Wall clock time and date at job start Tue Mar 31 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46811 * 34.99484 * 13 12 10 15 15 C 1.50695 * 109.47248 * 155.00091 * 13 12 10 16 16 O 1.21210 * 120.00114 * 359.97438 * 15 13 12 17 17 O 1.34313 * 119.99914 * 180.02562 * 15 13 12 18 18 C 1.34921 * 116.99743 * 179.97438 * 17 15 13 19 19 H 1.07997 * 119.99951 * 359.97438 * 18 17 15 20 20 C 1.38757 * 119.99757 * 180.02562 * 18 17 15 21 21 N 1.31437 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99849 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.46833 * 119.99914 * 22 20 18 25 25 H 1.48500 * 109.47421 * 239.99679 * 22 20 18 26 26 C 1.52997 * 109.46852 * 274.99883 * 13 12 10 27 27 H 1.09005 * 109.47379 * 300.00112 * 26 13 12 28 28 C 1.53004 * 109.47449 * 59.99795 * 26 13 12 29 29 O 1.42903 * 109.47226 * 179.97438 * 26 13 12 30 30 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 31 31 C 1.37709 * 119.90833 * 359.97438 * 30 9 8 32 32 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 33 33 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 34 34 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 36 36 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 37 37 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 38 38 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 39 39 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 40 40 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 41 41 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 42 42 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 43 43 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 44 44 H 0.97008 * 119.99432 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.46571 * 59.99823 * 28 26 13 46 46 H 1.08995 * 109.47577 * 179.97438 * 28 26 13 47 47 H 1.08996 * 109.46894 * 300.00080 * 28 26 13 48 48 H 0.96703 * 113.99726 * 299.99896 * 29 26 13 49 49 H 1.08003 * 120.04691 * 180.02562 * 30 9 8 50 50 H 1.07999 * 119.95155 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 1 12.0395 4.1748 -0.5882 15 6 11.8982 6.3042 -0.5989 16 8 11.0078 7.0286 -0.9882 17 8 13.1782 6.6976 -0.7035 18 6 13.4035 7.9101 -1.2506 19 1 12.5730 8.5160 -1.5815 20 6 14.7024 8.3781 -1.3892 21 7 15.7131 7.6404 -0.9870 22 14 15.0145 10.0565 -2.1474 23 1 13.7189 10.6820 -2.5155 24 1 15.7203 10.9194 -1.1662 25 1 15.8524 9.9023 -3.3637 26 6 12.0917 4.9038 1.4383 27 1 11.6214 5.6906 2.0281 28 6 11.7577 3.5408 2.0480 29 8 13.5085 5.0905 1.4378 30 6 7.2855 4.4377 0.0010 31 6 5.9208 4.2529 0.0001 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 1.6765 1.9563 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.9337 0.9285 -0.8891 40 1 3.9328 0.9289 0.8909 41 1 5.8216 0.8671 -0.0079 42 1 8.2583 1.1824 0.0033 43 1 9.5258 5.5390 0.0016 44 1 16.6212 7.9675 -1.0842 45 1 12.2280 2.7539 1.4582 46 1 12.1303 3.4993 3.0714 47 1 10.6771 3.3980 2.0483 48 1 13.9928 4.4244 0.9310 49 1 7.6959 5.4367 0.0002 50 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:34 Heat of formation + Delta-G solvation = -208.430536 kcal Electronic energy + Delta-G solvation = -32390.670804 eV Core-core repulsion = 27768.666282 eV Total energy + Delta-G solvation = -4622.004522 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.93752 -41.22276 -40.46927 -38.70374 -38.04248 -37.38003 -35.98859 -35.52719 -34.28345 -32.44505 -32.18443 -31.04782 -30.02785 -29.16347 -27.12194 -25.40524 -24.40072 -23.31882 -23.25342 -22.04066 -21.92865 -21.53243 -19.88988 -19.63908 -19.06316 -18.29553 -17.87365 -17.52384 -17.37320 -16.88632 -16.64655 -16.29991 -16.18971 -16.14308 -15.99332 -15.68148 -15.50758 -15.00523 -14.80501 -14.56815 -14.40211 -14.30388 -13.89760 -13.85529 -13.62674 -13.55072 -13.31501 -13.16495 -13.10865 -12.90617 -12.77291 -12.42542 -12.22565 -12.18118 -12.17558 -12.01349 -11.96987 -11.86681 -11.75082 -11.48869 -11.44693 -11.13899 -10.99628 -10.67170 -10.22024 -10.15375 -9.33065 -8.51267 -6.30470 -0.19587 0.27375 1.23320 1.34072 1.51381 1.56268 1.66684 1.77189 2.07366 2.18144 2.64975 2.77922 2.99579 3.45785 3.56578 3.68027 3.75709 3.77595 3.86984 3.92144 3.96654 4.10092 4.10723 4.16457 4.29489 4.34778 4.38055 4.42128 4.50868 4.59450 4.63041 4.82289 4.86052 4.91232 4.94317 4.95473 4.99371 5.07314 5.09319 5.16926 5.19585 5.25723 5.27910 5.29586 5.32334 5.43789 5.57182 5.82330 6.31337 6.35321 6.57599 6.79620 6.92197 7.02698 7.73225 8.67870 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.001674 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.088406 B =16726.219428 C =17767.145703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.117 4.117 4 C 0.048 3.952 5 O -0.321 6.321 6 C 0.157 3.843 7 C -0.214 4.214 8 C -0.019 4.019 9 C -0.191 4.191 10 C 0.568 3.432 11 O -0.559 6.559 12 N -0.700 5.700 13 C 0.146 3.854 14 H 0.113 0.887 15 C 0.390 3.610 16 O -0.577 6.577 17 O -0.211 6.211 18 C -0.423 4.423 19 H 0.082 0.918 20 C 0.001 3.999 21 N -0.888 5.888 22 Si 1.015 2.985 23 H -0.265 1.265 24 H -0.262 1.262 25 H -0.261 1.261 26 C 0.108 3.892 27 H 0.093 0.907 28 C -0.156 4.156 29 O -0.555 6.555 30 C -0.043 4.043 31 C -0.165 4.165 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.413 0.587 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.386 0.614 49 H 0.142 0.858 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.754 -15.612 4.278 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.027 4.027 5 O -0.235 6.235 6 C 0.110 3.890 7 C -0.233 4.233 8 C -0.038 4.038 9 C -0.194 4.194 10 C 0.358 3.642 11 O -0.439 6.439 12 N -0.356 5.356 13 C 0.038 3.962 14 H 0.131 0.869 15 C 0.237 3.763 16 O -0.476 6.476 17 O -0.116 6.116 18 C -0.499 4.499 19 H 0.099 0.901 20 C -0.200 4.200 21 N -0.525 5.525 22 Si 0.834 3.166 23 H -0.189 1.189 24 H -0.186 1.186 25 H -0.185 1.185 26 C 0.047 3.953 27 H 0.111 0.889 28 C -0.214 4.214 29 O -0.360 6.360 30 C -0.062 4.062 31 C -0.183 4.183 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.252 0.748 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.235 0.765 49 H 0.160 0.840 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.488 -15.452 4.566 30.154 hybrid contribution 0.300 0.619 -0.838 1.084 sum -25.188 -14.833 3.728 29.468 Atomic orbital electron populations 1.21764 0.95052 1.02258 1.02052 1.21428 0.96541 0.94688 1.03029 1.21582 0.91608 0.98664 1.03556 1.23197 0.96181 0.80444 1.02843 1.86026 1.18411 1.31564 1.87468 1.19395 0.82839 0.94293 0.92474 1.21417 0.93085 0.99459 1.09300 1.21137 0.95013 0.96020 0.91627 1.19673 0.90984 0.95612 1.13114 1.18415 0.88834 0.81878 0.75066 1.90756 1.61512 1.40386 1.51282 1.45555 1.05496 1.09332 1.75173 1.20935 0.83518 0.92330 0.99374 0.86900 1.23768 0.82549 0.89757 0.80197 1.90504 1.48664 1.56978 1.51478 1.83928 1.25718 1.34999 1.66974 1.21478 0.94217 0.92601 1.41590 0.90054 1.26470 0.93273 1.03785 0.96512 1.70099 0.99707 1.38950 1.43698 0.84613 0.78914 0.74857 0.78242 1.18858 1.18615 1.18524 1.22106 0.82309 0.99364 0.91535 0.88928 1.22381 1.02435 0.95080 1.01478 1.86719 1.16753 1.57200 1.75330 1.21297 0.92727 0.98535 0.93594 1.20547 0.94775 0.95886 1.07115 0.92589 0.92673 0.91927 0.91129 0.91025 0.91030 0.91151 0.90683 0.90498 0.82238 0.84025 0.74812 0.91287 0.91475 0.90871 0.91762 0.76510 0.84034 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.12 -0.70 5.93 30.59 0.18 -0.52 16 3 C -0.12 -0.98 5.58 30.59 0.17 -0.81 16 4 C 0.05 0.48 4.73 71.98 0.34 0.82 16 5 O -0.32 -5.28 10.12 -90.23 -0.91 -6.19 16 6 C 0.16 2.84 6.70 22.63 0.15 2.99 16 7 C -0.21 -3.57 9.01 22.33 0.20 -3.37 16 8 C -0.02 -0.40 9.58 22.51 0.22 -0.18 16 9 C -0.19 -4.68 5.87 -20.08 -0.12 -4.80 16 10 C 0.57 17.11 6.12 86.71 0.53 17.64 16 11 O -0.56 -18.96 13.46 -3.99 -0.05 -19.01 16 12 N -0.70 -22.60 4.79 -449.21 -2.15 -24.75 16 13 C 0.15 5.57 2.55 44.24 0.11 5.69 16 14 H 0.11 4.35 7.58 -2.39 -0.02 4.33 16 15 C 0.39 19.41 7.26 71.23 0.52 19.93 16 16 O -0.58 -30.33 15.07 20.77 0.31 -30.01 16 17 O -0.21 -12.19 8.54 20.56 0.18 -12.02 16 18 C -0.42 -25.50 9.65 67.94 0.66 -24.85 16 19 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 20 C 0.00 0.08 5.49 84.88 0.47 0.54 16 21 N -0.89 -52.06 13.67 21.62 0.30 -51.77 16 22 Si 1.01 43.40 29.55 68.60 2.03 45.43 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 C 0.11 3.78 3.34 30.59 0.10 3.88 16 27 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 28 C -0.16 -4.52 8.06 71.98 0.58 -3.94 16 29 O -0.55 -22.28 12.03 -132.60 -1.59 -23.87 16 30 C -0.04 -0.92 9.53 22.51 0.21 -0.70 16 31 C -0.16 -3.13 9.97 22.33 0.22 -2.91 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 0.62 7.64 -2.38 -0.02 0.60 16 40 H 0.08 0.61 7.66 -2.38 -0.02 0.59 16 41 H 0.16 1.73 6.28 -2.91 -0.02 1.71 16 42 H 0.14 2.87 7.64 -2.91 -0.02 2.85 16 43 H 0.41 12.71 5.81 -92.71 -0.54 12.18 16 44 H 0.28 14.78 8.31 -92.70 -0.77 14.01 16 45 H 0.07 1.98 7.53 -2.38 -0.02 1.96 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.06 1.83 5.77 -2.39 -0.01 1.81 16 48 H 0.39 13.41 9.04 -74.06 -0.67 12.74 16 49 H 0.14 2.81 6.39 -2.91 -0.02 2.79 16 50 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -75.15 415.70 3.13 -72.02 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.22 Total: 40.94 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.26 Total: 9.23 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.86 Total: -76.52 kcal Atomic # 8 Polarization: -89.03 SS G_CDS: -2.07 Total: -91.11 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.15 3.13 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.410 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds