Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 C 1.52994 * 109.47010 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.35708 * 117.00463 * 179.97438 * 5 4 3 7 7 C 1.38998 * 119.91461 * 179.97438 * 6 5 4 8 8 C 1.37698 * 120.08495 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.91869 * 0.02562 * 8 7 6 10 10 C 1.47599 * 120.09162 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99721 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72388 * 12 10 9 14 14 H 1.08999 * 109.47228 * 325.27715 * 13 12 10 15 15 C 1.50706 * 109.47303 * 205.27741 * 13 12 10 16 16 O 1.21209 * 119.99711 * 0.02562 * 15 13 12 17 17 O 1.34312 * 120.00374 * 179.97438 * 15 13 12 18 18 C 1.34917 * 117.00130 * 180.02562 * 17 15 13 19 19 H 1.07993 * 119.99695 * 359.97438 * 18 17 15 20 20 C 1.38754 * 119.99747 * 180.02562 * 18 17 15 21 21 N 1.31441 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99746 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47158 * 89.99814 * 22 20 18 24 24 H 1.48495 * 109.47273 * 209.99975 * 22 20 18 25 25 H 1.48500 * 109.47185 * 330.00267 * 22 20 18 26 26 C 1.52999 * 109.47341 * 85.27876 * 13 12 10 27 27 H 1.08999 * 109.47091 * 59.99755 * 26 13 12 28 28 C 1.53001 * 109.46944 * 300.00113 * 26 13 12 29 29 O 1.42902 * 109.47357 * 180.02562 * 26 13 12 30 30 C 1.39736 * 119.81631 * 0.27230 * 9 8 7 31 31 C 1.37701 * 119.91260 * 359.47232 * 30 9 8 32 32 H 1.09001 * 109.47331 * 300.00451 * 1 2 3 33 33 H 1.08999 * 109.47091 * 60.00311 * 1 2 3 34 34 H 1.08998 * 109.46909 * 180.02562 * 1 2 3 35 35 H 1.08990 * 109.47757 * 239.99718 * 2 1 3 36 36 H 1.08999 * 109.46795 * 119.98775 * 2 1 3 37 37 H 1.09001 * 109.47516 * 59.99662 * 3 2 1 38 38 H 1.09007 * 109.46859 * 299.99455 * 3 2 1 39 39 H 1.08990 * 109.47685 * 59.99672 * 4 3 2 40 40 H 1.09004 * 109.47140 * 299.99009 * 4 3 2 41 41 H 1.07993 * 119.95493 * 359.97438 * 7 6 5 42 42 H 1.08005 * 120.04351 * 179.97438 * 8 7 6 43 43 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 44 44 H 0.96995 * 120.00057 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46985 * 59.99581 * 28 26 13 46 46 H 1.08995 * 109.47084 * 179.97438 * 28 26 13 47 47 H 1.08999 * 109.46935 * 299.99738 * 28 26 13 48 48 H 0.96703 * 113.99722 * 300.00022 * 29 26 13 49 49 H 1.08003 * 120.04232 * 179.70417 * 30 9 8 50 50 H 1.08009 * 119.95244 * 180.24791 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3916 2.9678 -0.0013 7 6 5.9208 4.2531 -0.0024 8 6 7.2854 4.4377 -0.0031 9 6 8.1384 3.3310 -0.0031 10 6 9.6017 3.5244 -0.0032 11 8 10.0663 4.6480 -0.0037 12 7 10.4227 2.4556 -0.0027 13 6 11.8750 2.6476 -0.0089 14 1 12.1223 3.5306 -0.5982 15 6 12.5392 1.4377 -0.6141 16 8 11.8660 0.5074 -1.0022 17 8 13.8770 1.3906 -0.7243 18 6 14.4074 0.2792 -1.2755 19 1 13.7615 -0.5214 -1.6043 20 6 15.7827 0.1647 -1.4190 21 7 16.5689 1.1385 -1.0175 22 14 16.5172 -1.3743 -2.1815 23 1 16.6286 -1.1938 -3.6513 24 1 17.8659 -1.6153 -1.6088 25 1 15.6409 -2.5374 -1.8907 26 6 12.3706 2.8370 1.4261 27 1 12.1234 1.9540 2.0154 28 6 11.6964 4.0654 2.0405 29 8 13.7872 3.0249 1.4200 30 6 7.6023 2.0405 -0.0083 31 6 6.2367 1.8643 -0.0023 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8898 36 1 1.8933 -0.5136 0.8901 37 1 1.6766 1.9565 0.8899 38 1 1.6767 1.9563 -0.8901 39 1 3.9330 0.9289 -0.8907 40 1 3.9337 0.9288 0.8892 41 1 5.2610 5.1080 -0.0037 42 1 7.6959 5.4367 -0.0043 43 1 10.0520 1.5592 -0.0027 44 1 17.5303 1.0586 -1.1181 45 1 10.6158 3.9225 2.0451 46 1 12.0491 4.2001 3.0630 47 1 11.9436 4.9484 1.4512 48 1 14.2807 2.2835 1.0433 49 1 8.2583 1.1825 -0.0132 50 1 5.8216 0.8671 -0.0023 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = -208.831157 kcal Electronic energy + Delta-G solvation = -32505.263314 eV Core-core repulsion = 27883.241419 eV Total energy + Delta-G solvation = -4622.021895 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.01585 -41.29515 -40.53086 -38.64437 -38.01220 -37.55681 -35.99126 -35.55280 -34.34812 -32.68076 -31.94662 -31.23542 -30.10489 -29.19103 -27.18148 -25.32104 -24.51613 -23.24589 -23.19725 -22.03195 -21.80069 -21.53930 -20.04195 -19.71232 -19.06972 -18.80442 -18.05099 -17.62573 -17.37387 -16.83126 -16.73573 -16.47751 -16.19832 -16.17714 -15.86736 -15.66734 -15.25850 -14.94794 -14.84266 -14.60390 -14.42405 -14.29510 -14.05802 -13.82853 -13.68350 -13.59619 -13.20863 -13.15917 -13.13273 -13.03357 -12.80693 -12.60353 -12.37626 -12.18219 -12.17243 -12.01568 -12.00434 -11.86689 -11.75542 -11.46948 -11.45015 -11.20839 -11.12382 -10.73414 -10.24655 -10.15067 -9.33225 -8.56558 -6.38107 -0.19500 0.27571 1.14861 1.32783 1.49332 1.52627 1.62410 1.74993 2.07504 2.15199 2.56576 2.77377 2.94521 3.26416 3.54188 3.64734 3.65331 3.79172 3.89289 3.92176 3.95086 4.10275 4.12685 4.17031 4.30815 4.34605 4.36228 4.41899 4.52054 4.56725 4.62641 4.83713 4.86230 4.89339 4.90529 4.91728 4.98300 5.04103 5.08029 5.13920 5.17802 5.24885 5.25657 5.30828 5.32256 5.43749 5.59164 5.74496 6.30705 6.34124 6.45304 6.62099 6.87531 7.02427 7.58703 8.61495 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.001858 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.833159 B =15063.354489 C =16780.527830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.115 4.115 4 C 0.047 3.953 5 O -0.320 6.320 6 C 0.157 3.843 7 C -0.164 4.164 8 C -0.020 4.020 9 C -0.190 4.190 10 C 0.566 3.434 11 O -0.559 6.559 12 N -0.698 5.698 13 C 0.144 3.856 14 H 0.108 0.892 15 C 0.388 3.612 16 O -0.562 6.562 17 O -0.226 6.226 18 C -0.424 4.424 19 H 0.088 0.912 20 C 0.005 3.995 21 N -0.889 5.889 22 Si 1.016 2.984 23 H -0.265 1.265 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.103 3.897 27 H 0.066 0.934 28 C -0.123 4.123 29 O -0.571 6.571 30 C -0.041 4.041 31 C -0.214 4.214 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.414 0.586 44 H 0.281 0.719 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.389 0.611 49 H 0.140 0.860 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.048 -0.893 4.514 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.153 4.153 4 C -0.027 4.027 5 O -0.233 6.233 6 C 0.110 3.890 7 C -0.182 4.182 8 C -0.039 4.039 9 C -0.193 4.193 10 C 0.356 3.644 11 O -0.439 6.439 12 N -0.354 5.354 13 C 0.037 3.963 14 H 0.126 0.874 15 C 0.235 3.765 16 O -0.459 6.459 17 O -0.133 6.133 18 C -0.499 4.499 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.525 5.525 22 Si 0.836 3.164 23 H -0.190 1.190 24 H -0.186 1.186 25 H -0.186 1.186 26 C 0.042 3.958 27 H 0.084 0.916 28 C -0.180 4.180 29 O -0.381 6.381 30 C -0.060 4.060 31 C -0.233 4.233 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.242 0.758 49 H 0.158 0.842 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.936 0.399 4.706 28.332 hybrid contribution 0.764 -1.686 -0.866 2.044 sum -27.172 -1.287 3.840 27.472 Atomic orbital electron populations 1.21763 0.94975 1.02241 1.02106 1.21436 0.96614 0.94796 1.02961 1.21575 0.91527 0.98570 1.03632 1.23191 0.96243 0.80489 1.02779 1.86023 1.18389 1.31452 1.87470 1.19408 0.82811 0.94315 0.92446 1.20562 0.94579 0.95800 1.07263 1.21127 0.91912 0.98855 0.92033 1.19648 0.90938 0.95508 1.13189 1.18489 0.87105 0.83712 0.75090 1.90783 1.77833 1.24261 1.51034 1.45518 1.03699 1.10867 1.75366 1.20944 0.81630 0.94426 0.99334 0.87394 1.23805 0.82905 0.89141 0.80650 1.90515 1.65040 1.39627 1.50755 1.83740 1.20030 1.42105 1.67401 1.21461 0.91416 0.94888 1.42113 0.89413 1.26471 0.94594 1.02390 0.96335 1.70060 1.05565 1.33400 1.43446 0.84631 0.77868 0.75618 0.78332 1.18950 1.18614 1.18566 1.22131 0.81871 1.00299 0.91510 0.91609 1.21729 0.99599 0.95694 1.00956 1.86423 1.17199 1.49322 1.85164 1.21307 0.95619 0.95896 0.93155 1.21399 0.93256 0.99513 1.09109 0.92505 0.92597 0.92012 0.91256 0.91110 0.90895 0.91059 0.90827 0.90571 0.82776 0.83799 0.74646 0.90972 0.90660 0.90846 0.92257 0.75843 0.84203 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.12 -0.80 5.93 30.60 0.18 -0.61 16 3 C -0.12 -1.00 5.58 30.59 0.17 -0.83 16 4 C 0.05 0.50 4.74 71.98 0.34 0.84 16 5 O -0.32 -5.22 10.12 -90.28 -0.91 -6.13 16 6 C 0.16 2.83 6.70 22.63 0.15 2.98 16 7 C -0.16 -3.03 9.97 22.32 0.22 -2.81 16 8 C -0.02 -0.45 9.58 22.50 0.22 -0.23 16 9 C -0.19 -4.70 5.88 -20.08 -0.12 -4.82 16 10 C 0.57 17.56 6.13 86.71 0.53 18.09 16 11 O -0.56 -20.16 13.47 -3.98 -0.05 -20.21 16 12 N -0.70 -22.65 4.79 -449.21 -2.15 -24.80 16 13 C 0.14 5.67 2.58 44.25 0.11 5.79 16 14 H 0.11 4.58 7.57 -2.39 -0.02 4.57 16 15 C 0.39 18.54 7.21 71.24 0.51 19.06 16 16 O -0.56 -27.96 15.07 20.78 0.31 -27.65 16 17 O -0.23 -12.32 7.20 20.61 0.15 -12.17 16 18 C -0.42 -24.00 9.65 67.94 0.66 -23.34 16 19 H 0.09 5.02 6.86 -2.91 -0.02 5.00 16 20 C 0.00 0.24 5.49 84.87 0.47 0.71 16 21 N -0.89 -49.77 13.67 21.62 0.30 -49.47 16 22 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 C 0.10 3.79 3.40 30.59 0.10 3.89 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 C -0.12 -3.97 8.09 71.98 0.58 -3.38 16 29 O -0.57 -24.80 13.22 -132.60 -1.75 -26.55 16 30 C -0.04 -0.84 9.53 22.51 0.21 -0.63 16 31 C -0.21 -3.64 9.01 22.32 0.20 -3.44 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 40 H 0.08 0.65 7.65 -2.38 -0.02 0.64 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.14 3.12 7.64 -2.91 -0.02 3.09 16 43 H 0.41 12.32 5.81 -92.71 -0.54 11.79 16 44 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.07 2.26 5.79 -2.39 -0.01 2.24 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 2.10 7.53 -2.39 -0.02 2.08 16 48 H 0.39 18.45 6.32 -74.06 -0.47 17.98 16 49 H 0.14 2.59 6.40 -2.91 -0.02 2.57 16 50 H 0.16 1.84 6.28 -2.91 -0.02 1.83 16 Total: -1.00 -68.64 412.93 3.16 -65.48 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -0.02 Total: 47.22 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.26 Total: 10.99 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.85 Total: -74.27 kcal Atomic # 8 Polarization: -90.46 SS G_CDS: -2.26 Total: -92.72 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -68.64 3.16 -65.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.349 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds