * 109.47449 * 59.99795 * 26 13 12 29 29 O 1.42903 * 109.47226 * 179.97438 * 26 13 12 30 30 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 31 31 C 1.37709 * 119.90833 * 359.97438 * 30 9 8 32 32 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 33 33 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 34 34 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 36 36 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 37 37 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 38 38 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 39 39 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 40 40 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 41 41 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 42 42 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 43 43 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 44 44 H 0.97008 * 119.99432 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.46571 * 59.99823 * 28 26 13 46 46 H 1.08995 * 109.47577 * 179.97438 * 28 26 13 47 47 H 1.08996 * 109.46894 * 300.00080 * 28 26 13 48 48 H 0.96703 * 113.99726 * 299.99896 * 29 26 13 49 49 H 1.08003 * 120.04691 * 180.02562 * 30 9 8 50 50 H 1.07999 * 119.95155 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 1 12.0395 4.1748 -0.5882 15 6 11.8982 6.3042 -0.5989 16 8 11.0078 7.0286 -0.9882 17 8 13.1782 6.6976 -0.7035 18 6 13.4035 7.9101 -1.2506 19 1 12.5730 8.5160 -1.5815 20 6 14.7024 8.3781 -1.3892 21 7 15.7131 7.6404 -0.9870 22 14 15.0145 10.0565 -2.1474 23 1 13.7189 10.6820 -2.5155 24 1 15.7203 10.9194 -1.1662 25 1 15.8524 9.9023 -3.3637 26 6 12.0917 4.9038 1.4383 27 1 11.6214 5.6906 2.0281 28 6 11.7577 3.5408 2.0480 29 8 13.5085 5.0905 1.4378 30 6 7.2855 4.4377 0.0010 31 6 5.9208 4.2529 0.0001 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 1.6765 1.9563 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.9337 0.9285 -0.8891 40 1 3.9328 0.9289 0.8909 41 1 5.8216 0.8671 -0.0079 42 1 8.2583 1.1824 0.0033 43 1 9.5258 5.5390 0.0016 44 1 16.6212 7.9675 -1.0842 45 1 12.2280 2.7539 1.4582 46 1 12.1303 3.4993 3.0714 47 1 10.6771 3.3980 2.0483 48 1 13.9928 4.4244 0.9310 49 1 7.6959 5.4367 0.0002 50 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -185.633855 kcal Electronic energy + Delta-G solvation = -32389.682266 eV Core-core repulsion = 27768.666282 eV Total energy + Delta-G solvation = -4621.015984 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.77978 -40.05182 -38.90167 -37.61744 -36.75808 -35.56762 -35.43143 -34.03194 -32.15318 -31.45401 -31.28162 -30.06594 -29.32611 -27.65078 -25.14630 -24.80266 -23.42304 -22.60800 -21.75467 -21.50905 -20.58058 -20.15495 -18.66513 -17.98777 -17.72514 -16.86604 -16.71639 -16.57232 -16.11694 -15.54119 -15.28271 -15.21388 -15.12111 -14.62066 -14.54237 -14.33720 -14.31442 -14.17835 -13.78254 -13.76439 -13.45558 -13.26429 -12.80039 -12.68553 -12.64205 -12.32522 -12.21631 -11.89956 -11.70329 -11.67938 -11.60961 -11.47806 -11.37325 -11.23264 -11.07613 -11.02407 -10.86556 -10.44007 -10.41378 -10.01671 -9.89159 -9.70801 -9.35279 -9.21637 -8.77003 -8.57514 -8.47729 -6.40682 -4.07998 0.71471 1.07800 2.70108 2.78136 3.02710 3.07493 3.21098 3.28014 3.41937 3.70253 3.95492 4.27496 4.30228 4.43981 4.46776 4.52260 4.54587 4.68322 4.69743 4.78240 4.92252 4.96017 5.00290 5.09190 5.11085 5.20039 5.21721 5.24545 5.29692 5.33971 5.37800 5.48760 5.55752 5.64309 5.71551 5.74151 5.79038 5.91618 6.00327 6.04878 6.12595 6.22511 6.34313 6.37952 6.50723 6.73664 7.01449 7.37957 7.60341 7.92376 8.18385 8.27343 8.63057 9.06871 9.81236 10.75918 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.001674 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.088406 B =16726.219428 C =17767.145703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.056 3.944 5 O -0.312 6.312 6 C 0.154 3.846 7 C -0.221 4.221 8 C -0.017 4.017 9 C -0.170 4.170 10 C 0.564 3.436 11 O -0.538 6.538 12 N -0.700 5.700 13 C 0.132 3.868 14 H 0.113 0.887 15 C 0.390 3.610 16 O -0.561 6.561 17 O -0.185 6.185 18 C -0.384 4.384 19 H 0.095 0.905 20 C 0.046 3.954 21 N -0.852 5.852 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.103 3.897 27 H 0.096 0.904 28 C -0.173 4.173 29 O -0.531 6.531 30 C -0.042 4.042 31 C -0.159 4.159 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.409 0.591 44 H 0.269 0.731 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.377 0.623 49 H 0.138 0.862 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.235 -14.936 4.141 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.019 4.019 5 O -0.225 6.225 6 C 0.108 3.892 7 C -0.239 4.239 8 C -0.035 4.035 9 C -0.173 4.173 10 C 0.353 3.647 11 O -0.417 6.417 12 N -0.355 5.355 13 C 0.025 3.975 14 H 0.131 0.869 15 C 0.236 3.764 16 O -0.460 6.460 17 O -0.090 6.090 18 C -0.460 4.460 19 H 0.113 0.887 20 C -0.159 4.159 21 N -0.488 5.488 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.202 1.202 26 C 0.042 3.958 27 H 0.114 0.886 28 C -0.231 4.231 29 O -0.335 6.335 30 C -0.061 4.061 31 C -0.178 4.178 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.247 0.753 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.224 0.776 49 H 0.156 0.844 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.935 -14.746 4.424 28.458 hybrid contribution 0.024 0.516 -0.807 0.958 sum -23.911 -14.229 3.617 28.059 Atomic orbital electron populations 1.21749 0.95095 1.01957 1.02157 1.21438 0.96530 0.95493 1.02508 1.21593 0.92327 0.97916 1.03927 1.22925 0.95565 0.81658 1.01759 1.86020 1.19035 1.29607 1.87883 1.19252 0.82241 0.94202 0.93514 1.21200 0.93978 0.98252 1.10502 1.21041 0.94152 0.96619 0.91737 1.19811 0.92729 0.94358 1.10444 1.18025 0.87738 0.82820 0.76155 1.90774 1.60701 1.39985 1.50232 1.45572 1.06887 1.08535 1.74555 1.21050 0.81625 0.95925 0.98899 0.86888 1.22717 0.83674 0.88328 0.81681 1.90535 1.48482 1.55802 1.51145 1.83905 1.23887 1.35130 1.66029 1.21289 0.93683 0.91611 1.39442 0.88699 1.25326 0.94196 0.99654 0.96773 1.70018 0.99013 1.36848 1.42921 0.85641 0.78894 0.80305 0.78548 1.18993 1.20129 1.20186 1.22065 0.83344 0.97811 0.92562 0.88584 1.22551 1.02306 0.97215 1.01006 1.86760 1.15495 1.56193 1.75017 1.21248 0.92371 0.98712 0.93754 1.20362 0.95009 0.94988 1.07408 0.92501 0.92500 0.92416 0.91596 0.91607 0.90700 0.90682 0.91721 0.91724 0.84913 0.84225 0.75269 0.92115 0.91307 0.92408 0.92075 0.77571 0.84435 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.12 -0.48 5.93 -26.73 -0.16 -0.64 16 3 C -0.12 -0.61 5.58 -26.73 -0.15 -0.76 16 4 C 0.06 0.35 4.73 37.16 0.18 0.53 16 5 O -0.31 -2.90 10.12 -18.81 -0.19 -3.09 16 6 C 0.15 1.56 6.70 -39.02 -0.26 1.30 16 7 C -0.22 -2.10 9.01 -39.49 -0.36 -2.45 16 8 C -0.02 -0.19 9.58 -39.22 -0.38 -0.56 16 9 C -0.17 -2.16 5.87 -104.96 -0.62 -2.77 16 10 C 0.56 8.60 6.12 -12.44 -0.08 8.52 16 11 O -0.54 -9.23 13.46 5.29 0.07 -9.16 16 12 N -0.70 -11.26 4.79 -55.96 -0.27 -11.53 16 13 C 0.13 2.48 2.55 -69.08 -0.18 2.30 16 14 H 0.11 2.13 7.58 -51.93 -0.39 1.74 16 15 C 0.39 9.42 7.26 36.00 0.26 9.68 16 16 O -0.56 -14.35 15.07 -19.05 -0.29 -14.64 16 17 O -0.19 -5.17 8.54 -26.70 -0.23 -5.40 16 18 C -0.38 -11.24 9.65 30.92 0.30 -10.94 16 19 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 20 C 0.05 1.28 5.49 -17.53 -0.10 1.19 16 21 N -0.85 -24.65 13.67 55.48 0.76 -23.89 16 22 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.10 1.81 3.34 -26.73 -0.09 1.72 16 27 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 28 C -0.17 -2.58 8.06 37.16 0.30 -2.28 16 29 O -0.53 -10.48 12.03 -52.37 -0.63 -11.11 16 30 C -0.04 -0.47 9.53 -39.22 -0.37 -0.84 16 31 C -0.16 -1.63 9.97 -39.50 -0.39 -2.02 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.36 7.64 -51.93 -0.40 -0.04 16 40 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 41 H 0.13 0.94 6.28 -52.48 -0.33 0.61 16 42 H 0.14 1.51 7.64 -52.49 -0.40 1.11 16 43 H 0.41 6.24 5.81 -40.82 -0.24 6.01 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.90 5.77 -51.93 -0.30 0.60 16 48 H 0.38 6.38 9.04 45.56 0.41 6.79 16 49 H 0.14 1.39 6.39 -52.48 -0.34 1.06 16 50 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -34.57 415.70 -7.74 -42.32 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.49 Total: 12.32 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.72 Total: 1.75 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.49 Total: -35.42 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.26 Total: -43.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.57 -7.74 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.315 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds