Wall clock time and date at job start Tue Mar 31 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 C 1.52994 * 109.47010 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.35708 * 117.00463 * 179.97438 * 5 4 3 7 7 C 1.38998 * 119.91461 * 179.97438 * 6 5 4 8 8 C 1.37698 * 120.08495 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.91869 * 0.02562 * 8 7 6 10 10 C 1.47599 * 120.09162 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99721 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72388 * 12 10 9 14 14 H 1.08999 * 109.47228 * 325.27715 * 13 12 10 15 15 C 1.50706 * 109.47303 * 205.27741 * 13 12 10 16 16 O 1.21209 * 119.99711 * 0.02562 * 15 13 12 17 17 O 1.34312 * 120.00374 * 179.97438 * 15 13 12 18 18 C 1.34917 * 117.00130 * 180.02562 * 17 15 13 19 19 H 1.07993 * 119.99695 * 359.97438 * 18 17 15 20 20 C 1.38754 * 119.99747 * 180.02562 * 18 17 15 21 21 N 1.31441 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99746 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47158 * 89.99814 * 22 20 18 24 24 H 1.48495 * 109.47273 * 209.99975 * 22 20 18 25 25 H 1.48500 * 109.47185 * 330.00267 * 22 20 18 26 26 C 1.52999 * 109.47341 * 85.27876 * 13 12 10 27 27 H 1.08999 * 109.47091 * 59.99755 * 26 13 12 28 28 C 1.53001 * 109.46944 * 300.00113 * 26 13 12 29 29 O 1.42902 * 109.47357 * 180.02562 * 26 13 12 30 30 C 1.39736 * 119.81631 * 0.27230 * 9 8 7 31 31 C 1.37701 * 119.91260 * 359.47232 * 30 9 8 32 32 H 1.09001 * 109.47331 * 300.00451 * 1 2 3 33 33 H 1.08999 * 109.47091 * 60.00311 * 1 2 3 34 34 H 1.08998 * 109.46909 * 180.02562 * 1 2 3 35 35 H 1.08990 * 109.47757 * 239.99718 * 2 1 3 36 36 H 1.08999 * 109.46795 * 119.98775 * 2 1 3 37 37 H 1.09001 * 109.47516 * 59.99662 * 3 2 1 38 38 H 1.09007 * 109.46859 * 299.99455 * 3 2 1 39 39 H 1.08990 * 109.47685 * 59.99672 * 4 3 2 40 40 H 1.09004 * 109.47140 * 299.99009 * 4 3 2 41 41 H 1.07993 * 119.95493 * 359.97438 * 7 6 5 42 42 H 1.08005 * 120.04351 * 179.97438 * 8 7 6 43 43 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 44 44 H 0.96995 * 120.00057 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46985 * 59.99581 * 28 26 13 46 46 H 1.08995 * 109.47084 * 179.97438 * 28 26 13 47 47 H 1.08999 * 109.46935 * 299.99738 * 28 26 13 48 48 H 0.96703 * 113.99722 * 300.00022 * 29 26 13 49 49 H 1.08003 * 120.04232 * 179.70417 * 30 9 8 50 50 H 1.08009 * 119.95244 * 180.24791 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3916 2.9678 -0.0013 7 6 5.9208 4.2531 -0.0024 8 6 7.2854 4.4377 -0.0031 9 6 8.1384 3.3310 -0.0031 10 6 9.6017 3.5244 -0.0032 11 8 10.0663 4.6480 -0.0037 12 7 10.4227 2.4556 -0.0027 13 6 11.8750 2.6476 -0.0089 14 1 12.1223 3.5306 -0.5982 15 6 12.5392 1.4377 -0.6141 16 8 11.8660 0.5074 -1.0022 17 8 13.8770 1.3906 -0.7243 18 6 14.4074 0.2792 -1.2755 19 1 13.7615 -0.5214 -1.6043 20 6 15.7827 0.1647 -1.4190 21 7 16.5689 1.1385 -1.0175 22 14 16.5172 -1.3743 -2.1815 23 1 16.6286 -1.1938 -3.6513 24 1 17.8659 -1.6153 -1.6088 25 1 15.6409 -2.5374 -1.8907 26 6 12.3706 2.8370 1.4261 27 1 12.1234 1.9540 2.0154 28 6 11.6964 4.0654 2.0405 29 8 13.7872 3.0249 1.4200 30 6 7.6023 2.0405 -0.0083 31 6 6.2367 1.8643 -0.0023 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8898 36 1 1.8933 -0.5136 0.8901 37 1 1.6766 1.9565 0.8899 38 1 1.6767 1.9563 -0.8901 39 1 3.9330 0.9289 -0.8907 40 1 3.9337 0.9288 0.8892 41 1 5.2610 5.1080 -0.0037 42 1 7.6959 5.4367 -0.0043 43 1 10.0520 1.5592 -0.0027 44 1 17.5303 1.0586 -1.1181 45 1 10.6158 3.9225 2.0451 46 1 12.0491 4.2001 3.0630 47 1 11.9436 4.9484 1.4512 48 1 14.2807 2.2835 1.0433 49 1 8.2583 1.1825 -0.0132 50 1 5.8216 0.8671 -0.0023 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:39 Heat of formation + Delta-G solvation = -189.135424 kcal Electronic energy + Delta-G solvation = -32504.409243 eV Core-core repulsion = 27883.241419 eV Total energy + Delta-G solvation = -4621.167824 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.77770 -40.09796 -39.07922 -37.58920 -36.60167 -35.66050 -35.54639 -34.04190 -32.31210 -31.65687 -30.96183 -30.27253 -29.32903 -27.69085 -25.30332 -24.67319 -23.57666 -22.50678 -21.56144 -21.48292 -20.60009 -20.06466 -18.68239 -18.04594 -17.96493 -17.16845 -16.84681 -16.58728 -16.29167 -15.61529 -15.27470 -15.21324 -15.09306 -14.69680 -14.53750 -14.46483 -14.25978 -13.98841 -13.84249 -13.62403 -13.34977 -13.20058 -12.86995 -12.70896 -12.57861 -12.42275 -12.16346 -11.85661 -11.69137 -11.67620 -11.65073 -11.63256 -11.35962 -11.32184 -11.08071 -11.00909 -10.93788 -10.57600 -10.51644 -10.01788 -9.90246 -9.81720 -9.33914 -9.33644 -8.78741 -8.73228 -8.47493 -6.55666 -4.26145 0.73019 1.08288 2.71480 2.79125 2.96210 2.98882 3.14204 3.19648 3.27560 3.71214 3.83666 4.28915 4.32337 4.32703 4.45677 4.52783 4.57883 4.69038 4.70747 4.80008 4.88698 4.95027 4.97274 5.02179 5.13607 5.20671 5.22721 5.23547 5.33350 5.39258 5.43503 5.57274 5.62878 5.66444 5.69452 5.75679 5.85365 5.93072 6.00071 6.11817 6.16379 6.23718 6.38231 6.42966 6.53955 6.63944 7.02002 7.23695 7.60049 7.74665 8.26849 8.36943 8.45982 8.91722 9.58162 10.60249 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.001858 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.833159 B =15063.354489 C =16780.527830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.055 3.945 5 O -0.313 6.313 6 C 0.154 3.846 7 C -0.162 4.162 8 C -0.018 4.018 9 C -0.169 4.169 10 C 0.563 3.437 11 O -0.533 6.533 12 N -0.702 5.702 13 C 0.131 3.869 14 H 0.122 0.878 15 C 0.386 3.614 16 O -0.549 6.549 17 O -0.205 6.205 18 C -0.390 4.390 19 H 0.098 0.902 20 C 0.047 3.953 21 N -0.854 5.854 22 Si 0.946 3.054 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C 0.105 3.895 27 H 0.052 0.948 28 C -0.134 4.134 29 O -0.559 6.559 30 C -0.041 4.041 31 C -0.217 4.217 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.408 0.592 44 H 0.274 0.726 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.398 0.602 49 H 0.133 0.867 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.294 0.337 4.298 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.020 4.020 5 O -0.226 6.226 6 C 0.108 3.892 7 C -0.181 4.181 8 C -0.037 4.037 9 C -0.173 4.173 10 C 0.351 3.649 11 O -0.411 6.411 12 N -0.357 5.357 13 C 0.024 3.976 14 H 0.140 0.860 15 C 0.232 3.768 16 O -0.447 6.447 17 O -0.112 6.112 18 C -0.466 4.466 19 H 0.116 0.884 20 C -0.159 4.159 21 N -0.489 5.489 22 Si 0.770 3.230 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C 0.044 3.956 27 H 0.070 0.930 28 C -0.191 4.191 29 O -0.370 6.370 30 C -0.060 4.060 31 C -0.236 4.236 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.246 0.754 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.252 0.748 49 H 0.151 0.849 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.135 1.621 4.478 26.565 hybrid contribution 0.435 -2.104 -0.811 2.296 sum -25.700 -0.483 3.667 25.964 Atomic orbital electron populations 1.21749 0.95107 1.01973 1.02110 1.21443 0.96517 0.95488 1.02581 1.21590 0.92322 0.97929 1.03862 1.22933 0.95564 0.81627 1.01843 1.86016 1.19026 1.29648 1.87901 1.19260 0.82229 0.94211 0.93525 1.20391 0.94991 0.94880 1.07848 1.21088 0.91397 0.99196 0.91989 1.19817 0.92921 0.94139 1.10387 1.18038 0.86044 0.84515 0.76255 1.90797 1.77149 1.23362 1.49769 1.45569 1.05206 1.10090 1.74877 1.21136 0.80019 0.97181 0.99273 0.86032 1.23033 0.83631 0.88342 0.81832 1.90544 1.64980 1.38694 1.50461 1.83698 1.18580 1.42162 1.66734 1.21256 0.90617 0.94355 1.40330 0.88390 1.25367 0.94864 0.99088 0.96587 1.69972 1.04929 1.31366 1.42637 0.85640 0.78370 0.79935 0.79064 1.19799 1.20177 1.19102 1.21905 0.83154 0.98643 0.91940 0.92984 1.21800 0.99185 0.97508 1.00580 1.86436 1.15660 1.49629 1.85275 1.21206 0.94789 0.96465 0.93514 1.21170 0.93971 0.98350 1.10113 0.92530 0.92515 0.92398 0.91552 0.91574 0.90725 0.90721 0.91663 0.91683 0.84502 0.83714 0.75441 0.91649 0.91798 0.92516 0.90797 0.74788 0.84931 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.53 5.93 -26.73 -0.16 -0.69 16 3 C -0.12 -0.63 5.58 -26.73 -0.15 -0.78 16 4 C 0.06 0.36 4.74 37.15 0.18 0.54 16 5 O -0.31 -2.92 10.12 -18.83 -0.19 -3.11 16 6 C 0.15 1.56 6.70 -39.02 -0.26 1.30 16 7 C -0.16 -1.65 9.97 -39.50 -0.39 -2.04 16 8 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -2.17 5.88 -104.96 -0.62 -2.79 16 10 C 0.56 8.79 6.13 -12.44 -0.08 8.72 16 11 O -0.53 -9.52 13.47 5.29 0.07 -9.45 16 12 N -0.70 -11.42 4.79 -55.95 -0.27 -11.69 16 13 C 0.13 2.53 2.58 -69.08 -0.18 2.35 16 14 H 0.12 2.49 7.57 -51.93 -0.39 2.10 16 15 C 0.39 9.00 7.21 36.01 0.26 9.26 16 16 O -0.55 -13.50 15.07 -19.05 -0.29 -13.78 16 17 O -0.21 -5.43 7.20 -26.68 -0.19 -5.62 16 18 C -0.39 -10.79 9.65 30.92 0.30 -10.50 16 19 H 0.10 2.74 6.86 -52.49 -0.36 2.38 16 20 C 0.05 1.24 5.49 -17.53 -0.10 1.15 16 21 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 22 Si 0.95 20.30 29.55 -169.99 -5.02 15.28 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C 0.10 1.93 3.40 -26.73 -0.09 1.84 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 C -0.13 -2.20 8.09 37.16 0.30 -1.90 16 29 O -0.56 -11.88 13.22 -52.36 -0.69 -12.57 16 30 C -0.04 -0.45 9.53 -39.22 -0.37 -0.83 16 31 C -0.22 -2.11 9.01 -39.50 -0.36 -2.47 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.39 7.65 -51.93 -0.40 -0.01 16 40 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 43 H 0.41 6.16 5.81 -40.82 -0.24 5.92 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.06 0.99 5.79 -51.93 -0.30 0.68 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.31 7.53 -51.93 -0.39 0.91 16 48 H 0.40 9.08 6.32 45.56 0.29 9.37 16 49 H 0.13 1.33 6.40 -52.48 -0.34 0.99 16 50 H 0.13 1.00 6.28 -52.48 -0.33 0.67 16 LS Contribution 412.93 15.07 6.22 6.22 Total: -1.00 -31.68 412.93 -7.94 -39.62 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -6.62 Total: 15.57 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.72 Total: 2.35 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.49 Total: -34.51 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.29 Total: -44.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.68 -7.94 -39.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.516 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds